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18 pages, 2215 KB  
Article
Gut Dysbiosis and Plasma Trimethylamine Oxide Are Associated with Subclinical Coronary Atherosclerosis in Obese Patients with Metabolic Dysfunction-Associated Steatotic Liver Disease
by Kittiya Islam, Pattida Kongsomboonchoke, Maneerat Chayanupatkul, Monravee Tumkosit, Pairoj Chattranukulchai, Pinidphon Prombutara and Pisit Tangkijvanich
Nutrients 2025, 17(17), 2759; https://doi.org/10.3390/nu17172759 - 26 Aug 2025
Viewed by 382
Abstract
Background/Objectives: Gut microbiota has been implicated in the pathogenesis of metabolic dysfunction-associated steatotic liver disease (MASLD) and cardiovascular disease (CVD). This study aimed to identify associations between gut dysbiosis and MASLD, regarding body mass index (BMI) and subclinical coronary atherosclerosis (SCA). Methods [...] Read more.
Background/Objectives: Gut microbiota has been implicated in the pathogenesis of metabolic dysfunction-associated steatotic liver disease (MASLD) and cardiovascular disease (CVD). This study aimed to identify associations between gut dysbiosis and MASLD, regarding body mass index (BMI) and subclinical coronary atherosclerosis (SCA). Methods: We conducted a cross-sectional study of 202 patients with MASLD who had no previous history of CVD. The severity of MASLD was evaluated using a magnetic resonance imaging-based method, and SCA was measured by assessing coronary artery calcification (CAC). Gut microbiota was assessed in fecal specimens using sequencing targeting the V4 region of the 16S rRNA gene. Results: Our results demonstrated that gut microbial profiles between low- and high-BMI groups (<30 vs. ≥30 kg/m2) differed significantly in beta-diversity, but not in alpha-diversity indices. At the genus level, we identified Megamonas, Sutterella, Catenibacterium, and Odoribacter, enriched in the high BMI group. Compared to the low CAC group (<100 AU), MASLD patients with high CAC scores (≥100 AU) exhibited enrichment in Ruminococcus gnavus, Bacteroides, and Lachnoclostridium, along with depletion of several short-chain fatty acid (SCFA)-producing bacteria, such as Faecalibacterium. Multivariate analysis demonstrated that older age, the presence of diabetes, high BMI, fibrosis stage F3-F4, and high plasma trimethylamine oxide (TMAO) levels were independently associated with a high CAC score in patients with MASLD. Conclusions: These data indicated that gut dysbiosis and related metabolites, in association with advanced liver disease, were potential contributors to the progression of SCA in obese patients with MASLD. Full article
(This article belongs to the Section Prebiotics and Probiotics)
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18 pages, 5350 KB  
Article
Mössbauer Research and Magnetic Properties of Dispersed Microspheres from High-Calcium Fly Ash
by Elena V. Fomenko, Yuriy V. Knyazev, Galina V. Akimochkina, Sergey V. Semenov, Vladimir V. Yumashev, Leonid A. Solovyov, Natalia N. Anshits, Oleg A. Bayukov and Alexander G. Anshits
Magnetochemistry 2025, 11(9), 72; https://doi.org/10.3390/magnetochemistry11090072 - 23 Aug 2025
Viewed by 203
Abstract
High-calcium fly ash (HCFA), produced from the lignite combustion, has emerged as a global concern due to its fine particle size and adverse environmental impacts. This study presents the characteristics of dispersed microspheres from HCFA obtained using modern techniques, such as XRD, SEM-EDS, [...] Read more.
