Search Results (484)

We investigated how water restriction affects plant–plant interactions in two Mediterranean shrubs, Thymus carnosus Boiss and Retama monosperma (L.) Boiss, to test whether intra- and interspecific interactions between these species respond differently to drought. A greenhouse experiment was conducted with 5-month-old seedlings under three interaction types (interspecific, isolation, and intraspecific). After a 7-month growth phase, a water restriction treatment was imposed, and shoot water potential and photochemical efficiency of chlorophyll were monitored weekly. Biomass allocation and stable isotope composition were analysed at the end of the experiment. Retama plants growing alone exhibited the highest relative elongation rate (9.6 cm day⁻¹ per plant), whereas for the combinations involving Thymus, the highest relative elongation rate occurred under intraspecific competition (3.63 cm day⁻¹ per plant). Results showed a negative effect of Retama on Thymus regarding drought response, while Thymus exhibited an intraspecific facilitation effect, improving growth and reducing water stress. Although Thymus produced less biomass than Retama—with Retama producing over 2 g root biomass per plant compared to 0.25 g in Thymus and >7 g aboveground biomass versus 2.7 g in Thymus—it maintained better physiological response to drought than Retama, where all combinations involving Retama showed water potential below −2.3 MPa in both species. These findings reveal contrasting strategies: Retama prioritises rapid growth but is drought-sensitive, whereas Thymus benefits from intraspecific facilitation that enhances drought tolerance. Our results highlight how drought can alter the balance between competition and facilitation in plant interactions, with implications for Mediterranean plant communities’ dynamics under climate change. Full article

Wildlife rescue centres face considerable challenges in promoting animal welfare and enhancing the care and housing conditions of animals under professional supervision. These challenges are further compounded by the diversity of species admitted, each with distinct specific needs. In Colombia and other Latin American countries, primates are among the most frequently rescued and behaviourally complex mammalian taxa, requiring particular attention. In response, this study aimed to assess the content validity of proposed animal welfare indicators for Cebus albifrons through a Delphi consultation process and to develop two species-specific assessment protocols: a daily-use tool for keepers and a comprehensive protocol for professional audits. A panel of 23 experts in primate care and rehabilitation participated in two consultation rounds to evaluate and prioritise the indicators based on their content validity, perceived reliability, and practicality. Indicators were classified as either animal-based (direct measures) or resource- and management-based (indirect measures). After each round, experts received summarised feedback to refine their responses and facilitate consensus building. Of the 39 initially proposed indicators, 28 were validated for inclusion in the extended protocol and 10 selected for the daily-use checklist. Among these, 20 indicators in the extended protocol and 6 in the daily protocol were resource- or management-based—such as adequate food provision, physical enrichment, and habitat dimensions—highlighting their practical applicability and relevance in identifying welfare issues and risk factors. Although these indirect indicators were more numerous, the top-ranked indicators in both protocols were animal-based, including signs of pain, affiliative behaviours, and abnormal repetitive behaviours. These are essential for accurately reflecting the animals’ welfare state and are therefore critical components of welfare assessment in captive non-human primates. This study demonstrates that welfare assessment tools can be effectively tailored to the specific needs of wildlife rescue centres, providing a robust foundation for enhancing welfare practices. These protocols not only offer practical approaches for assessing welfare but also underscore the importance of embedding animal welfare as a priority alongside conservation efforts. Future research should aim to refine these tools further, assess their implementation, and evaluate inter- and intra-observer reliability to ensure consistency across different settings. Full article

In 1982 a conservation project was initiated to restore glade communities in the Missouri Ozarks with a special emphasis on collared lizards (Crotophytus collaris), a state threatened species at the time. Starting in 1984, collared lizards were translocated onto restored glade habitats on Stegall Mountain in the Ozarks. The populations persisted but did not colonize other glades on Stegall until 1994, when prescribed fires included not only the glades, but also the surrounding woodland. Starting in 1999, landscape-level burns connected Stegall to three nearby mountains. The goal of this study was to test the hypothesis that expanding prescribed burns to the forested woodlands between Stegall Mountain and nearby mountains would create dispersal corridors for the colonization of glades on new mountains. Indeed, all three mountains were colonized and direct dispersal of marked lizards from Stegall was observed following the prescribed fires. Inter-mountain colonization dynamics and patterns varied: one was absorbed into the Stegall meta-population, another experienced a founder event followed by rapid colonization, and the third underwent repeated failed colonization attempts before successful establishment years later. These diverse patterns were consistent with differences in landscape resistance in the inter-mountain corridors rather than in geographical distance. Intra-mountain colonization patterns indicated that lizards assessed glade quality based on multiple factors. High landscape resistance resulted in a young age structure in the initial colonizing population. This young age structure interacted with the territorial behavior of collared lizards, age of reproduction, and probability of dispersal. This strong interaction between landscape resistance in the dispersal corridor and social behavior in the colonizing population is a novel factor in predicting colonization dynamics. Moreover, these results highlight the importance of social behavior on dispersal decisions versus habitat quality alone. Full article

