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28 pages, 395 KB  
Review
Integrating Transcriptomics and Metabolomics to Unravel the Molecular Mechanisms of Meat Quality: A Systematic Review
by Kaiyue Wang, Ren Mu, Yongming Zhang and Xingdong Wang
Foods 2026, 15(8), 1271; https://doi.org/10.3390/foods15081271 - 8 Apr 2026
Viewed by 374
Abstract
Meat quality serves as a pivotal determinant of consumer purchasing behavior and of the economic viability of the livestock industry; as such, research into its regulatory mechanisms is of critical significance for the development of modern agriculture. Traditional investigations into meat quality have [...] Read more.
Meat quality serves as a pivotal determinant of consumer purchasing behavior and of the economic viability of the livestock industry; as such, research into its regulatory mechanisms is of critical significance for the development of modern agriculture. Traditional investigations into meat quality have predominantly centered on sensory and physicochemical assessments of ultimate phenotypic traits, thereby facing inherent limitations in systematically deciphering the intricate molecular regulatory networks underlying meat quality formation. By contrast, an integrated analysis of the transcriptome and metabolome effectively connects the cascade of “gene transcription—metabolic regulation—phenotypic determination,” which has emerged as a core methodological paradigm in contemporary research on the molecular mechanisms governing meat quality. This review systematically delineates the evolutionary trajectory and principal technological frameworks of meat quality evaluation systems, with a focused synthesis of recent advances achieved through combined transcriptomic and metabolomic analyses in the field of meat quality regulation. The scope of this review encompasses core transcriptional regulatory networks associated with meat quality attributes, pivotal metabolic pathways, signal transduction mechanisms, and protein degradation dynamics. Furthermore, the regulatory impacts exerted by genetic variation among breeds, nutritional modulation, rearing environments, and stress responses on meat quality characteristics are comprehensively elucidated. Integrative analysis reveals that combined transcriptome–metabolome approaches transcend the inherent limitations of single-omics investigations, systematically unraveling the hierarchical regulatory mechanisms governing fundamental meat quality traits, such as muscle fiber type differentiation, postmortem glycolytic progression, intramuscular fat deposition, and flavor compound accumulation. Such integrative strategies have facilitated the identification of functional genes and metabolic biomarkers with potential utility for the early prediction of meat quality outcomes. Concurrently, this review acknowledges persistent challenges confronting the field, including the absence of standardized protocols for multi-omics data integration, insufficient functional causal validation, and a discernible disconnect between research discoveries and practical industrial implementation. Building upon this comprehensive assessment, prospective directions for future multi-omics research in meat quality are proposed, accompanied by the formulation of an integrated end-to-end improvement framework spanning fundamental research, technological innovation, and industrial application. Collectively, this review provides a systematic theoretical foundation for the in-depth elucidation of mechanisms that determine meat quality and the precision-oriented regulation of quality-determining traits in livestock production practices, thereby offering substantial scientific guidance for quality improvement initiatives within the animal husbandry sector. Full article
(This article belongs to the Section Meat)
22 pages, 3137 KB  
Article
Post-Chemotherapy Changes and Agreement of CT-Derived Body Composition at L3 and T12 in Older Patients with Metastatic Colorectal Cancer: Associations with Nutritional Indices and Outcomes
by Anıl Yıldız, Melin Aydan Ahmed, Nihan Nizam Eren, Abdulmunir Azizy, Selay Artan, Simay Çokgezer, Bedirhan Ulufer, Ozan Deniz Aygörmez, Gündüz Karaoğlan, Şirin Zelal Şahin Tırnova, Gulistan Bahat, Mustafa Durmaz, İnci Kızıldağ Yırgın, Senem Karabulut, Burak Sakar, Mehmet Akif Karan and Didem Taştekin
Nutrients 2026, 18(7), 1090; https://doi.org/10.3390/nu18071090 - 28 Mar 2026
Viewed by 369
Abstract
Background: Age- and cancer-related sarcopenia and malnutrition are common in older patients with colorectal cancer (CRC) and may negatively influence treatment tolerance and prognosis. However, the comparative prognostic value of post-chemotherapy changes in CT-based body composition parameters at the third lumbar vertebra (L3) [...] Read more.