High-calcium fly ash (HCFA), produced from the lignite combustion, has emerged as a global concern due to its fine particle size and adverse environmental impacts. This study presents the characteristics of dispersed microspheres from HCFA obtained using modern techniques, such as XRD, SEM-EDS, 57Fe Mössbauer spectroscopy, DSC-TG, particle size analysis, and magnetic measurements. It is found that an increase in microsphere size is likely due to the growth of the silicate glass-like phase, while the magnetic crystalline phase content remains stable. According to the 57Fe Mössbauer spectroscopy, there are two substituted Ca-based ferrites—CaFe2O4 and Ca2Fe2O5 with a quite different magnetic behavior. Besides, the magnetic ordering temperature of the brownmillerite (Ca2Fe2O5) phase increases with the average diameter of the microspheres. FORC analysis reveals enhanced magnetic interactions as microsphere size increases, indicating an elevation in the concentration of magnetic microparticles, primarily on the microsphere surface, as supported by electron microscopy data. The discovered the magnetic crystallographic phases distribution on the microsphere’s surface claims the accessibility for further enrichment of the magnetically active particles and the possible application of fly ashes as a cheap source for magnetic materials synthesis. Full article
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24 pages, 3567 KB  
Article
Evaluation of Biocontrol Measures to Reduce Bacterial Load and Healthcare-Associated Infections
by Anna Vareschi, Salvatore Calogero Gaglio, Kevin Dervishi, Arianna Minoia, Giorgia Zanella, Lorenzo Lucchi, Elena Serena, Concepcion Jimenez-Lopez, Francesca Cristiana Piritore, Mirko Meneghel, Donato Zipeto, Diana Madalina Gaboreanu, Ilda Czobor Barbu, Mariana Carmen Chifiriuc, Luca Piubello Orsini, Stefano Landi, Chiara Leardini, Massimiliano Perduca, Luca Dalle Carbonare and Maria Teresa Valenti
Microorganisms 2025, 13(8), 1923; https://doi.org/10.3390/microorganisms13081923 - 18 Aug 2025
Viewed by 576
Abstract
Hospital-acquired infections (HAIs) remain a major clinical and economic burden, with pathogens such as Escherichia coli contributing to high rates of morbidity and mortality. Traditional manual disinfection methods are often insufficient, particularly in high-risk hospital environments. In this study, we investigated innovative strategies [...] Read more.
Hospital-acquired infections (HAIs) remain a major clinical and economic burden, with pathogens such as Escherichia coli contributing to high rates of morbidity and mortality. Traditional manual disinfection methods are often insufficient, particularly in high-risk hospital environments. In this study, we investigated innovative strategies to enhance surface decontamination and reduce infection risk. First, we assessed the efficacy of the SMEG BPW1260 bedpan washer-disinfector, a thermal disinfection system for human waste containers. Our results demonstrated a reduction in Clostridium difficile and Escherichia coli contamination by >99.9% (>3 log reduction), as measured by colony-forming units (CFU) before and after treatment. Molecular techniques, including spectrophotometry, cell counting, and quantitative PCR (qPCR) for DNA quantification, confirmed reduction in bacterial contamination. Specifically, Clostridium difficile showed a reduction of approximately 89% in both optical density (OD) and cell count (cells/mL). In the case of Escherichia coli, a reduction of around 82% in OD was observed, with an even more pronounced decrease in cell count, reaching approximately 99.3%. For both bacteria, DNA quantification by qPCR was below detectable limits. Furthermore, we optimized the energy efficiency of the disinfection cycle, achieving a 45% reduction in power consumption compared to standard protocols without compromising antimicrobial efficacy. Secondly, we developed a sustainable cleaning solution based on methyl ester sulfonate surfactants derived from waste cooking oil. The detergent’s antibacterial activity was tested on contaminated surfaces and further enhanced through the incorporation of nanoassemblies composed of silver, electrostatically bound either to biomimetic magnetic nanoparticles or to conventional magnetic nanoparticles. Washing with the detergent alone effectively eliminated detectable contamination, while the addition of nanoparticles inhibited bacterial regrowth. Antimicrobial testing against E. coli revealed that the nanoparticle-enriched formulations reduced the average MIC values by approximately 50%, with MIC50 values around 0.03–0.06 mg/mL and MIC90 values between 0.06 and 0.12 mg/mL, indicating improved inhibitory efficacy. Finally, recognizing the infection risks associated with intra-hospital transport, we tested the SAFE-HUG Wheelchair Cover, a disposable non-woven barrier designed to reduce patient exposure to contaminated wheelchair surfaces. Use of the cover resulted in a 3.3 log reduction in surface contamination, based on viable cell counts. Optical density and bacterial DNA were undetectable in all covered samples at both 1 and 24 h, confirming the strong barrier effect. Together, these approaches—thermal no-touch disinfection, eco-friendly detergent boosted with nanoparticles, and protective transport barriers—respond to the urgent need for effective, sustainable infection control methods in healthcare settings. Our findings demonstrate the potential of these systems to counteract microbial contamination while minimizing environmental impact, offering promising solutions for the future of infection prevention in healthcare settings. Full article
(This article belongs to the Special Issue Pathogen Infection and Public Health)
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20 pages, 3539 KB  
Article
Advanced Magnetic Imprinted Polymers Integrated with In Situ Ionization Mass Spectrometry for High-Throughput Pesticide Screening and Detection in Food Matrices
by Xuan Li, Feng-Lan Lv, Jun-Yun Wang, Yi-Chen Lu, Yun Li, Pan-Pan Li, Min Cao, Ya-Ru Ni and Xiao-Hui Xiong
Foods 2025, 14(16), 2786; https://doi.org/10.3390/foods14162786 - 11 Aug 2025
Viewed by 374
Abstract
This research introduces magnetic molecularly imprinted polymers (MMIPs) as a novel tool for the efficient extraction and detection of pesticide residues in food products. The MMIPs exhibit a notable adsorption capacity ranging from 15.70 to 23.57 mg g−1, showcasing their efficacy [...] Read more.
