Search Results (509)

This work shows that inverse Judd–Ofelt (JO) analysis of relative absorption spectra, anchored by a single lifetime, provides JO parameters and radiative rates without absolute calibration. The method is applied to Er³⁺, Dy³⁺, and Sm³⁺ in a compositionally identical oxyfluoride glass. Three well-resolved ground-state 4f–4f absorption bands were selected. After baseline removal and wavenumber-domain integration, their normalized strengths S_rel,k (k = 1, 2, 3; k∈S) define a 3 × 3 system solved by non-negative least squares to obtain the anchor-independent ordering (Ω₂:Ω₄:Ω₆). Absolute scaling uses a single lifetime anchor. We report lifetime-scaled Ω_t and A_rad, and the normalized fractions p_k within the selected triplets; as imposed by the method, the anchor-independent ordering (Ω₂:Ω₄:Ω₆) is analyzed, while absolute A_rad and Ω_t scale with τ_ref. The extracted parameters fall within the expected ranges for oxyfluoride hosts and reveal clear ion-specific trends: Ω₂ follows Dy³⁺ > Er³⁺ > Sm³⁺ (site asymmetry/hypersensitive response), while the ordering Ω₄ > Ω₆ holds across all ions (oxide-rich networks). Er³⁺ exhibits the largest Ω₄ and the smallest Ω₆, indicative of pronounced medium-range “rigidity” with suppressed long-range polarizability; Sm³⁺ shows the lowest Ω₂ (more symmetric/less covalent coordination); and Dy³⁺ the highest Ω₂ (strong hypersensitive behavior). Uncertainty was quantified by Monte Carlo resampling of the preprocessing steps, yielding compact 95% confidence intervals; the resulting JO-parameter trends (Ω₂, Ω₄, Ω₆) and normalized f_k fractions reproduce the characteristic spectroscopic behavior known for each ion. This method enables quantitative JO outputs from uncalibrated spectra, allowing direct spectroscopic comparisons and quick screening when only relative absorption data are available. Full article

Orthopedic implants have a critical role in modern medical practice, being useful in bone regeneration, joint arthroplasty, and healing fractures. The success of osseointegration depends on implant properties (composition, stability, geometry, biocompatibility) and host factors (local reactivity, comorbidities). Preclinical evaluation in animal models is essential before clinical application. In orthopedic implantology, the selection and real utility of a range of animals are important, with an emphasis placed on bone–implant interface, biomechanical function, and long-term integration. Smaller animals such as rabbits and rats have widespread use in early biocompatibility and osseointegration testing, but larger animals such as pigs, sheep, and canines have a larger physiological bone similarity and can, therefore, be utilized for bearing loads in testing. Considering the utility and disadvantages of certain species—including suitability for new biomaterials, coatings, and biomechanical function—this article discusses testing methodologies such as push-out/pull-out tests, histomorphometry, and micro-CT and their utility in testing the integration of implants and regeneration of bone. Conclusions confirm a multi-species model in use in preclinical testing for the development of implants and improvements in clinical success. Unlike previous reviews, this article emphasizes translational strategies, integrates ethical perspectives in model selection, and discusses the synergistic use of imaging modalities with biomechanical tests for comprehensive assessment. Full article

Background/Objectives: Biofilm formation by Acinetobacter baumannii contributes to its persistence in clinical settings and resistance to antibiotic treatment. This study aims to identify and characterize antimicrobials from lactic acid bacteria (LAB) using molecular and in silico approaches that can prevent and disrupt A. baumannii biofilms, assess their antimicrobial host range, and define their synergy with current antibiotics. Methods: Thirteen LAB isolates from the Human Microbiome Project were screened for anti-biofilm activity against A. baumannii. Conditioned media was further tested against six ESKAPE pathogens and three skin commensals. Lentilactobacillus hilgardii was selected for detailed study and antimicrobial peptide (AMP) prediction analysis due to limited toxicity toward commensals. In silico identified peptides were synthesized and tested individually and in combination with sub-MIC doses of an antibiotic. Results: Conditioned media from five LAB species (Lentilactobacillus hilgardii, Lentilactobacillus buchneri, Ligilactobacillus ruminis, Limosilactobacillus fermentum, and Limosilactobacillus antri) significantly inhibited A. baumannii biofilm formation and reduced biomass of mature biofilms. LAB-conditioned media also exhibited broad-spectrum activity against ESKAPE pathogens, though effects on commensals varied. Bioinformatically predicted AMPs from L. hilgardii inhibited planktonic A. baumannii growth but showed no direct biofilm activity even at high doses. However, AMPs were found to synergize with sub-MIC doses of meropenem against mature biofilms leading to decolonization. Conclusions: Our study provides a comprehensive platform for the discovery and characterization of AMPs and supports using commensal bacteria to reduce, prevent, and decolonize biofilms from pathogenic bacteria in community and nosocomial settings. Full article