Background: Age- and cancer-related sarcopenia and malnutrition are common in older patients with colorectal cancer (CRC) and may negatively influence treatment tolerance and prognosis. However, the comparative prognostic value of post-chemotherapy changes in CT-based body composition parameters at the third lumbar vertebra (L3) and the twelfth thoracic vertebra (T12) levels, and their associations with nutritional indices, remain unclear. This study aimed to examine and compare the prognostic relevance of post-chemotherapy body composition changes at L3 and T12 and to assess their relationship with nutritional indices in older patients with metastatic CRC (mCRC). Methods: This retrospective study included 87 older patients with mCRC. Baseline and ~3-month follow-up CT scans were analyzed at L3 and T12 using 3D Slicer to quantify skeletal muscle index (SMI), subcutaneous adipose tissue index (SATI), visceral adipose tissue index (VATI), visceral-to-subcutaneous fat ratio (VSR), and intramuscular adipose tissue index (IMATI). Changes (Δ) in CT-derived body composition after chemotherapy were calculated as percentage change using ((follow-up − baseline)/baseline) × 100. Prognostic Nutritional Index (PNI) and Geriatric Nutritional Index (GNRI), which are established nutritional assessment tools, were calculated from baseline laboratory/anthropometric data. Agreement between T12 and L3 was assessed, and associations with grade ≥ 3 toxicity, progression-free survival (PFS), and overall survival (OS) were evaluated using multivariable models and ROC analyses. Results: Mean age was 69.0 ± 4.5 years (59 male/28 female), and 26.4% developed grade ≥ 3 adverse events. Over 3 months, mean SMI declined significantly at both L3 (46.7 ± 8.8 → 42.8 ± 9.8 cm2/m2) and T12 (34.6 ± 8.2 → 31.6 ± 8.1 cm2/m2) (p < 0.001 for both), accompanied by decreases in VATI and VSR; T12-IMATI increased significantly. Baseline PNI showed a weak positive correlation with L3-SMI (r = 0.302, p = 0.033), whereas GNRI showed moderate correlations with SMI at L3 (r = 0.502, p < 0.001) and T12 (r = 0.317, p = 0.025) and was associated with longitudinal changes in muscle metrics. T12-SMI consistently yielded lower values than L3-SMI, and agreement varied by compartment (best for SATI; weakest for VSR). Lower GNRI and greater L3-SMI loss were independently associated with grade ≥ 3 toxicity; ΔL3-SMI showed the highest discrimination (AUC = 0.79, 95% CI = 0.69–0.87, p < 0.001; cut-off >5.1% loss). All patients progressed (median PFS 7.6 months); mortality was 82.8% (median follow-up: 25 months). In multivariable analysis, PFS, CRP, GNRI, and ΔL3-SMI remained independently associated with OS. ΔL3-SMI provided the strongest mortality discrimination (AUC = 0.85, 95% CI = 0.74–0.94, p < 0.001; cut-off >10.4% loss), while ΔIMATI was also informative (AUC = 0.71, 95% CI = 0.59–0.82, p = 0.023). Conclusions: In older patients with mCRC, early post-chemotherapy skeletal muscle loss—particularly at the L3 level—showed the strongest prognostic association with severe toxicity and mortality. GNRI provided complementary prognostic information as a marker of baseline immunonutritional reserve. Although T12-derived measurements were correlated with L3-derived values, systematic bias suggests that they should not be interpreted interchangeably for longitudinal risk stratification. Full article
(This article belongs to the Special Issue Nutrition and Dietary Guidelines for Colorectal Cancer Patients)
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12 pages, 268 KB  
Article
Relationship Between Dietary Protein Source (Soybean Meal vs. Canola Meal) and Meat Quality Traits in Feedlot-Fattened Indigenous Dairy Lambs
by Panagiotis Simitzis, Michael Goliomytis, Eirini Tsimpouri, Aphrodite I. Kalogianni, Marianna Lagonikou, Agori Karageorgou, Gregoria Dandoulaki, Efthimios Touranakos and Athanasios I. Gelasakis
Vet. Sci. 2026, 13(4), 327; https://doi.org/10.3390/vetsci13040327 - 27 Mar 2026
Viewed by 324
Abstract
Although soybean meal (SBM) is generally used as the main protein source in livestock diets, canola meal (CM) appears as a sustainable alternative, since it lowers diet cost, especially when regionally produced, while still meeting animal nutritional needs. The objective of this study [...] Read more.
Although soybean meal (SBM) is generally used as the main protein source in livestock diets, canola meal (CM) appears as a sustainable alternative, since it lowers diet cost, especially when regionally produced, while still meeting animal nutritional needs. The objective of this study was therefore to assess the effects of dietary protein source (SBM vs. CM) on carcass traits and meat quality characteristics of feedlot-fattened dairy lambs. A total of 193 weaned lambs, approximately 3 months of age, from two indigenous Greek dairy breeds (75 Chios and 118 Serres), were used. Lambs were randomly assigned to one of two isocaloric and isonitrogenous dietary treatments: a control ration containing SBM as the primary protein source, and an alternative ration in which SBM was completely replaced by CM. After a fattening period of 13 weeks for Chios lambs and 15 weeks for Serres lambs, animals were slaughtered upon reaching a live weight of 35–40 kg, and hot and cold carcass weights were recorded. After 24 h of carcass storage at 4 °C, Longissimus lumborum muscle was sampled and used for the measurement of pH, colour attributes, cooking loss, shear force, and intramuscular fat content. Lipid oxidation was evaluated on days 1, 3, 6, and 9 of refrigerated storage at 4 °C. The substitution of SBM by CM as the main dietary protein source did not affect carcass traits in Serres lambs, whereas CM- treated Chios lambs showed an increased hot and cold carcass weight (p < 0.05). Meat quality characteristics were not affected by the dietary treatment in either Chios or Serres lambs, with the exception of meat oxidative stability that was deteriorated in CM compared to SBM Serres lambs (p < 0.001). In conclusion, the utilization of canola instead of soybean meal did not negatively influence carcass traits or meat quality characteristics in either Chios or Serres lambs, with the exception of lipid oxidation which was significantly higher in CM supplemented Serres lambs. Full article
(This article belongs to the Special Issue From Barn to Table: Animal Health, Welfare, and Food Safety)
11 pages, 1145 KB  
Article
Identification of Candidate Causal Polymorphisms in GGT1 and SLC5A1 Associated with Fat Area Ratio on BTA17 in Japanese Black Cattle
by Shinji Sasazaki, Hikari Ito, Ryoto Adachi, Eiji Iwamoto, Emi Yoshida, Fuki Kawaguchi, Kenji Oyama and Hideyuki Mannen
Genes 2026, 17(4), 363; https://doi.org/10.3390/genes17040363 - 24 Mar 2026
Viewed by 244
Abstract
Background/Objectives: Intramuscular fat deposition is a key determinant of beef quality in Japanese Black cattle, and the fat area ratio of the rib eye (FAR) is highly correlated with Beef Marbling Standard scores. Methods: To identify genetic variants underlying variation in [...] Read more.