This research introduces magnetic molecularly imprinted polymers (MMIPs) as a novel tool for the efficient extraction and detection of pesticide residues in food products. The MMIPs exhibit a notable adsorption capacity ranging from 15.70 to 23.57 mg g−1, showcasing their efficacy in preconcentrating multiple pesticides. By leveraging Low-Temperature Plasma Mass Spectrometry (LTP-MS) in conjunction with MMIP-based sample pretreatment, the study achieves rapid screening of 108 pesticides in agricultural products, boasting a detection sensitivity of 86.9%. The MMIPs demonstrate exceptional selectivity, enabling swift separation in an external magnetic field, thereby reducing reliance on chemical reagents and facilitating multiple reuses. Rigorous evaluation of the MMIPs’ binding properties, magnetic separation efficiency, and reusability underscores their potential for class-selective enrichment of pesticide residues. The MMIPs were meticulously characterized using a comprehensive array of analytical techniques, including FT-IR spectrometry, SEM, TEM, VSM, and UV–vis spectrophotometry. Remarkably, the MMIPs’ performance in pesticide extraction yielded promising results, with successful qualitative detection of 78 out of 87 identified pesticides in cucumber samples, 71 out of 85 identified pesticides in tomato samples, 55 out of 64 identified pesticides in cabbage samples, and 42 out of 48 identified pesticides in leek samples, achieving recovery rates within the range of 60.12% to 119.84% for 50.91% of the identified pesticides. The screening detection limit (SDL) for the 86 pesticides in the MMMIP-LTP-MS method was set according to the corresponding maximum residue limit (MRL) in the National Food Safety Standard of China (GB 2763-2021). The quantification limits of MMMIPs-LC-TQ-MS ranged from 0.000043 to 5.52 µg g−1, with recoveries between 60.12% and 119.84%. These findings underscore the significant impact of MMIP-based sample preparation in enhancing the precision and efficiency of high-throughput determination of pesticide residues in food products. Full article
(This article belongs to the Section Food Analytical Methods)
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20 pages, 9668 KB  
Article
Distribution Patterns and Main Controlling Factors of Helium in the Ordos Basin
by Dahai Wang, Lichi Ma, Tao Zhang, Dongya Zhu, Xiaohui Jin, Guojun Wang and Jun Peng
Appl. Sci. 2025, 15(16), 8806; https://doi.org/10.3390/app15168806 - 9 Aug 2025
Viewed by 436
Abstract
This study presents the first integrated, basin-scale analysis of helium distribution and its geological controls within the Ordos Basin, one of China’s most prospective cratonic gas provinces. Through comprehensive sampling and experimental analysis of the helium content in natural gas, combined with high-resolution [...] Read more.