Oxytocin (OT) has emerged as a central focus in stress regulation and animal welfare research. While commonly measured in blood, saliva, and urine, its presence in feces remains unexplored. Fecal OT (fOT) could be highly valuable for wildlife studies, where direct handling is impractical. This study explored OT detection in feces using lions (Panthera leo) as a model species. The objectives included developing a reliable fOT extraction protocol, describing baseline fOT patterns in captive lions, and evaluating its relationship with fecal glucocorticoid metabolites (fGM) under non-stressful conditions. Fecal samples from 16 lions in stable social groups across five Spanish zoos were collected over two to six weeks. A methanol-based extraction and commercial enzyme immunoassay were successfully validated for fOT quantification. Concentrations ranged from 3.00 to 296.64 ng OT/g of feces, with notable intra- and inter-individual variability. Age, sex, and contraceptive status had no significant influence on fOT (p > 0.05), but concentrations differed significantly between zoos (p < 0.001). No consistent relationship was found between fOT and fGM levels under baseline conditions. This study is the first to demonstrate OT detection in feces. The validated methodology provides a foundation for investigating fOT as a biomarker of stress and welfare in wild and domestic species. Full article

Breeding performance encompasses offspring production, their survival rate, fertility, overall reproductive outcome, timing of reproduction, and breeding frequency. It varies in raptor species, being affected by different biotic, abiotic, and anthropogenic factors. The Lesser Spotted Eagle is a monogamous, long-lived, slowly reproducing raptor, characterized by site-fidelity and strongly territorial behavior. In this study, we examined data collected over a 10-year period, highlighting the eagles’ main breeding parameters, analyzing whether any of them demonstrated significant trends or spatial or temporal differences over the study period. We also searched for a strict correlation between species breeding density and breeding performance. We found out that the mean occupancy rate of the territories marginally decreased β² = −0.64 ± 0.27, p = 0.047, as this process was clearly visible in Sakar Mnt. (β² = −0.66 ± 0.27, p = 0.038), where in 2022, only 67% of the monitored territories were occupied. The overall mean productivity, breeding success, and breeding frequency did not indicate any trend over the years (p > 0.05). Of all tested breeding parameters, occupancy rate (β² = 0.29 ± 0.14, p = 0.04) and breeding success (β² = −0.12 ± 0.06, p = 0.04) varied yearly, while productivity (β² = 0.25 ± 0.12, p = 0.03) and breeding frequency (β² = 0.27 ± 0.12, p = 0.03) were influenced by density. None of the tested indicators demonstrated significant regional differences, which indicated a temporally determinate, but spatially consistent pattern of breeding performance of the species in this part of its distribution. Recently, the landscape pattern in the south-eastern part of the country was marked by spectacular habitat loss, driven by human activities and natural phenomena, with entire biodiversity facing an uncertain future. Prompt action and urgent decisions are needed to prevent the negative consequences of these imminent threats to the species. Conservation efforts should be focused on the restoration of breeding and foraging habitats. Further research on the response of eagles to the effect of natural (fires) and anthropogenic (habitat transformation) factors, as well as the relationship between breeding performance and different drivers of reproduction, such as diet, weather, habitat features, and presence of intra- and interspecific competitors, would be of crucial significance. Full article

The majority of giant algal viruses belong to the family Phycodnaviridae, class Algavirales, phylum Nucleocytoviricota. Among them, the genus Chlorovirus is the most studied, with three recognized groups based on genomics and host range, although many fundamental questions remain to be elucidated, particularly regarding their diversity. In this study, we focus on betachloroviruses, a poorly explored subgroup that infects the alga Micractinium conductrix Pbi. Here, we describe the isolation and genomic analysis of 11 new betachloroviruses from water samples collected in Nebraska, USA. With 25 fully sequenced genomes now available, we assessed the genomic diversity of these viruses. They have double-stranded DNA genomes ranging from 295 to 374 kbp, encoding hundreds of ORFs, of which a large number (~40%) lack known function. Comparative genomics and phylogenetic analyses revealed three species of betachlorovirus, each with high intra-species genomic identity. Notably, some isolates with over 99.5% genomic identity display markedly different plaque phenotypes, which led us to propose the use of the term genomovar among giant algal viruses, a concept potentially applicable to other giant viral groups yet to be explored. Altogether, this work advances our understanding of betachloroviruses and highlights the importance of linking viral genotype to phenotype, opening new avenues for exploring the diversity of giant algal viruses. Full article