Background/Objectives: Intramuscular fat deposition is a key determinant of beef quality in Japanese Black cattle, and the fat area ratio of the rib eye (FAR) is highly correlated with Beef Marbling Standard scores. Methods: To identify genetic variants underlying variation in the FAR, we conducted a genome-wide association study (GWAS) followed by whole-genome sequence–based fine mapping in a Hyogo Japanese Black population (n = 432). Animals were genotyped using the Illumina BovineSNP50v3 BeadChip, and association analysis was performed using residuals derived from a linear mixed model accounting for fixed and random effects. Results: A significant association signal was detected on BTA17 (λ = 1.09), with the top single nucleotide polymorphism (SNP) located at 17:72,329,662 (p = 3.60 × 10−6). To refine the candidate region, we analyzed whole-genome resequencing data from 42 Hyogo Japanese Black cattle and identified a distinct linkage disequilibrium (LD) block spanning 71–74 Mbp on BTA17. Among 4292 variants within genes showing LD (r2 ≥ 0.1) with the top SNP, 96 variants with strong LD and predicted functional effects were selected for validation. Genotyping in the Hyogo population revealed that a missense variant in gamma-glutamyltransferase 1 (GGT1) (c.589G>A, p.Asp197Asn) showed the strongest association with FAR (p = 3.89 × 10−6). A 5′UTR variant in GGT1 (c. −256G>T) and a missense variant in solute carrier family 5 member 1 (SLC5A1) (c.32C>T, p.Thr11Met) also exhibited significant associations and strong LD with the top SNP (r2 > 0.7). GGT1 is involved in glutathione metabolism, whereas SLC5A1 encodes a sodium–glucose cotransporter implicated in nutrient sensing and metabolic regulation. Conclusions: Although functional validation is required, these variants represent strong positional and biological candidates underlying the BTA17 quantitative trait loci (QTL). The identified polymorphisms may provide useful molecular markers for optimizing genetic improvement of marbling-related traits within the Hyogo Japanese Black population. Full article
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10 pages, 343 KB  
Communication
Finishing Performance, Meat Quality, and Economic Efficiency of Retired Thoroughbred Versus Belgian-Cross Geldings Under an Identical Total Mixed Ration: A Pilot Study
by Chanwool Park, Chansung Jeong, Miyeon Son and Junkoo Yi
Vet. Sci. 2026, 13(3), 280; https://doi.org/10.3390/vetsci13030280 - 18 Mar 2026
Viewed by 216
Abstract
This study evaluated a 181-day finishing system for horses entering the Korean meat chain by comparing retired thoroughbred geldings and Belgian-crossbred geldings under identical management and an ad libitum forage-based total mixed ration. Ten geldings (n = 5 per group) were individually [...] Read more.