This study presents the first integrated, basin-scale analysis of helium distribution and its geological controls within the Ordos Basin, one of China’s most prospective cratonic gas provinces. Through comprehensive sampling and experimental analysis of the helium content in natural gas, combined with high-resolution gravity and magnetic data processed using the normalized vertical derivative of the total horizontal derivative (NVDR-THDR) method, we reveal significant spatial heterogeneity in helium enrichment. The results show that helium concentrations are generally higher along the basin margins and structurally complex zones, while central areas are relatively depleted. Helium primarily originates from the radioactive decay of uranium (U) and thorium (Th) within metamorphic and magmatic basement rocks. Fault systems act as efficient vertical migration pathways, enabling deep-sourced helium to accumulate in structurally and stratigraphically favorable traps. This study proposes a new enrichment mode, “basement-sourced helium generation, fault-mediated migration, and caprock-controlled preservation”, which highlights the synergistic roles of basement lithology, deep-seated faults, and sealing capacity in controlling helium distribution. This model is supported by the observed alignment of high helium concentrations with zones of strong basement magnetism and major fault intersections. These findings advance our understanding of helium accumulation mechanisms in stable cratonic settings and provide a predictive framework for helium exploration in similar geological contexts worldwide. Full article
(This article belongs to the Topic Exploitation and Underground Storage of Oil and Gas)
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13 pages, 3474 KB  
Article
Energy Dispersion Relationship and Hofstadter Butterfly of Triangle and Rectangular Moiré Patterns in Tight Binding States
by Ziheng Li, Jiangwei Liu, Xiaoxiao Zheng, Yu Sun, Nan Han, Liang Wang, Muyang Li, Lei Han, Safia Khan, S. Hassan M. Jafri, Klaus Leifer, Yafei Ning and Hu Li
Physics 2025, 7(3), 34; https://doi.org/10.3390/physics7030034 - 5 Aug 2025
Viewed by 327
Abstract
Herein, the energy dispersion relationship and the density of states of triangular and rectangular moiré patterns are investigated using a tight binding model. Their characteristics of Hofstadter butterflies under different magnetic fields are also examined. The results indicate that, by analyzing different moiré [...] Read more.
Herein, the energy dispersion relationship and the density of states of triangular and rectangular moiré patterns are investigated using a tight binding model. Their characteristics of Hofstadter butterflies under different magnetic fields are also examined. The results indicate that, by analyzing different moiré superlattices, Hofstadter butterflies arising from different moiré pattern structures are obtained, exhibiting considerable fractal characteristics and self-similarities. Moreover, it is also observed that under an alternating magnetic field, the redistribution of electronic states leads to a significant change in the density of states curve, and the Van Hove peak changes with the increase in magnetic field intensity. This study enriches the understanding of the electronic behavior of moiré systems, but it also provides multiple potential application directions for future technological development. Full article
(This article belongs to the Section Statistical Physics and Nonlinear Phenomena)
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24 pages, 6356 KB  
Article
Tectonic Rift-Related Manganese Mineralization System and Its Geophysical Signature in the Nanpanjiang Basin
by Daman Cui, Zhifang Zhao, Wenlong Liu, Haiying Yang, Yun Liu, Jianliang Liu and Baowen Shi
Remote Sens. 2025, 17(15), 2702; https://doi.org/10.3390/rs17152702 - 4 Aug 2025
Viewed by 478
Abstract
The southeastern Yunnan region in the southwestern Nanpanjiang Basin is one of the most important manganese enrichment zones in China. Manganese mineralization is mainly confined to marine mud–sand–carbonate interbeds of the Middle Triassic Ladinian Falang Formation (T2f), which contains several [...] Read more.
