Search Results (3,759)

Live bait fishing, which was initiated around the 1950s on the coast of Dakar for the exploitation of tropical tunas, remains poorly studied. This study aims to examine the ichthyological diversity in Hann Bay and analyze the seasonal variation in species used as live bait. Ten experimental fishing campaigns were conducted between February and November 2023, using a beach seine and a purse seine. Captured individuals were sorted by species, counted, and weighed. Salinity and temperature drive seasonal changes in live bait fish communities in Hann Bay. Beach seine captured 389,171 individuals from 65 species, representing a biomass of 1743 kg. Purse seine yielded 9408 individuals from 62 species, representing a total of 306 kg. Ten species were identified as live bait, ten of which were caught with beach seine (Engraulis encrasicolus dominated) and eight with purse seine (Sardinella maderensis dominated). Eight of the ten live bait species were caught by both purse seine and beach seine. For beach seine, Shannon’s index was higher during the cold season, indicating a better distribution of species abundance. For purse seine, species abundance was lower in the cold season. Pielou’s evenness index indicated a more balanced assemblage in the cold season for beach seine (0.65) and in the warm season for purse seine (0.74). The number and weight of live baits did not vary significantly between seasons. These results may support the sustainable management of coastal small pelagics, whose juveniles are used as live bait. Full article

Identifying robust differentially expressed genes (DEGs) in RNA-Seq data remains challenging under variable experimental conditions. To address this, we performed five independent RNA-Seq experiments using Drosophila melanogaster larvae treated with methyl lucidone—a putative juvenile hormone disruptor—and compared conventional normalization methods (relative log expression [RLE] via DESeq2 and trimmed mean of M-values [TMM] via edgeR) against our novel DEG-by-index ratio transformation (DiRT). DESeq2 identified two significant DEGs, while edgeR detected none; both methods showed limited validation across four additional independent experiments. In contrast, DiRT identified a distinct set of numerous DEGs with improved reproducibility and reliable validation. KEGG pathway analysis revealed that DiRT-derived DEGs were functionally enriched in pathways related to methyl lucidone detoxification, including the proteasome, drug metabolism, and xenobiotic metabolism mediated by cytochrome P450 and other enzymes. Although DESeq2 and edgeR remain widely used standard methods, DiRT offers a novel complementary approach to enhance DEG characterization in RNA-Seq studies affected by experimental variability. Full article

The red mullet (Mullus barbatus, Linnaeus 1758) is a commercially vital demersal species in the Eastern Aegean Sea, yet it is subjected to high fishing pressure. This study assesses the population dynamics, growth, and exploitation status of M. barbatus based on 64 commercial trawl surveys conducted between 2022 and 2024 in the Lesvos–Ayvalik region. Length-frequency data identified eight age classes, with dominant cohorts at ages 3 (26.4%) and 5 (25%). The von Bertalanffy growth model estimated an asymptotic length (L∞) of 27.9 cm and growth coefficient (k = 0.21 year⁻¹), indicating a slow growth rate. The estimated fishing mortality (F = 0.74) exceeded natural mortality (M = 0.44), producing an exploitation rate (E = 0.63) that indicates overfishing. The length at 50% capture (LC₅₀ = 10.92 cm) was substantially below the optimal biomass length (Le = 16.6 cm), highlighting gear selectivity issues. Net benefit analysis revealed optimal fishing at 50–85 m depth and during December. These findings underscore the urgent need for improved management, including gear modifications, seasonal closures, and reduced effort, to restore sustainability and protect juvenile fish in the Eastern Aegean trawl fishery. Full article