This study evaluated a 181-day finishing system for horses entering the Korean meat chain by comparing retired thoroughbred geldings and Belgian-crossbred geldings under identical management and an ad libitum forage-based total mixed ration. Ten geldings (n = 5 per group) were individually housed, with body weight and feed intake recorded monthly. After slaughter, carcass traits and meat quality grade were assessed, and longissimus thoracis et lumborum samples were analyzed for proximate composition. Belgian-crossbreds consumed more dry matter (18.68 vs. 13.60 kg DM/day), corresponding to 2.3% vs. 2.4% of body weight, but showed markedly greater growth (average daily gain 1.063 vs. 0.290 kg/day) and higher gain-to-feed (0.059 vs. 0.024) than retired Thoroughbreds. Carcass weight and marbling-related traits favored Belgian-crossbreds, including higher intramuscular fat in longissimus thoracis et lumborum (9.15% vs. 3.22%). Despite higher total feed cost per head, the economic feed conversion ratio was substantially lower in Belgian-crossbreds (13,133 vs. 35,088 KRW/kg gain), resulting in a positive gross margin estimate, whereas retired Thoroughbreds showed a negative margin under the same system. These results suggest that meat-type horses may be better suited to short, intensive finishing, while alternative utilization or tailored finishing strategies may be needed for retired racehorses. Full article
(This article belongs to the Special Issue The Behavior, Management, and Welfare of Horses)
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20 pages, 7803 KB  
Article
Integrated miRNAs, Transcriptome, and Metabolome Uncover Underlying Mechanisms for Breast Muscle Metabolic Regulation in Liancheng White and Cherry Valley Ducks
by Linli Zhang, Xiaopan Liu, Li Li, Liang Huang, Zhiming Zhu, Zhongwei Miao, Nenzhu Zheng and Qingwu Xin
Animals 2026, 16(6), 934; https://doi.org/10.3390/ani16060934 - 16 Mar 2026
Viewed by 307
Abstract
Meat quality characteristics are important economic traits of ducks. To identify the molecular bases of these traits, we performed an integrated multi-omics analysis (metabolomics, transcriptomics, and miRNAomics) that compared the breast muscle of 300-day-old Liancheng white duck (LD), which is a lean-type breed [...] Read more.
Meat quality characteristics are important economic traits of ducks. To identify the molecular bases of these traits, we performed an integrated multi-omics analysis (metabolomics, transcriptomics, and miRNAomics) that compared the breast muscle of 300-day-old Liancheng white duck (LD), which is a lean-type breed prized for its soup flavor, and traditional meat duck Cherry Valley duck (CD), which is a fast-growing fat-type breed used for roasting. The results show that LD had higher levels of amino and bile acids, while CD had higher levels of carbohydrates. Integration analysis revealed key breed-specific molecular signatures. In LD, upregulation of the amino acid transporters SLC7A6 and SLC6A9 related to amino acid transport was consistent with elevated intramuscular amino acids. For carbohydrate metabolism, SOCS3—a well-established negative regulator of glucose uptake in mammalian skeletal muscle—was significantly upregulated in LD, consistent with their lower intramuscular carbohydrate levels. SLC6A9 and SOCS3 were predicted to be negatively regulated by oan-miR-1386. In LD, upregulation of the bile acid biosynthesis gene CH25H paralleled the higher bile acid content, suggesting complex, tissue-specific regulation of these pathways. This integrated analysis provides a resource for candidate genes, miRNAs, and metabolic pathways underlying breed-specific meat quality traits in ducks. The findings generate testable hypotheses for future functional studies and offer potential molecular targets for breeding strategies aimed at improving poultry meat quality. Full article
(This article belongs to the Section Poultry)
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15 pages, 283 KB  
Article
Evaluating Beef Fatty Acid Composition and Lipid Quality in Response to Silage Type and Feeding Intensity During the Finishing Phase
by Zenon Nogalski and Martyna Momot
Animals 2026, 16(6), 923; https://doi.org/10.3390/ani16060923 - 15 Mar 2026
Viewed by 280
Abstract
The quality of beef fat depends on both intramuscular fat (IMF) content and fatty acid (FA) composition, which can be modulated by finishing diets. This study evaluated the effects of silage type and feeding intensity on IMF deposition, FA profile, desaturase indices, and [...] Read more.
The quality of beef fat depends on both intramuscular fat (IMF) content and fatty acid (FA) composition, which can be modulated by finishing diets. This study evaluated the effects of silage type and feeding intensity on IMF deposition, FA profile, desaturase indices, and lipid quality indices in finishing Holstein–Friesian bulls. Thirty-two bulls were assigned to a 2 × 2 factorial design (n = 8/group) and fed total mixed rations for 120 days based on grass silage or maize silage, under intensive (≈50:50 forage:concentrate, DM basis) or semi-intensive feeding (≈70:30). FA composition of longissimus lumborum lipids was determined by GC-FID, and lipid quality indices were calculated, including the atherogenic index (AI), thrombogenic index (TI), and the hypocholesterolemic/hypercholesterolemic ratio (h/H). Feeding intensity increased IMF content (p = 0.001) and the absolute amounts of major FA classes (g/100 g meat). Silage type primarily affected FA composition by increasing n-3 PUFA and lowering the n-6/n-3 ratio in grass silage diets (p = 0.042). Several FAs showed silage type × feeding intensity interactions (p < 0.05), indicating that the response to dietary energy supply depended on the forage base. Overall, feeding intensity mainly regulated lipid deposition, whereas silage type modulated the nutritional profile of intramuscular fat. Full article
13 pages, 257 KB  
Article
Comparison of Carcass Composition and Meat Quality of the Guinea Fowl (Numida meleagris) and the Common Pheasant (Phasianus colchicus L.)
by Marcin Wegner, Dariusz Kokoszyński, Marek Kotowicz and Monika Lubawińska
Animals 2026, 16(6), 908; https://doi.org/10.3390/ani16060908 - 13 Mar 2026
Viewed by 484
Abstract
This study aimed to compare carcass composition and selected meat quality traits of guinea fowl (Numida meleagris) and common pheasant (Phasianus colchicus L.) reared under the production conditions applied in this experiment. The study material consisted of 32 birds, including [...] Read more.