Background: Due to the wide host range of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), vaccination has been recommended for susceptible species in zoological collections, particularly to protect endangered species. The Zoetis^® Experimental Mink Coronavirus Vaccine (Subunit) was temporarily authorized in 2021–2024 for emergency use in North America for this purpose. However, there are limited data regarding its safety or efficacy in non-domestic mammals. The present study was conducted to assess the ability of this vaccine to elicit serum neutralizing titers against SARS-CoV-2 in selected animals from the Toronto Zoo (TZ) vaccinated during 2022. Methods: Serum samples were collected from 24 individuals across four families (Cervidae, Felidae, Ursidae, and Hyaenidae) and tested using a surrogate virus neutralization test (sVNT) and a plaque-reduction neutralization test (PRNT). Results: The results showed that all species developed some neutralizing titers after at least one vaccine dose, except for polar bears, which showed no seroconversion. Felids and hyenas had the highest neutralizing titers, which peaked at 3 and declined between 4 and 6 months after boost. These differences may stem from species-specific immune responses or lack of vaccination protocols tailored to individual species. Conclusions: While natural infection with SARS-CoV-2 could not be ruled out in the cohort of this study, insights from our results have the potential to inform future vaccine recommendations for non-domestic species. Furthermore, our study highlighted the value of competitive assays in assessing serological responses across a broad range of exotic species, for which reagents, such as anti-isotype antibodies, are often unavailable. Full article

Endophytic fungi (EF) are microorganisms that colonize the internal tissues of host plants, providing a range of benefits to them. In this symbiosis, they act as a reservoir of bioactive metabolites that are important for enhancing the host’s defense mechanisms as a resistance against pathogens. These molecules usually possess antimicrobial properties that can be exploited for application in agriculture and medicine. In this context, the current work was designed to evaluate the phytotoxic and antimicrobial properties of the endophytic fungus Curvularia inaequalis, isolated for the first time from the Iranian medicinal plant Echium khuzistanicum. Culture filtrates, their organic extracts, and isolated metabolites were tested against a series of plants to assess their phytotoxicity, as well as against a wide range of plant and human pathogens to evaluate their antimicrobial activity. The main compounds characterizing the organic extract of C. inaequalis have been identified as (R)-phomalactone, catenioblin A, and (-) asperpentyn (1–3) by using spectroscopic techniques, NMR mainly, and HR-ESI-MS. In the bioactivity evaluation carried out in this study, (R)-phomalactone (1) stood out as the most promising compound, exhibiting significant non-host phytotoxic activity on tomato leaves; potent antibacterial activity against a wide range of human pathogens, including methicillin-resistant Staphylococcus aureus (MRSA) strains; and marked antifungal activity against several economically important phytopathogens. (–)-Asperpentyn (3) also showed robust and selective antifungal activity against phytopathogens, while catenioblin A (2) exhibited only a slight phytotoxic effect and limited overall bioactivity in this study. These findings reveal that the isolated endophytic fungi hold considerable promise as an untapped source of bioactive metabolites with antibacterial, antifungal, and phytotoxic activities. Full article