Intra-specific variation in functional traits and their inter-relationships reflect how plants allocate resources, adapt, and evolve in response to environmental changes. This study investigated eight functional traits—leaf area (LA), specific leaf area (SLA), leaf dry matter content (LDMC), chlorophyll content (CHL), leaf nitrogen content (LNC), leaf phosphorus content (LPC), twig tissue density (TTD), and wood density (WD)—in Cunninghamia lanceolata plantations of three stand ages (15, 30, and 50 years), using a space-for-time substitution approach. We examined differences in trait values, intra-specific variation, and trait correlations across forest ages and diameter classes. The results showed that (1) Functional traits exhibited varying degrees of intra-specific variation, with LA having the highest coefficient of variation (21.66%) and LPC is lowest (9.31%). (2) Forest age had a stronger influence on trait variation than diameter class, with all traits differing significantly across ages, while only WD varied significantly among diameter classes. (3) PC1 (25.5%) and PC2 (19.4%) together explained approximately 44.9% of the total variation, with PC1 primarily reflecting functional trait changes driven by forest age. PCA results showed that LA and CHL tended to exhibit higher values in young forests, whereas SLA, LDMC, LPC, and LNC had relatively higher values in mature forests. This pattern suggests a shift in functional trait expression from resource acquisition to resource conservation strategies with increasing forest age. (4) Significant positive correlations between LNC and LPC, and negative correlations between SLA and LDMC, were observed in most groups, except in large-diameter trees at the over-mature stage. C. lanceolata adjusts trait combinations to enhance fitness across developmental stages. Juvenile trees adopt traits favoring efficient light and nutrient use to support rapid growth and competition. Middle-aged trees prioritize balanced water and nutrient use to maintain productivity and resist disturbances. Mature trees focus on sustained resource use and offspring protection to support ecosystem stability and regeneration. These findings reveal age-specific adaptive strategies and provide insights into the coordination and trade-offs among traits in response to environmental conditions. Full article

Phytophagous beetles, particularly those within the superfamilies Chrysomeloidea and Curculionoidea, constitute one of the most diverse and ecologically significant groups of insect herbivores. Within this group, the subfamily Bruchinae is especially notable for its close association with leguminous plant seeds. As most Bruchinae species do not feed during the adult stage, the timing and regulation of vitellogenesis remain unclear. Previous studies suggest that vitellogenesis may be triggered by volatile organic compounds emitted by host seeds, which promote juvenile hormone (JH) synthesis. This increase in JH is hypothesized to stimulate vitellogenesis, enhance female attractiveness, and ultimately facilitate fertilization and oviposition. To explore this hypothesis, we investigated the external cues regulating reproductive physiology in the capital breeder Zabrotes subfasciatus. Specifically, we examined the effects of host seeds and male presence on oviposition dynamics, fecundity, ovary activation, and the expression of vitellogenic genes (vg and vgR) throughout adult life. Our results show that females initiate vitellogenesis during the final phases of adult development, enabling oviposition to begin as early as the first day after emergence. Oviposition remains at basal levels throughout adult life unless both host seeds and males are present (p < 0.0001). This oviposition pattern is consistent with ovary activation dynamics, which reveal that vitellogenesis peaks early in the oviposition period and is prolonged by the presence of seeds and males (p < 0.05). Notably, vg and vgR gene expression respond differentially to these cues (p < 0.05). We integrate our findings with previous literature to propose a working model for the regulation of oviposition in the Bruchinae beetle Z. subfasciatus. Full article

The Japanese eel (Anguilla japonica) is a valuable aquaculture species in East Asia. However, sex differentiation under culture conditions is often male-biased, complicating the production of female broodstock. This study evaluated the effects of dietary soy isoflavone (SI) supplementation on growth performance, sex differentiation, and sex-specific gene expression in juvenile eels. Juvenile eels (initial mean weight: 1.25 ± 0.02 g) were randomly assigned to 15 tanks, each containing 100 g eels, in a 30-week feeding trial. The control diet (SI0) contained 75% jack mackerel meal. The graded levels (2.5, 5, 7.5, and 10%) of α-Starch were included at the expense of SI, referred to as SI0, SI2.5, SI5, SI7.5, and SI10 diets, respectively. Fish were hand-fed to satiation in triplicate groups of each diet, twice daily for 30 weeks. The SI2.5 and SI5 groups exhibited significantly enhanced final weights and specific growth rates compared to those in the control group (SI0). Histological analysis revealed the presence of differentiating gonads with oogonial proliferation and previtellogenesis in the SI-treated groups, particularly at the 2.5% and 5% inclusion levels. Additionally, the expression of key female-related genes (vasa, cyp19a1a, foxl2a, zp3, and zar1) was significantly upregulated in these groups. In contrast, relatively high SI levels (7.5% and 10%) did not provide any further benefits. These results suggest that low-dose supplementation of dietary SI can enhance feminization and promote growth in juvenile eels, thus offering a potential natural alternative to synthetic hormone treatment for broodstock development. Full article