This study aimed to compare carcass composition and selected meat quality traits of guinea fowl (Numida meleagris) and common pheasant (Phasianus colchicus L.) reared under the production conditions applied in this experiment. The study material consisted of 32 birds, including 16 male common pheasants and 16 male guinea fowl, all slaughtered at 13 weeks of age. The analysis revealed significant differences (p < 0.05) between the two groups in carcass composition and several meat quality parameters. Under the given rearing conditions, guinea fowl were characterized by higher body and carcass weight, as well as weights of individual carcass components, compared to pheasants. They also showed higher carcass yield and greater proportions of certain elements, including leg muscles, skin with subcutaneous fat, and wings, whereas pheasants exhibited a higher proportion of breast muscles and neck. Guinea fowl had higher absolute masses of meat, fat, and bones, but a lower meat-to-fat ratio. No significant differences between groups were observed for the meat-and-fat-to-bone ratio or the meat-to-bone ratio. The highest protein content was recorded in the breast muscles of pheasants (27.1%), while the lowest was found in the leg muscle of guinea fowl (22.1%). Differences between the groups were also observed in intramuscular fat and water content in both breast and leg muscles, as well as in collagen content in the breast muscle. Regardless of group, breast muscles were characterized by higher protein content and lower fat and collagen levels than leg muscles. Differences were further noted in electrical conductivity (EC) and the a* and b* color parameters in both muscle types. Breast muscles exhibited lower pH and a* values but higher EC and L* values than leg muscles in both groups. Textural traits of the breast muscles, including cohesiveness, springiness, and chewiness, were higher in guinea fowl, whereas hardness and Warner–Bratzler shear force (WB) were lower compared to pheasants. However, these differences should be interpreted with caution, as the birds were reared under different feeding and management systems, which may have contributed to the observed variation. Overall, the results provide comparative data on carcass composition and meat quality of guinea fowl and pheasants under the studied production conditions. These findings may serve as a basis for further controlled studies designed to more clearly isolate species effects and to evaluate their potential relevance for poultry production. Full article
(This article belongs to the Special Issue Featured Papers in the 'Animal Products' Section)
21 pages, 1262 KB  
Article
Application of the “Yuyang Muxin” Breeding Chip in Huang-Huai Sheep: A Six-Year Comprehensive Evaluation of Production and Meat Quality Traits
by Kai Quan, Haoyuan Han, Kun Liu, Caihong Wei, Huihua Wang, Meilin Jin, Wei Sun, Huibin Shi and Jun Li
Animals 2026, 16(6), 884; https://doi.org/10.3390/ani16060884 - 12 Mar 2026
Viewed by 284
Abstract
The Huang-huai sheep (Dorper × Small-tailed Han), certified in China in 2019, initially exhibited issues with genetic uniformity and meat quality. A six-year (2020–2025) breeding program was conducted at two core farms (collectively housing ~2400 breeding ewes representing 12 bloodlines) using the custom [...] Read more.
The Huang-huai sheep (Dorper × Small-tailed Han), certified in China in 2019, initially exhibited issues with genetic uniformity and meat quality. A six-year (2020–2025) breeding program was conducted at two core farms (collectively housing ~2400 breeding ewes representing 12 bloodlines) using the custom “Yuyang Muxin” 10 K SNP chip containing functional markers for reproduction (FecB), growth (CLPG, ACTC1), and meat quality (FABP3, CIDEa). Genotyping and marker-assisted selection were integrated with BLUP breeding values. After six years, favorable FecB genotype frequency increased from 68.97% to 82.58% (p < 0.05), while genetic diversity remained stable (FIS < 0.05). Mixed model analysis accounting for farm and year random effects revealed significant genetic gains: 6-month ram body weight increased by 9.1% (58.50 to 63.80 kg, p < 0.05), dressing percentage improved from 56.02% to 57.8% (p < 0.05), and loin muscle area expanded by 9.4% (24.50 to 26.8 cm2, p < 0.05). Meat quality was enhanced, with shear force decreasing by 14.1% (38.65 to 33.20 N, p < 0.05) and intramuscular fat increasing by 40.0% (2.0% to 2.8%, p < 0.05). Lambs weaned per ewe per year increased from 2.38 to 2.56 (p < 0.05). EBV trend analysis confirmed that improvements were primarily genetic. After Bonferroni correction, CIDEa expression was strongly correlated with intramuscular fat (r = 0.89, p < 0.001) and FABP3 expression with arachidonic acid (r = 0.70, p < 0.001). Nine months was identified as the optimal slaughter age. The “Yuyang Muxin” breeding chip effectively accelerated genetic improvement in Huang-huai sheep, enabling synergistic enhancement of multiple traits. Full article
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12 pages, 1176 KB  
Article
Effects of Oleic Acid and Intramuscular Fat Levels on Retronasal Aromas in Wagyu Beef from Japanese Black Cattle
by Naoaki Obana, Yuri Yoshida, Kazunori Matsumoto and Masakazu Irie
Foods 2026, 15(6), 994; https://doi.org/10.3390/foods15060994 - 11 Mar 2026
Viewed by 477
Abstract
This study aimed to evaluate the effects of various levels of intramuscular fat (IMF) and oleic acid (C18:1 cis-9) on retronasal aromas in Wagyu beef. Muscle samples were collected from 167 carcasses of Japanese Black. The chemical compositions were analyzed, and the cooked [...] Read more.