The potential of Trichoderma fungi as biocontrol agents has not yet been fully explored, as there is a large repertoire of inter- and intra-species variation in their phytopathogenic antagonistic effects due to different adaptations of individual Trichoderma strains. In the present study, we investigated the biocontrol efficacy of eight native isolates of Trichoderma spp. against the soilborne phytopathogens Sclerotinia sclerotiorum and Rhizoctonia solani and a representative of the Mucoromycota, Phycomyces blakesleeanus. An in vitro dual culture test showed a complete (100%) inhibition of S. sclerotiorum and P. blakesleeanus by each tested Trichoderma strain and a high (80–100%) inhibition of R. solani. The crude chloroform extracts, whose peptide contents were confirmed by thin-layer chromatography, caused a concentration-dependent reduction in the growth of the target fungi, with inhibition comparable to the effect of the peptaibol standard alamethicin. Despite the differences between fungi from the phyla Basidiomycota, Ascomycota, and Mucoromycota, their inhibition by alamethicin followed the same dose–response dependence. The growth inhibition of P. blakesleeanus induced by Trichoderma extracts was characterized by a significantly increased activity of antioxidative defense enzymes. Both variants of biocontrol agents, the native strains of Trichoderma spp. and their extracts, are efficient in controlling fungal growth and should be considered for the development of new potent bioformulations applicable in agriculture. Full article

Understanding how flowering phenology varies across spatial scales is essential for assessing plant responses to environmental heterogeneity under climate change. In this study, we investigated the flowering phenology of the plant species Taraxacum officinale across five sites in an agricultural region of Wanju, Republic of Korea. Each site contained five 1 m × 1 m quadrats, where the number of flowering heads was recorded at 1- to 2-day intervals during the spring flowering period (February to May). We applied the nlstimedist package in R to model flowering distributions and to estimate key phenological metrics including flowering onset (5%), peak (50%), and end (95%). The results revealed substantial variation in flowering timing and duration at both the intra-site (quadrat-level) and inter-site (site-level) scales. Across all sites, the mean onset, peak, end, and duration of flowering were day of year (DOY) 89.6, 101.5, 117.6, and 28.0, respectively. Although flowering onset showed relatively small variation across sites (DOY 88 to 92), flowering peak (DOY 97 to 108) and end dates (DOY 105 to 128) exhibited larger differences at the site level. Sites with dry soils and regularly mowed Zoysia japonica vegetation with minimal understory exhibited shorter flowering durations, while those with moist soils, complex microtopography, and diverse slope orientations showed delayed and prolonged flowering. These findings suggest that microhabitat variability—including landform type, slope direction, soil water content, and soil temperature—plays a key role in shaping local flowering dynamics. Recognizing this fine-scale heterogeneity is essential for improving phenological models and informing site-specific climate adaptation strategies. Full article

Antimicrobial resistance is a threat to probiotic microorganisms due to their potential role in harboring and transmitting resistance genes. This study focuses on two Bifidobacterium species (B. animalis subsp. lactis and B. longum) by analyzing 657 Minimal Inhibitory Concentration (MIC) values extracted from research articles indexed in Scopus, PubMed, and Web of Science, published since 2014, and considering 17 different antibiotics. MIC values were used for descriptive statistical analysis (boxplots and violin plots) to evaluate both inter- and intraspecies distributions. The results showed an overall increase in MIC values compared to historical data, with B. longum exhibiting high resistance to tetracyclines and streptomycin—approximately 25% to 50% of the strains had MIC values > EFSA cut-offs. The violin plots revealed the presence of resistant subpopulations, particularly within B. longum. These findings support the relevance of longitudinal MIC analysis as a tool for detecting early shifts in antimicrobial susceptibility and highlight the importance of data-driven approaches for microbiological risk assessment in probiotic applications. Full article