The southeastern Yunnan region in the southwestern Nanpanjiang Basin is one of the most important manganese enrichment zones in China. Manganese mineralization is mainly confined to marine mud–sand–carbonate interbeds of the Middle Triassic Ladinian Falang Formation (T2f), which contains several medium to large deposits such as Dounan, Baixian, and Yanzijiao. However, the geological processes that control manganese mineralization in this region remain insufficiently understood. Understanding the tectonic evolution of the basin is therefore essential to unravel the mechanisms of Middle Triassic metallogenesis. This study investigates how rift-related tectonic activity influences manganese ore formation. This study integrates global gravity and magnetic field models (WGM2012, EMAG2v3), audio-frequency magnetotelluric (AMT) profiles, and regional geological data to investigate ore-controlling structures. A distinct gravity low–magnetic high belt is delineated along the basin axis, indicating lithospheric thinning and enhanced mantle-derived heat flow. Structural interpretation reveals a rift system with a checkerboard pattern formed by intersecting NE-trending major faults and NW-trending secondary faults. Four hydrothermal plume centers are identified at these fault intersections. AMT profiles show that manganese ore bodies correspond to stable low-resistivity zones, suggesting fluid-rich, hydrothermally altered horizons. These findings demonstrate a strong spatial coupling between hydrothermal activity and mineralization. This study provides the first identification of the internal rift architecture within the Nanpanjiang Basin. The basin-scale rift–graben system exerts first-order control on sedimentation and manganese metallogenesis, supporting a trinity model of tectonic control, hydrothermal fluid transport, and sedimentary enrichment. These insights not only improve our understanding of rift-related manganese formation in southeastern Yunnan but also offer a methodological framework applicable to similar rift basins worldwide. Full article
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14 pages, 1462 KB  
Article
Theoretical Investigation of the Material Usage During On-Bead Enrichment of Post-Translationally Modified Peptides in Suspension Systems
by Kai Liu, Yuanyu Huang, Thomas Huang, Pengyuan Yang, Jilie Kong, Huali Shen and Quanqing Zhang
Molecules 2025, 30(15), 3245; https://doi.org/10.3390/molecules30153245 - 2 Aug 2025
Viewed by 345
Abstract
Over the past decade, the number and diversity of identified protein post-translational modifications (PTMs) have grown significantly. However, most PTMs occur at relatively low abundance, making selective enrichment of modified peptides essential. To address this, we developed a thermodynamic model describing the free [...] Read more.
Over the past decade, the number and diversity of identified protein post-translational modifications (PTMs) have grown significantly. However, most PTMs occur at relatively low abundance, making selective enrichment of modified peptides essential. To address this, we developed a thermodynamic model describing the free beads enrichment in suspension enrichment process and derived a theoretical relationship between material dosage and analyte recovery. The model predicts a non-linear trend, with enrichment efficiency increasing up to an optimal dosage and declining thereafter—a pattern confirmed by experimental data. We validated the model using centrifugation-based enrichment for glycosylated peptides and magnetic-based enrichment for phosphorylated peptides. In both cases, the results aligned with theoretical predictions. Additionally, the optimal dosage varied among peptides with the same modification type, highlighting the importance of tailoring enrichment strategies. This study provides a solid theoretical and experimental basis for optimizing PTMs enrichment and advancing more sensitive, accurate, and efficient mass spectrometry-based proteomic workflows. Full article
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21 pages, 6921 KB  
Article
Transcriptomic Analysis Identifies Oxidative Stress-Related Hub Genes and Key Pathways in Sperm Maturation
by Ali Shakeri Abroudi, Hossein Azizi, Vyan A. Qadir, Melika Djamali, Marwa Fadhil Alsaffar and Thomas Skutella
Antioxidants 2025, 14(8), 936; https://doi.org/10.3390/antiox14080936 - 30 Jul 2025
Viewed by 738
Abstract
Background: Oxidative stress is a critical factor contributing to male infertility, impairing spermatogonial stem cells (SSCs) and disrupting normal spermatogenesis. This study aimed to isolate and characterize human SSCs and to investigate oxidative stress-related gene expression, protein interaction networks, and developmental trajectories involved [...] Read more.