Cycads are being endangered by several anthropogenic threats, and invasions of non-native herbivores are among those threats. Various country invasions by the cycad blue butterfly Luthrodes pandava have threatened the local horticulture cycad trade and native cycad populations. Little is known about behaviors of the larval stage of this specialist herbivore, the life phase that causes damage to cycad leaf tissue. The objective here was to determine larval ability to discriminate among Cycas species that are known to exhibit contrasting susceptibility to L. pandava herbivory. Dual-choice cafeteria protocols were used whereby a single larvae was provisioned with one leaflet of minimally damaged species (low quality) and one leaflet of heavily damaged species (high quality). Consumption after an 8 h feeding cycle was measured as loss in leaflet area. Wild L. pandava populations derived from in situ Philippine and Thailand Cycas habitats preferentially fed on high quality leaflets. In contrast, invasive L. pandava populations from urban locations in Guam, Philippines, and Thailand exhibited no preferences in leaflet feeding choice. The findings indicated that larvae of this Lycaenidae specialist herbivore exhibit complex selection behaviors that depend on origin of the butterfly and feeding history. Discrimination capabilities of the in situ populations that evolved with a single native Cycas species demonstrated beneficial behaviors that appear to be lost over time by invasive populations that feed on numerous novel Cycas hosts within the invasive range. Full article

Canine parvovirus (CPV) is a virus of veterinary health significance and a member of the Parvoviridae family. Despite its clinical significance and global distribution, surveillance is often limited to cases serious enough to result in veterinary visit and/or hospitalization, thereby limiting our understanding of its evolution and diversity. In this study, we coupled wastewater surveillance (WWS), long-range polymerase chain reaction (PCR) and long-read sequencing and demonstrate the utility of this approach for community-level monitoring of parvovirus diversity. We screened archived viral concentrates from wastewater (WW) collected monthly from July 2022 to June 2023 as part of a previous virus surveillance study from a population of ~500,000 people in Maricopa County, Arizona, USA. Using long-range PCR, the coding-complete sequences (~4.5 kb) were amplified as single contigs and sequenced on a long-read sequencer (MinION). Reads were trimmed, assembled, and contigs subjected to a bioinformatics workflow that includes phylogenetics, immuno-informatics and protein structure modelling. The ~4.5 kb amplicons were amplified from all the samples and sequenced. Twelve contigs (length: 4555 nt to 4675 nt: GC%: 35% to 36%) were assembled from 86,858 trimmed and size-selected reads (length 4400 nt–4900 nt) and all typed as parvoviruses. Overall, there were 11 CPV variants (2a, 2b and 2c) and 1 feline panleukopenia virus (FPV) variant. The FPV was 100% similar in the VP2 genomic region to the 1964 Johnson snow leopard strain present in the Felocell vaccine, suggesting recent shedding post-vaccination. For the CPVs, our analysis showed multiple amino acid substitutions in the VP2 and NS1 proteins, suggestive of host immune pressure and viral adaptation, respectively. The CPV variants clustered predominantly with North and South American variants, suggesting transboundary viral movement and multiple CPV-2c transmission chains seem evident. To the best of our knowledge, we here document the first detection of vaccine-origin FPV in WW. We show the presence of CPV-2a, 2b and 2c in the population sampled and provide evidence that suggests transmission of CPVs across the Americas. Our results also show that WWS coupled with long-range PCR and long-read sequencing is a feasible population-level complement to clinical case surveillance that also facilitates detection of vaccine-origin virus variants. The model we demonstrate here for tracking parvoviruses can also be easily extended to other DNA viruses of human and veterinary health significance. Full article

GitHub hosts over 10 million repositories, providing researchers with vast opportunities to study diverse software engineering problems. However, as anyone can create a repository for any purpose at no cost, open-source platforms contain many non-cooperative or non-developmental noise projects (e.g., repositories of dotfiles). When selecting open-source projects for analysis, mixing collaborative coding projects (e.g., machine learning frameworks) with noisy projects may bias research findings. To solve this problem, we optimize the Semi-Automatic Decision Tree Method (SADTM), an existing Collaborative Coding Project (CCP) classification method, to improve its generality and accuracy. We evaluate our method on the GHTorrent dataset (2012–2020) and find that it effectively enhances CCP classification in two key ways: (1) it demonstrates greater stability than existing methods, yielding consistent results across different datasets; (2) it achieves high precision, with an F-measure ranging from 0.780 to 0.893. Our method outperforms existing techniques in filtering noise and selecting CCPs, enabling researchers to extract high-quality open-source projects from candidate samples with reliable accuracy. Full article