Caffeic acid-O-methyltransferase (COMT) is a key enzyme in lignin synthesis and secondary metabolism in plants, and it participates in the regulation of plant growth and development as well as plants’ stress response. To further investigate the function of COMT in grapevine, a total of 124 COMT family genes were identified from three Vitis species in this study, namely Pinot noir (Vitis vinifera L.), Vitis amurensis, and Vitis riparia. The amino acid sequence encoded by these genes ranged from 55 to 1422 aa, and their molecular mass ranged from 6640.82 to 77,034.43 Da. Subcellular localization prediction inferred that they were mainly located in the plasma membrane and cytoplasm. The prediction of secondary structures showed that α-helix and irregular coiled-coil were primary structural elements. These genes were unevenly distributed across 10 different chromosomes, respectively. Phylogenetic tree analysis of the amino acid sequences of VvCOMT, VaCOMT, VrCOMT, and AtCOMT proteins showed that they were closely related and were divided into four subgroups. The motif distribution was similar among the cluster genes, and the gene sequence was notably conserved. The 124 members of the COMT gene family possessed a variable number of exons, ranging from 2 to 13. The promoter region of all of these COMTs genes contained multiple cis-acting elements related to hormones (e.g., ABA, IAA, MeJA, GA, and SA), growth and development (e.g., endosperm, circadian, meristem, light response), and various stress responses (e.g., drought, low temperature, wounding, anaerobic, defense, and stress). The intraspecies collinearity analysis suggested that there were one pair, three pairs, and six pairs of collinear genes in Va, Pinot noir, and Vr, respectively, and that tandem duplication contributed more to the expansion of these gene family members. In addition, interspecific collinearity revealed that the VvCOMTs had the strongest homology with the VaCOMTs, followed by the VrCOMTs, and the weakest homology with the AtCOMTs. The expression patterns of different tissues and organs at different developmental stages indicated that the VvCOMT genes had obvious tissue expression specificity. The majority of VvCOMT genes were only expressed at higher levels in certain tissues. Furthermore, we screened 13 VvCOMT genes to conduct qRT-PCR verification according to the transcriptome data of VvCOMTs under abiotic stresses (NaCl, PEG, and cold). The results confirmed that these genes were involved in the responses to NaCl, PEG, and cold stress. This study lays a foundation for the exploration of the function of the COMT genes, and is of great importance for the genetic improvement of abiotic stress resistance in grapes. Full article

The number of Fritillaria species native to the Alps has long been debated, and observational biases due to the short flowering periods and the scattered distributions of endemic Fritillaria populations along the mountain range have probably made the task of botanists more complicated. Moreover, previous phylogenetic studies in Fritillaria have considered alpine taxa only marginally. To test species boundaries within the F. tubaeformis species complex and to study their phylogenetic relationships, intra- and inter-specific genetic variability of sixteen samples belonging to four Fritillaria species was carried out in different localities of the Maritime and Ligurian Alps, with extensions to the rest of the Alpine arc. The combined use of five plastid DNA markers (matK, ndhF, rpl16, rpoC1, and petA-psbJ) and nrITS showed that F. tubaeformis and F. burnatii are phylogenetically independent taxa, fully confirming morphological and morphometric divergences and, that F. burnatii is not related phylogenetically to the central European F. meleagris. Our phylogenetic study also supports the separation of F. tubaeformis from F. moggridgei, pointing to environment/ecological constraints or reproductive barriers as possible causes of their distinct evolutionary status. Our analysis also showed that the mountain endemic F. involucrata is not closely related to F. tubaeformis, contrasting with previous studies. The phylogenetic analysis of the nrITS region supports a close relationship between F. burnatii and F. moggridgei, but with low statistical support. Full article

Raspberry (Rubus idaeus L.) is a high-value horticultural crop recognized for its significant economic importance and exceptional nutritional profile. We analyzed 76 raspberry accessions (wild and cultivar) using simple sequence repeat (SSR) and sequence-related amplified polymorphism (SRAP) markers, and we established a standardized SRAP system for this species. Genetic similarity differed markedly between markers: SSR values spanned 0.47–0.98 (mean = 0.73), compared to the narrower range of 0.52–0.97 (mean = 0.75) for SRAP. Cultivar accessions exhibited higher intra-group homogeneity than wild accessions, and northeastern wild accessions showed more stable similarity metrics than Guizhou wild accessions. In hierarchical clustering, the resolution varied depending on the labeling marker. The cluster analysis by SSR markers identified two main clusters and further partitioned them into three clusters. In contrast, the SRAP system revealed two primary clusters, which subsequently diverged into five subclusters. SSR markers effectively captured population-level differentiation, whereas SRAP markers enabled precise discrimination of cultivars and ecotypes through non-coding region polymorphisms. Phylogenetic analyses confirmed closer genetic affinity between northeastern wild and cultivated accessions, which diverged significantly from Guizhou. This dual-marker approach revealed complementary information: SSR markers were used to survey genome-wide diversity, while SRAP markers were used to detect structural variations. Their integrated application enhances germplasm characterization efficiency and provides practical strategies for raspberry conservation and molecular breeding. Full article