This study aimed to evaluate the effects of various levels of intramuscular fat (IMF) and oleic acid (C18:1 cis-9) on retronasal aromas in Wagyu beef. Muscle samples were collected from 167 carcasses of Japanese Black. The chemical compositions were analyzed, and the cooked beef was evaluated by a trained sensory panel. Tenderness, juiciness, and fatty aroma were mainly related to the IMF content. Both sweet and Wagyu beef aromas were affected by the oleic acid and IMF contents. In marbled beef with low IMF content, both sweet and Wagyu beef aromas were stronger as the oleic acid composition increased (r = 0.401, 0.376); however, their relationships were weaker at the moderate IMF content (r = 0.278, 0.273). The effect of oleic acid on these aromas was hardly observed in beef with high IMF content (r = 0.030, 0.011). The oleic acid index [IMF content (%) × oleic acid composition (%)/100] could be fitted to the logarithmic curve for all the aromas determined (r = 0.526 to 0.565). These results indicated that the higher oleic acid composition could be better for the favorable aromas of Wagyu beef; however, the effect differs depending on the IMF content levels, and the phenomenon is relatively well explained by the oleic acid index. Full article
(This article belongs to the Section Meat)
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17 pages, 303 KB  
Article
The Effect of Sex on Meat Quality of Muscovy Ducks Reared in Backyard Production System
by Jitka Edrová, Adriana Hofmanová, Lukáš Zita, Monika Okrouhlá, Darina Chodová, Lucie Kruntová and Ondřej Krunt
Poultry 2026, 5(2), 23; https://doi.org/10.3390/poultry5020023 - 6 Mar 2026
Viewed by 813
Abstract
Sexual dimorphism is a well-recognized factor influencing growth performance and meat quality in poultry; however, its effects remain less explored in Muscovy ducks. This study investigated the effect of sex on carcass traits, meat quality parameters, muscle fiber characteristics, and lipid composition in [...] Read more.
Sexual dimorphism is a well-recognized factor influencing growth performance and meat quality in poultry; however, its effects remain less explored in Muscovy ducks. This study investigated the effect of sex on carcass traits, meat quality parameters, muscle fiber characteristics, and lipid composition in 14-week-old Muscovy ducks. Carcass dissection, physical and chemical meat analyses, and histological evaluation of breast muscle were performed in males and females. Sex markedly affected carcass performance, with males exhibiting higher live, slaughter, semi-eviscerated, and eviscerated weights, whereas females showed greater abdominal fat deposition and higher drip and processing losses, indicating reduced water-holding capacity. In the breast muscle, females displayed lower ultimate pH, higher yellowness (b*), and lower shear force values, suggesting more tender meat. Chemical composition differed between sexes, with males showing higher moisture and protein contents and lower intramuscular fat, accompanied by sex-related differences in fatty acid composition. Muscle fiber morphology also varied significantly, as males exhibited larger fiber diameters and cross-sectional areas in the breast muscles. Overall, these findings demonstrate that sex is a critical determinant of carcass yield, technological meat properties, and nutritional quality in Muscovy ducks, highlighting its importance for targeted production and processing strategies. Full article
17 pages, 1263 KB  
Article
Meat Quality Differences Between Ganan Tibetan Sheep and Tianzhu Tibetan Sheep Using Metabolomics and Rumen Microbiota Analyses
by Yayuan Yang, Xindong Luo, Di Lu, Pengcheng Du, Sanye Jier, Xiaohu Wu, Yanan Lv, Pengcheng Dong and Xuezhi Ding
Microorganisms 2026, 14(3), 575; https://doi.org/10.3390/microorganisms14030575 - 3 Mar 2026
Viewed by 465
Abstract
The objective of this study was to investigate the relationships between ruminal microbial communities and carcass traits associated with adipose accumulation in two Tibetan sheep breeds—Gannan and Tianzhu. A total of twenty Tibetan sheep (ten from each breed) were slaughtered, and samples of [...] Read more.