Background: Oxidative stress is a critical factor contributing to male infertility, impairing spermatogonial stem cells (SSCs) and disrupting normal spermatogenesis. This study aimed to isolate and characterize human SSCs and to investigate oxidative stress-related gene expression, protein interaction networks, and developmental trajectories involved in SSC function. Methods: SSCs were enriched from human orchiectomy samples using CD49f-based magnetic-activated cell sorting (MACS) and laminin-binding matrix selection. Enriched cultures were assessed through morphological criteria and immunocytochemistry using VASA and SSEA4. Transcriptomic profiling was performed using microarray and single-cell RNA sequencing (scRNA-seq) to identify oxidative stress-related genes. Bioinformatic analyses included STRING-based protein–protein interaction (PPI) networks, FunRich enrichment, weighted gene co-expression network analysis (WGCNA), and predictive modeling using machine learning algorithms. Results: The enriched SSC populations displayed characteristic morphology, positive germline marker expression, and minimal fibroblast contamination. Microarray analysis revealed six significantly upregulated oxidative stress-related genes in SSCs—including CYB5R3 and NDUFA10—and three downregulated genes, such as TXN and SQLE, compared to fibroblasts. PPI and functional enrichment analyses highlighted tightly clustered gene networks involved in mitochondrial function, redox balance, and spermatogenesis. scRNA-seq data further confirmed stage-specific expression of antioxidant genes during spermatogenic differentiation, particularly in late germ cell stages. Among the machine learning models tested, logistic regression demonstrated the highest predictive accuracy for antioxidant gene expression, with an area under the curve (AUC) of 0.741. Protein oxidation was implicated as a major mechanism of oxidative damage, affecting sperm motility, metabolism, and acrosome integrity. Conclusion: This study identifies key oxidative stress-related genes and pathways in human SSCs that may regulate spermatogenesis and impact sperm function. These findings offer potential targets for future functional validation and therapeutic interventions, including antioxidant-based strategies to improve male fertility outcomes. Full article
(This article belongs to the Special Issue Oxidative Stress and Male Reproductive Health)
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20 pages, 6964 KB  
Article
Mineralogical Analysis of Factors Affecting the Grade of High-Gradient Magnetic Separation Concentrates and Experimental Study on TiO2 Enrichment Using ARC
by Yifei Liu, Zhenqiang Liu, Yuhua Wang, Yuxin Zhang and Dongfang Lu
Minerals 2025, 15(8), 799; https://doi.org/10.3390/min15080799 - 30 Jul 2025
Viewed by 342
Abstract
High-gradient magnetic separation is a key step in the pre-concentration of ilmenite before flotation, particularly in the gravity separation process. However, as the amount of weakly magnetic gangue minerals increases, the grade of the coarse concentrate from high-gradient magnetic separation decreases. This paper [...] Read more.
High-gradient magnetic separation is a key step in the pre-concentration of ilmenite before flotation, particularly in the gravity separation process. However, as the amount of weakly magnetic gangue minerals increases, the grade of the coarse concentrate from high-gradient magnetic separation decreases. This paper investigates the mineralogical factors affecting the enrichment efficiency of high-gradient magnetic separation. Additionally, a newly developed stirred fluidized bed device, an agitated reflux classifier (ARC), was successfully applied to remove weakly magnetic gangue minerals that are difficult to separate by high-gradient magnetic separation (HGMS). For low-grade ilmenite with a feed grade of 3.97%, a combined process of magnetic separation and gravity separation was employed, achieving a concentrate with a grade of 16.50% and a recovery rate of 54.11%. This concentrate meets the requirements for flotation feed. This study provides a new approach for the beneficiation of low-grade ilmenite. Full article
(This article belongs to the Section Mineral Processing and Extractive Metallurgy)
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20 pages, 2822 KB  
Article
Nanoparticle Formulation Generated from DDGS and Its Anthraquinone Synthesis Elicitation in Rubia tinctorum Hairy Roots
by Gonzalo Galaburri, Yazmín R. Kalapuj, María Perassolo, Julián Rodríguez Talou, Patricio G. Márquez, Romina J. Glisoni, Antonia Infantes-Molina, Enrique Rodríguez-Castellón and Juan M. Lázaro-Martínez
Polymers 2025, 17(15), 2021; https://doi.org/10.3390/polym17152021 - 24 Jul 2025
Viewed by 569
Abstract
A nanoparticle formulation was generated from distiller dried grains with solubles (DDGS), and its effect on the production of anthraquinones (AQs) was evaluated on Rubia tinctorum hairy roots. The DDGS material was washed with water and ethyl acetate to remove mainly the soluble [...] Read more.