Background: Altered microbiome structures are perceived as one of the factors triggering the rise of autoimmune diseases, including juvenile idiopathic arthritis (JIA). Despite the extensive research conducted on rheumatoid arthritis (RA), data on microbiome compositions in pediatric populations are scarce and inconclusive. Moreover, no study has addressed this issue in Polish patients with rheumatic diseases. Objectives: The aim of our study was to compare diversity in the fecal microbiome and concentration of the intestinal permeability marker zonulin in patients with new-onset JIA and healthy subjects. Materials and Methods: 15 treatment- naive patients with JIA and 15 age- and sex-matched controls qualified for the study. Analyses of fecal microbiome structure were performed using 16SrRNA gene sequencing, while concentration of serum zonulin was established using the ELISA method. Results: We found no statistically significant difference in alpha (p = 0.92) and beta diversity (p = 0.57)in the fecal microbiome between JIA patents and healthy children. Additionally, analyses of relative abundances of phyla, families, and genera identified no differences. Zonulin concentration did not vary (p = 0.88) between the study and control groups. Conclusions: There is no statistically significant difference in fecal microbiome structure between new-onset JIA patients and healthy controls. Full article

The Gabal Um Samra (GUS) compound intrusion in the Eastern Desert of Egypt consists of a co-magmatic series of syenogranite and alkali feldspar granite. Accessory minerals (e.g., zircon, monazite, allanite) are abundant. Geochemically, the GUS intrusion is a classic A-type granite. It is extensively fractionated, enriched in large ion lithophile elements and high field strength elements, and depleted in Ba, Sr, K, and Ti. Normalized rare earth element patterns are nearly flat, without any lanthanide tetrad anomalies, but with distinct negative Eu anomalies (Eu/Eu* = 0.14–0.22) due to feldspar fractionation. Paired Zr-Hf and Y-Ho element systematics indicate igneous rather than hydrothermal processes. The petrogenesis of the comparatively unaltered GUS intrusion offers an opportunity to refine the standard model for post-collisional felsic magmatism in the Neoproterozoic Arabian–Nubian Shield. It is explained by the partial melting of juvenile crust induced by lithospheric delamination, followed by extensive fractional crystallization. A quantitative mass-balance model shows that the granite varieties of the GUS intrusion plausibly represent liquids along a single liquid line of descent; but, if so, the more evolved, later pulses display anomalous enrichment in Rb, Nb, Ta, U, and REE. The most plausible source for this enrichment is the extraction of small-degree residual melts from earlier pulses and the mixing of the melts into the later pulses, an energetically favorable process we call “auto-assimilation”. A quantitative model shows that the residual liquid after 97.5% crystallization of the syenogranite can fit the major oxide and trace element data in the alkali feldspar granite if 0.07% by mass of this melt is added to the evolving system for each 1% crystal fractionation by mass. The GUS intrusion represents an example of moderate rare metal enrichment and concentration to sub-economic grade by auto-assimilation. Similar processes may affect intrusions that feature higher grade mineralization, but the evidence is often obscured by the extensive alteration of those deposits. Full article

This study investigated the cage size preferences of juvenile chinchillas using enclosures that allowed free choice between different dimensions. Three comparisons were tested: (1) small floor area (0.15 m²) vs. double floor area (0.30 m²) at constant height; (2) low height (0.4 m) vs. high height (1.0 m) at constant floor area (0.15 m²); and (3) small–low cage (0.15 m² × 0.4 m) vs. large–high cage (0.30 m² × 1.0 m). The juveniles consistently preferred the smaller or lower enclosures across all trials. In the floor area tests, chinchillas spent about 66–75% of their time in the small cage compartments (p < 0.001). In the height comparison, the low cage was preferred by 70% (p < 0.001). When both floor area and height were increased, the small–low cage was preferred by 79% (p < 0.001). Differences in preference were most evident during the daytime period. At night, however, cage utilization was more even. These results indicate that young chinchillas strongly prefer smaller, lower spaces. Based on these preference tests alone, simply providing larger cages (without other modifications) did not result in greater use by juvenile chinchillas. These unexpected results suggest that factors such as safety or familiarity drive juveniles to choose smaller enclosures. Further research is needed to clarify the motivation behind these preferences and to determine how best to incorporate them into improved welfare-oriented housing designs. Full article

The migratory locust (Locusta migratoria), is a destructive pest in agriculture and ecological conservation, characterized by its unique phase polyphenism (phase change). Parthenogenesis, defined as oviparous reproduction without fertilization, has been studied less extensively than fertilized reproduction, with particularly scarce research on parthenogenesis in migratory locust. This study investigates the relationship between parthenogenesis and the phase change in migratory locusts. Through comparative studies between two phases, we found that solitary locusts exhibit a higher parthenogenesis capacity compared to gregarious locusts, as evidenced by greater total oviposition quantity and higher hatching rates. However, parthenogenesis resulted in significantly lower hatching rates compared to sexually fertilized females, with distinct differences in oviposition dynamics and hatching patterns. Furthermore, we observed that gregarious locusts, when isolated after eclosion, exhibited increased parthenogenetic capacity, depending on their juvenile density. Together, this study provides insights into the understanding of insect parthenogenesis and lays basis for the potential underlying mechanism. Full article