The objective of this study was to investigate the relationships between ruminal microbial communities and carcass traits associated with adipose accumulation in two Tibetan sheep breeds—Gannan and Tianzhu. A total of twenty Tibetan sheep (ten from each breed) were slaughtered, and samples of ruminal contents along with carcass trait data were collected for analysis. Ruminal microbial DNA was analyzed by 16S rRNA gene sequencing, and correlations between microbial composition and carcass traits were examined using correlation analysis and one-way ANOVA. The results showed that marbling score (p = 0.001) and longissimus lipid content (p = 0.007) were positively correlated with the Chao1 richness index, indicating that individuals with higher intramuscular fat content had greater ruminal microbial species richness. At the phylum level, Rikenellaceae RC9 gut group, Ruminococcaceae NK4A214 group were negatively correlated (p ≤ 0.05) with the above fat traits, whereas the abundance of the bacterial family Ruminococcus 1 was positively correlated with marbling score (p = 0.002). Stratified analysis by marbling grade further revealed associations with microbial richness (p ≤ 0.063), diversity (p = 0.044), and Ruminococcus 1 abundance (p < 0.001). However, microbial metabolic pathway prediction showed no significant differences (p ≥ 0.05) between the high- and low-marbling groups. In addition, several microbial taxa were positively correlated (p ≤ 0.05) with rib fat thickness and yield grade. In summary, ruminal microbial composition was closely associated with variations in carcass fat traits. Notably, most of the bacterial taxa associated with intramuscular and subcutaneous fat deposition did not overlap, suggesting that microbial metabolites may regulate fat deposition by influencing distinct adipogenic pathways in the host. Full article
(This article belongs to the Special Issue Rumen Microorganisms)
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21 pages, 10193 KB  
Article
Meat Quality Differences Correlated with Rumen Microbiota and Lipid Metabolism in Beef Cattle vs. Castrated Cattle
by Meng Liu, Nan Su, Zhen Ma, Wenzhong Chen, Yuxia Zhang, Xiangmin Yan and Wujun Liu
Int. J. Mol. Sci. 2026, 27(5), 2296; https://doi.org/10.3390/ijms27052296 - 28 Feb 2026
Viewed by 437
Abstract
Intramuscular fat (IMF) significantly influences meat quality, particularly flavor. The gastrointestinal microbiota can regulate lipid metabolism. The relationship between intramuscular fat metabolism, rumen microbiota, and beef quality remains unclear. This study enrolled 22 30-month-old Xinjiang Brown Beef cattle, which were randomly allocated to [...] Read more.
Intramuscular fat (IMF) significantly influences meat quality, particularly flavor. The gastrointestinal microbiota can regulate lipid metabolism. The relationship between intramuscular fat metabolism, rumen microbiota, and beef quality remains unclear. This study enrolled 22 30-month-old Xinjiang Brown Beef cattle, which were randomly allocated to two groups: an intact bull group (n = 15) and a castrated bull group (n = 7). All experimental animals were housed and maintained under consistent feeding and management conditions throughout the entire experimental period. By combining in vivo ultrasonography, slaughter trials, rumen microbiome diversity analysis, and metabolomics techniques, and after adjusting for covariates including intramuscular fat (IMF) content, body weight, and backfat thickness, the present study demonstrated that castration regulates muscle lipid metabolism by reshaping the composition of the rumen microbial community, thereby exerting a cascading effect on key beef quality traits. (1) Production and meat quality: Live weight, carcass weight, eye muscle area, backfat thickness, and intramuscular fat (IMF) content were significantly higher in the YN group than in the GN group (p < 0.01). Conversely, dressing percentage, shear force value, and muscle protein content were significantly lower in the YN group than in the GN group (p < 0.01 or p < 0.05). (2) Rumen microbiota–metabolite correlation: Significant differences existed in microbial composition and community structure between groups (with significant differences in both α and β diversity). Core microbes regulated by castration exhibited distinct co-variation patterns with metabolites: genera such as Anaeroplasma showed significant positive correlations with hydroxy fatty acids, while Sharpea and others showed significant negative correlations with saturated fatty acids. (3) Microbial–metabolite axis and host phenotype correlation: Axes composed of Eubacterium uniforme and others showed significant positive correlations with IMF, while Docosapentaenoic acid (22n-3) exhibited significant negative correlations with IMF. Anaeroplasma and others showed significant positive correlations with oleic acid and others, as well as BFT, while saturated fatty acids showed significant negative correlations with BFT. (4) Covariate validation: After adjusting for covariates including body weight, backfat thickness, and IMF, castration was confirmed to significantly regulate the abundance/content of core genera such as Anaeroplasma, Eubacterium uniforme, as well as key metabolites such as hydroxy fatty acids and docosapentaenoic acid (22n-3) (p < 0.05 after adjustment), making it a core driver regulating rumen microbial composition and muscle lipid metabolism. After adjustment, the regulatory effects of IMF, body weight, and backfat thickness on the aforementioned microorganisms and metabolites were no longer significant (adjusted p > 0.05). Intramuscular fat (IMF), body weight, and backfat thickness are not independent drivers but rather indirect effects resulting from castration-induced physiological state remodeling. This study did not include feeding rate measurements, which represents a limitation. Future research should incorporate this data to further validate the conclusions. This study elucidates the interactive mechanisms between rumen microbiota and their metabolites, identifies the key pathways governing intramuscular fat (IMF) deposition, pinpoints potential regulatory targets for beef quality optimization, and clarifies the intermediate regulatory mechanisms underlying the modulation of meat quality traits by castration. Full article
(This article belongs to the Special Issue Domestic Animal Genetics, Genomics, and Molecular Breeding)
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18 pages, 6982 KB  
Article
Validation of Three-Dimensional Magnetic Resonance Imaging-Based Volumetric Quantification for Fatty Infiltration in a Rabbit Model of Chronic Rotator Cuff Tears
by Jieun Kwon, Hyeon Jang Jeong, Sheng-Chen Han and Joo Han Oh
Diagnostics 2026, 16(5), 705; https://doi.org/10.3390/diagnostics16050705 - 27 Feb 2026
Viewed by 343
Abstract
Backgrounds/Objectives: Fatty infiltration (FI) of rotator cuff (RC) muscles is a critical prognostic factor after surgical repair. While the Goutallier–Fuchs grading system is widely used, its reproducibility is often debated. This study aimed to validate a previously reported three-dimensional (3D) magnetic resonance imaging [...] Read more.