The ornate dog tick Dermacentor reticulatus is a key vector of several pathogens and has been expanding its range across Europe, raising concerns about the associated veterinary and public health risks. This study aimed to assess the current distribution and local-scale expansion of D. reticulatus in southwestern Poland, particularly in and around the city of Wrocław. In 2024, host-seeking ticks were collected using the flagging method at 80 sites, including 30 previously monitored locations and 50 newly designated ones, selected based on land cover analysis and field verification. Spatial statistics and kriging method were applied to evaluate changes in the tick’s range compared to data from 2014–2019. The presence of D. reticulatus was confirmed at 68 sites, including 13 located beyond the previously estimated range. A shift in the mean center of tick occurrence toward the southeast was observed, along with an increase in the compact area of occurrence. The results indicate a continued expansion of D. reticulatus in the region, with urbanization and landscape structure likely influencing its spread. These findings underscore the importance of local-scale surveillance and spatial modeling in assessing the risk of tick-borne diseases. Full article

Atherigona orientalis (Diptera: Muscidae) may be a neglected agricultural pest worldwide since the public generally regards it as a saprophytic and sanitary insect. In fact, A. orientalis can infest over 50 varieties of fruits and vegetables in 26 families listed as quarantine pests in several countries. Regrettably, there are few reports of this pest despite its prevalence in the pantropical regions of many countries. In this study, we reported the distributions, morphological, and biological characteristics, including the host ranges, developmental durations, color selections, and population dynamics changes of A. orientalis in Hunan Province. Currently, A. orientalis has been found in each prefectural and municipal city of Hunan Province, China. Additionally, 15 out of 20 host plants we collected were infested. The developmental durations of the egg, larva, and pupa of A. orientalis ranged from 2 to 3, 5 to 7, and 6 to 8 days, respectively. The results of color selections showed that A. orientalis adults tend to prefer green and yellow colors. Moreover, the population dynamics of A. orientalis in Changsha City showed that July and August were the population peaks throughout the year. Our research supplements valuable data of A. orientalis for pest management and subsequent studies. Full article

Buckwheat (Fagopyrum tataricum) is native to Yunnan, China, and as a miscellaneous grain crop with high nutritional value, it has received increased attention from farmers and enterprises in recent years. In June 2024, we observed severe anthracnose in the buckwheat cultivation area in Malu Township and Jiache Township, Huize County, Qujing City, Yunnan Province, China. In this study, six isolates (SM01–SM06) of anthracnose with similar morphology were obtained using the tissue isolation method, which was due to the fact that this disease is highly pathogenic to buckwheat. The strain SM02 was selected as a representative isolate for biological characterization and molecular phylogenetic analysis, and a phylogenetic tree was constructed based on the ACT, CHS, and ITS genes to determine its taxonomic status. The selected SM02 isolate was further identified as Colletotrichum kahawae. Biological characterization showed that the representative strain SM02 exhibited optimal growth for in vitro cultivation under a photoperiod, temperature, pH, carbon source, and nitrogen source of 12L:12D, 25 °C, pH 7.0, glucose, and beef extract, respectively. Host range testing demonstrated that C. kahawae might infect important field crops, including maize, wheat, oats, and potatoes. In conclusion, C. kahawae causes buckwheat anthracnose in China, which might hinder the production of buckwheat. This study provides insight into anthracnose disease in buckwheat and provides a basis for further investigations to assess and implement effective disease management strategies. Full article