To systematically elucidate the chronological patterns of embryonic development and morphological changes in the larval and juvenile stages of Silurus glanis, and provide fundamental biological insights into this species, in this study, fertilized eggs were obtained through artificial spawning induction technology. After removing adhesiveness from fertilized eggs using trypsin, a detailed developmental study was conducted. The study systematically analyzed the chronological sequence of embryonic development and the morphological change patterns of larval and juvenile fish. The results showed the following: The fertilized eggs of S. glanis are yellow, spherical, and sticky, and the stickiness allows eggs to attach to spawning substrates, enhancing hatching success. The egg diameter after water absorption was (2.88 ± 0.13) mm. The embryonic development took 47 h and 55 min, with a total accumulated temperature of 1245.56 h degrees Celsius, the developmental process includes seven stages and twenty-six periods, namely the zygophase stage, cleavage stage, blastula stage, gastrula stage, neurula stage, organogenesis stage, and hatching stage. At a temperature of (26.0 ± 0.9) °C, the hatched individuals went through the pre-yolk sac larval stage, late larval stage, juvenile fry stage, and juvenile stage. In the pre-yolk sac larval stage, otoliths appeared in the bilateral otic vesicles, a pair of barbel primordia emerged under the mandible, a short and thin straight intestine formed in the abdominal cavity, and the oral fissure first appeared. In the late larval stage, the fin rays were initially formed, the intestine became thicker and longer, the oral fissure, anus, and cloaca were formed, and the larvae could float and start feeding on exogenous food. In the juvenile fry stage, the differentiation of various organs was basically complete, the nostrils became larger, and both the anal fin and caudal fin had dark black markings. In the juvenile stage, the maxillary barbels elongated, the mucus layer thickened on the body and back, the abdomen is light white, and it had the external morphological characteristics of an adult fish. By measuring and calculating the total length, body length, body height, and head length of S. glanis larvae and juveniles (0–40 days), the results showed that the growth characteristics conformed to the following fish growth formula: TL = 0.0141x² + 0.8096x + 8.2421 (R² = 0.9916), where x denotes days after hatching. This study has preliminarily mastered the chronological patterns of the embryonic development, growth, and formation of the morphological characteristics in larval and juvenile S. glanis, providing scientific data and laying a theoretical foundation for the division of early developmental stages, reproduction, hatching, and fry cultivation. Full article

Predation plays a key organizational role in structuring plankton communities. However, predator diversity can lead to emergent effects in which the outcomes of predator–prey interactions are modified. The response of the plankton community to three different predator regimes at natural densities was investigated over a 10-day mesocosm experiment in a temperate, temporarily open/closed estuary in South Africa. The regimes included: (1) predation by the mysid, Mesopodopsis wooldridgei; (2) predation by larval Rhabdosargus holubi and (3) a combination of the two predators. M. wooldridgei are primarily copepod feeders, and juvenile R. holubi consume a broader diet including zooplankton, algae and invertebrate fauna. In the absence of predators, zooplankton grazing contributed to a significant decline in the phytoplankton size structure and total chlorophyll-a (Chl-a) concentration. The presence of the predators contributed to a decline in the total zooplankton abundances and biomass which dampened the grazing impact of the zooplankton on the total Chl-a, consistent with the expectations of a trophic cascade. There were no significant differences in the size structure of the phytoplankton community, total Chl-a concentration and the total zooplankton abundances and biomass between the different predator treatments, suggesting that the increase in predator diversity did not contribute to increased prey risk. These findings highlight both the direct and indirect ecological impacts of predators on plankton dynamics. Full article