Backgrounds/Objectives: Fatty infiltration (FI) of rotator cuff (RC) muscles is a critical prognostic factor after surgical repair. While the Goutallier–Fuchs grading system is widely used, its reproducibility is often debated. This study aimed to validate a previously reported three-dimensional (3D) magnetic resonance imaging (MRI)-based volumetric quantification method by comparing it with histologic findings in a chronic rotator cuff tear (RCT) rabbit model. Methods: Eighteen shoulders from nine rabbits were randomly assigned to three groups (n = 6 each): repair (A), chronic tear (B), and control (C). In groups A and B, a chronic RCT model was established by detaching the supraspinatus tendon, with group A receiving repair after six weeks. At 12 weeks after repair, 7.0T MRI was performed, and volumetric quantification of intra-muscular fat was performed using semi-automated 3D Slicer software. Histologic fat proportion was measured via Oil Red O staining and ImageJ analysis. Results: The muscle weight and MRI-based muscle volume were significantly lower in group B than group C (p < 0.05). The radiologically measured fat proportion was significantly higher in groups A (1.8 ± 0.8) and B (2.8 ± 0.7) compared to group C (0.5 ± 0.4, p < 0.001). Histologic analysis showed a corresponding pattern (3.0 ± 1.2%, 5.2 ± 1.0%, 1.7 ± 1.0% for groups A, B, and C, respectively; p < 0.001). A strong positive correlation was identified between the radiologic and histologic measurements of FI (r = 0.784, p < 0.001). Conclusions: Direct histologic comparison validates the reliability of 3D MRI-based volumetric quantification for evaluating FI of the RC muscle in a chronic RCT rabbit model. This objective approach may address the inherent limitations of the conventional qualitative grading system. Full article
(This article belongs to the Section Medical Imaging and Theranostics)
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25 pages, 1250 KB  
Article
Effects of Enzymes or Fermented Feed on Nitrogen Balance, Meat Quality, Intestinal Microbiota Profile and Barrier Functions of Landrace × Rongchang Pigs Fed with a Diversified Low-Protein Diet
by Cunji Shui, Jiayao Liao, Jingjing Wang, Zhiru Tang, Renli Qi, Qi Wang, Sishen Wang, Yetong Xu and Zhihong Sun
Vet. Sci. 2026, 13(3), 219; https://doi.org/10.3390/vetsci13030219 - 26 Feb 2026
Viewed by 617
Abstract
Reducing the dependence on traditional protein sources, and decreasing feeding costs and nitrogen emissions, are important tasks in livestock production. A 5 × 5 Latin square nitrogen balance trial (five castrated male pigs) and an animal growth experiment with 120 Landrace × Rongchang [...] Read more.
Reducing the dependence on traditional protein sources, and decreasing feeding costs and nitrogen emissions, are important tasks in livestock production. A 5 × 5 Latin square nitrogen balance trial (five castrated male pigs) and an animal growth experiment with 120 Landrace × Rongchang pigs were performed and randomly divided into five diets: a normal crude protein level diet (CON); LP diet; diversified LP containing broken rice, rapeseed meal, and DDGS (DLP); DLP + 0.05% cellulase (DLP + CE); and DLP + 20% fermented feed (FDLP). The CON group showed higher nitrogen intake, urinary nitrogen, and total nitrogen excretion than the other four groups (p < 0.05). The fecal nitrogen was decreased with the LP, DLP + CE, and FDLP groups compared to the CON group (p < 0.05). The mRNA expression of jejunal fatty acid transport protein 1 was upregulated in the LP, DLP + CE, and FDLP groups compared to the CON and DLP groups (p < 0.05). The DLP + CE group showed a higher intramuscular fat content in pigs than the CON and DLP groups (p < 0.05). In the LD muscle, the FDLP and DLP + CE groups upregulated fatty acid synthase expression compared to the LP and DLP groups (p < 0.05). Colonic mRNA expression of zonula occludens-1 and claudin-1 was upregulated in the FDLP group compared to the CON and DLP groups (p < 0.05). These results suggest that the supplementation of cellulase and fermented feed in DLP diets improved nitrogen utilization and intestinal health without compromising growth performance or meat quality in Landrace × Rongchang pigs. Full article
(This article belongs to the Special Issue Swine Nutrition and Feed)
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