The objectives were to evaluate the energy potential of biomass and pellets produced from five underutilized herbaceous and woody plant species in México and Colombia; characterize pellet quality parameters; and calculate the preliminary production costs and energy requirement during the densification process. Harvest and sawmill residues were obtained for five non-timber and woody plant species. The volatile compounds, ash, and fixed carbon were evaluated, as well as the higher heating value (HHV) and pellet impact resistance (PIR); in addition, lignin, hemicellulose, and cellulose were quantified. The data were analyzed using descriptive statistics, including mean and standard deviation. The volatile compounds ranged from 65.9–77.5%, ash 2.5–17.2%, fixed carbon 5.4–19.9%, HHV 16.4–21.9 MJ kg⁻¹, and PIR (0.6–99.1%). Considerable intra- and inter-specific differences were observed for all the variables, which expanded the options for the selection of biomass sources used in bioenergy production. Biomass processing costs ranged from 675.9 to 679.3 EUR t⁻¹. Optimization of these processes is required to implement more efficient technologies that significantly reduce operating costs in biomass use in biofuel industry. The systematic study of different plant species, both introduced and native, will provide new sources of biomass to produce bioenergy, fertilizers, and other organic inputs. Full article

Background: Geranylgeranyl pyrophosphate synthase (GGPS) is a pivotal enzyme in terpene biosynthesis, influencing the production of carotenoids, chlorophylls, and diverse phytohormones. This study aimed to identify and characterize the StGGPS gene family in potato (Solanum tuberosum) to elucidate its involvement in carotenoid synthesis and responses to abiotic stresses. Methods: Employing bioinformatics approaches, including HMMER, SMART, and Pfam, we conducted a genome-wide identification of StGGPS genes. Subsequent phylogenetic analysis, gene structure characterization, conserved motif detection, and synteny analysis were performed to investigate evolutionary relationships within the family. The expression patterns of StGGPS genes were then analyzed using RNA-seq data and quantitative real-time PCR (qRT-PCR) in potato tubers exhibiting different pigmentation and under drought and salt stress conditions. Results: Eleven StGGPS genes were identified, unevenly distributed across seven chromosomes, and classified into three subfamilies based on phylogenetic and structural analyses. Synteny analysis revealed one intra-genomic duplicate pair (StGGPS1/StGGPS4) and conserved orthologs with other Solanaceae species. Promoter analysis identified cis-elements related to light response and abiotic stress (e.g., ABRE and CGTCA-motif). Expression data showed differential regulation of StGGPS genes in colored tubers, with yellow and red tubers exhibiting higher expression of carotenoid-related genes. Under drought stress, StGGPS10 was significantly upregulated (5.2-fold, p < 0.001), while StGGPS6 showed salt-responsive induction (3.8-fold, p < 0.001), linking them to ABA signaling and cytoskeletal dynamics, respectively. Conclusions: This study provides a comprehensive overview of the StGGPS gene family, highlighting their roles in carotenoid biosynthesis and abiotic stress responses. The stress-specific expression patterns of StGGPS10 and StGGPS6 offer potential targets for genetic improvement of potato stress resilience. Full article

In recent decades, honeybee populations have declined, dramatically owing to destructive honey harvesting practices and the loss of foraging grounds and nesting sites. Among them, Apis laboriosa Smith, 1871 (Hymenoptera, Apidae), an important pollinator species found in the Himalayan region, holds significant economic and ecological value. However, conservation efforts and intraspecific taxonomic studies regarding it have been rather limited, and thus its full geographic range remains elusive. This study is the first to research A. laboriosa in Sichuan. Through a systematic study integrating morphological feature analysis and genomic data, the following conclusions are drawn. Whole-genome resequencing data analysis reveals that the Sichuan population forms a new monophyletic group (Bootstraps = 100). In the past ten thousand years, the population sizes of A. laboriosa in four different regions of China have been decreasing rapidly. Measures should be taken to protect them across the entire distribution range, especially the populations in Tibet and Sichuan, due to their relatively large genetic differences and low intra-population genetic diversity. Based on the significant difference analysis, the following four wing vein morphological features with extremely significant differences were identified: the width of the right forewing (FB), the cubital index a/b (Ci), the forewing vein angle (E9), and the forewing vein angle (K19). These findings are expected to offer a valuable reference for future A. laboriosa conservation endeavors, particularly in protecting populations with a high level of genetic differentiation. Full article