Parkinson’s disease (PD) is one of the most common neurodegenerative disorders among the elderly. The exact etiology of sporadic PD is still unknown; however, there is general consensus that the accumulation and aggregation of α-synuclein (α-syn) are among the prominent pathological features. The precise function of α-syn in the healthy human brain is not agreed upon, although it has been reported to play a role in vesicular trafficking and neurotransmitter release. Dutch Juvenile-1 (DJ-1) is a multifunctional protein involved in regulating an array of mechanisms, including oxidative stress, ferroptosis, mitochondrial and dopamine homeostasis. Loss-of-function of DJ-1 was reported to cause familial PD, and oxidative inactivation of DJ-1 has been observed in sporadic cases, suggesting that both genetic and post-translational events converge on common disease pathways. This review proposes that loss of DJ-1 function may elevate intracellular α-syn levels, leading to their aggregation and consequent neurotoxicity. Reports suggest that DJ-1 can inhibit α-syn aggregation, facilitate α-syn clearance via chaperone-mediated autophagy, and act as a deglycase or glyoxalase to neutralize glycated α-syn species. Clinical studies have also reported altered DJ-1 oxidation states in PD patient samples, supporting its potential as a biomarker. By bridging familial and sporadic PD mechanisms, DJ-1 emerges as a compelling therapeutic target with the potential to mitigate α-syn–mediated neurodegeneration across both forms. However, further research is required to fully establish its clinical relevance and translational potential. Full article

Diadema setosum is an economically important species in tropical and subtropical waters. To determine the optimal salinity for D. setosum aquaculture, we examined six salinity levels (20, 24, 28, 32, 36, and 40) during winter and spring, assessing their effects on survival, growth, and eco-physiological parameters of juvenile D. setosum. Results showed that (1) in winter, the survival rate of juvenile D. setosum was highest at salinities of 28–36, with 100% survival at salinities of 32–36. During spring, all salinity groups reached 100% survival. (2) Juveniles exhibited optimal growth performances at salinities of 32–36 across all seasons, and negative growth occurred at lower salinities (20–24) during winter. (3) The juveniles exhibited higher oxygen consumption rate and ammonium excretion rate with an atomic O:N ratio > 25 at salinities of 32–36, indicating that carbon-based substrates were the primary catabolic substrate. Under salinity stress (<24 or >40), the O:N ratio declined significantly, reflecting that proteins were the main metabolic substrate. (4) Fecal excretion was higher in winter than in spring, possibly due to size and digestive efficiency differences. Studies confirmed that salinity and temperature exert significantly combined effects on D. setosum, with an optimal salinity range of 32–36. This work provides valuable insights for the breeding and aquaculture of this species. Full article

Mannan oligosaccharide (MOS), a prebiotic derived from yeast cell walls, has been shown to enhance growth performance and health status in various aquatic species. As an exogenous antigen adjuvant, MOS modulates T-cell-mediated immune responses, thereby improving immune function and suppressing excessive inflammatory reactions. This study aimed to evaluate the effects of dietary MOS supplementation on growth performance, serum biochemical parameters, muscle composition, digestive enzyme activity, antioxidant and immune status, and the mTOR signaling pathway in juvenile GIFT tilapia (Oreochromis niloticus). Juveniles (initial body weight: 16.17 ± 1.32 g) were randomly assigned to six treatment groups (three replicate tanks per group) and fed diets supplemented with MOS at 0, 0.2%, 0.4%, 0.6%, 0.8%, and 1% (equivalent to 0, 2, 4, 6, 8, and 10 g/kg of diet, respectively) for 60 days. Compared with the control group, fish fed MOS-supplemented diets exhibited significantly higher (p < 0.05) weight gain rates, specific growth rates, and protein efficiency ratios, along with a significantly lower (p < 0.05) feed conversion ratio. Serum albumin, high-density lipoprotein, and lysozyme levels were significantly increased (p < 0.05), whereas triglycerides, low-density lipoprotein, aspartate aminotransferase, and alanine aminotransferase levels were significantly decreased (p < 0.05). In the liver, head kidney, and spleen, the expression of pro-inflammatory genes (tumor necrosis factor α, interleukin 1β, interleukin 6, interleukin 8, and interferon γ) was significantly downregulated (p < 0.05), while the expression of antioxidant and protective genes (superoxide dismutase, catalase, glutathione peroxidase, glutathione S-transferase, nuclear factor erythroid 2-related factor 2, lysozyme, alkaline phosphatase, interleukin-10, transforming growth factor β, and heat shock protein 70) as well as mTOR signaling pathway-related genes (mammalian target of rapamycin, akt protein kinase B, phosphatidylinositol 3 kinase, and ribosomal protein S6 kinase polypeptide 1) was significantly upregulated (p < 0.05). Overall, MOS positively affects tilapia’s growth, health, and immunity, with 0.60% identified as the optimal dietary level based on growth performance. Full article