Apolygus lucorum is one of the main pests affecting tea quality. Chemical control is the primary method for managing this pest, but issues such as pesticide residues and the development of resistance are inevitable. The pest’s extensive host range holds significant practical implications for developing novel food baits. This study first investigated the preference of adult A. lucorum for tea branches under different conditions and various host plants by using the Y-tube olfactometer. Subsequently, the trapping efficacy of active tea volatile components and food baits was tested. The results revealed that adult A. lucorum exhibited a stronger preference for healthy and mechanically damaged tea branches, while they avoided branches infested with high densities of conspecifics. Adult A. lucorum showed significantly higher selection rates for Gossypium hirsutum, Vigna radiata leaf, Glycine max leaf, Phaseolus vulgaris, Lablab purpureus, and Brassica pekinensis compared with healthy tea branches. In field trials, three tea volatile baits showed effective trapping performance, (E,E)-α-farnesene, nonanal, and (Z)-3-hexenol. Three mixture baits of foods and tea plant volatiles, B. pekinensis + (Z)-3-hexenol, P. vulgaris + (E,E)-α-farnesene, and S. melongena + (Z)-3-hexenol, not only demonstrated high attractiveness but also maintained a residual effect period as long as 20 days. This study provides new insights and approaches for the integrated management of A. lucorum and offers technical support for the development of novel green pest control technologies in tea plantations. Full article

Aseptic loosening (AL) represents the leading cause of long-term failure in total joint arthroplasty, often necessitating revision surgery. This review explores the complex mechanisms underlying AL, which involve a multifaceted interaction between the implanted biomaterials and the host immune response. We outline the key inflammatory mechanisms triggered by wear debris from polyethylene, polymethylmethacrylate, metal, and ceramic materials. We also examine emerging biomarkers for early detection and differentiation between stable and loosened implants, including proinflammatory cytokines, bone metabolism markers, extracellular matrix degradation products, microRNAs, and genetic polymorphisms. Lastly, we discuss current and future strategies for prevention and treatment, ranging from surgical optimization and biomaterial selection to pharmacological interventions. A comprehensive understanding of these mechanisms may help reduce the incidence of AL and improve long-term outcomes in arthroplasty patients. Full article

Leprosy is a chronically infectious disease caused by infection with Mycobacterium leprae, or the more recently discovered Mycobacterium lepromatosis. In the Americas, wild armadillos of the Dasypus genus are natural hosts. A systematic review evaluated demographics and spatiotemporal patterns of infection with leprosy-causing bacteria in wild populations of the Dasypus novemcinctus species complex. The Web of Science Core Collection, Biosis Citation Index, Dissertations and Theses, and PubMed databases, in addition to Google Scholar, were searched on 16 April 2022. 158 records were recovered, and six peer-reviewed journal articles were selected and summarized that evaluated the effects of M. leprae-infection on mortality, reproduction, age structure, and sex ratio, in addition to seasonal, annual, and spatial infection patterns. Findings indicate that infection with M. leprae has the potential to impact reproduction, mortality, and population age structure. Studies found that the pathogen does not appear to cluster in populations, but consistent temporal findings were not recovered. A limitation of this review is that there was a single reviewer, which may introduce bias. A better understanding of the impacts and distribution of leprosy in wild populations would allow for improved management recommendations for nuisance Dasypus armadillos throughout their range and limit potential zoonotic transmission. Full article

Sclerotinia sclerotiorum is a globally distributed necrotrophic pathogen with a broad host range, including many Brassicaceae crops. In 2021, white rot symptoms on cabbage were observed in 12 commercial fields in the northern part of Serbia. Twelve representative isolates of S. sclerotiorum, forming white colonies and black sclerotia, were selected for characterization and comparison with an isolate from sunflower, as the most important host plant in Serbia. The isolates showed significant variation in growth rate and sclerotia production, while ITS sequence analysis revealed the complete nucleotide identity and all isolates grouped within the major phylogenetic clade of S. sclerotiorum. Despite the low diversity of the global population of S. sclerotiorum, forty-four haplotypes were identified, with one predominant haplotype encompassing all Serbian isolates. When six Brassicaceae species (cabbage, cauliflower, broccoli, kale, mustard, and oilseed rape) and sunflower were inoculated, sunflower was found to be the most and cauliflower the least susceptible, while isolates from cabbage were generally more aggressive than those derived from sunflower. This work represents the first detailed characterization of S. sclerotiorum infecting cabbage in Serbia and highlights its genetic uniformity and differential pathogenic potential, which are critical factors for integrated disease management and crop rotation planning in Brassicaceae agroecosystems. Full article