A nanoparticle formulation was generated from distiller dried grains with solubles (DDGS), and its effect on the production of anthraquinones (AQs) was evaluated on Rubia tinctorum hairy roots. The DDGS material was washed with water and ethyl acetate to remove mainly the soluble organic/inorganic molecules and reduce the fat content, respectively, followed by an alkaline treatment to remove the polysaccharides. The resulting alkaline solutions were then lyophilized and redispersed in deionized water to generate a monodispersed nanoparticulate formulation (DDGS-NP) with a hydrodynamic diameter and zeta potential of 227 ± 42 nm and −53 ± 7 mV, respectively. The formulation demonstrated good colloidal stability over time, and sterilized DDGS-NPs maintained comparable physicochemical properties. The nanoparticles were enriched in protein fractions, unsaturated fatty acids, and orthophosphate anion components from DDGS, as determined by solid-state Nuclear Magnetic Resonance (NMR), X-ray photoelectron spectroscopy (XPS), organic elemental analysis (OEA), and inductively coupled plasma optical emission spectrometry (ICP-OES) techniques. The DDGS-NPs were tested at different concentrations on Rubia tinctorum hairy roots, in comparison to or in combination with methyl jasmonate (MeJ), for their capacity to induce the production of AQs. All DDGS-NP concentrations increased the production of specific AQs to 7.7 (100 mg L−1), 7.8 (200 mg L−1), and 9.3 µmol/gFW (500 mg L−1), with an extracellular AQ accumulation of 18 µM for the highest DDGS-NP concentration, in comparison with the control hairy roots (~2 µM AQ). The plant growth was not affected at any of the tested nanoparticle concentrations. Interestingly, the combination of DDGS-NPs and MeJ resulted in the highest extracellular AQ accumulation in R. tinctorum root cultures. Full article
(This article belongs to the Section Polymer Composites and Nanocomposites)
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12 pages, 1599 KB  
Article
CRISPR/Cas12a-Chemiluminescence Cascaded Bioassay for Amplification-Free and Sensitive Detection of Nucleic Acids
by Xiaotian Guan, Peizheng Wang, Yi Wang and Shuqing Sun
Biosensors 2025, 15(8), 479; https://doi.org/10.3390/bios15080479 - 24 Jul 2025
Viewed by 504
Abstract
The CRISPR/Cas system has attracted increasing attention in accurate nucleic acid detection. Herein, we reported a CRISPR/Cas12a-chemiluminescence cascaded bioassay (CCCB) for the amplification-free and sensitive detection of human papillomavirus type 16 (HPV-16) and parvovirus B19 (PB-19). A magnetic bead (MB)-linking single-stranded DNA (LssDNA)-alkaline [...] Read more.
The CRISPR/Cas system has attracted increasing attention in accurate nucleic acid detection. Herein, we reported a CRISPR/Cas12a-chemiluminescence cascaded bioassay (CCCB) for the amplification-free and sensitive detection of human papillomavirus type 16 (HPV-16) and parvovirus B19 (PB-19). A magnetic bead (MB)-linking single-stranded DNA (LssDNA)-alkaline phosphatase (ALP) complex was constructed as the core component of the bioassay. During the detection process, the single-stranded target DNA was captured and enriched by LssDNA and then activated the trans-cleavage activity of Cas12a. Due to the Cas12a-mediated cleavage of LssDNA, ALP was released from the MB, subsequently catalyzing the substrate to generate a chemiluminescence (CL) signal. Given the cascade combination of CRISPR/Cas12a with the CL technique, the limits of detection for HPV-16 and PB-19 DNA were determined as 0.14 pM and 0.37 pM, respectively, and the whole detection could be completed within 60 min. The practicality and reliability of the platform were validated through target-spiked clinical specimens, and the recovery rate was 93.4–103.5%. This dual-amplification strategy—operating without target pre-amplification—featured high specificity, low contamination risk, facile preparation, and robust stability. It provides a novel approach for sensitive nucleic acid detection, with the potential for rapid extension to the diagnosis of various infectious diseases. Full article
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25 pages, 3575 KB  
Article
Assessment of Brain Morphological Abnormalities and Neurodevelopmental Risk Copy Number Variants in Individuals from the UK Biobank
by Sara Azidane, Sandra Eizaguerri, Xavier Gallego, Lynn Durham, Emre Guney and Laura Pérez-Cano
Int. J. Mol. Sci. 2025, 26(15), 7062; https://doi.org/10.3390/ijms26157062 - 22 Jul 2025
Viewed by 482
Abstract
Brain morphological abnormalities are common in patients with neurodevelopmental disorders (NDDs) and other neuropsychiatric disorders, often reflecting abnormal brain development and function. Genetic studies have found common genetic factors in NDDs and other neuropsychiatric disorders, although the etiology of brain structural changes in [...] Read more.
Brain morphological abnormalities are common in patients with neurodevelopmental disorders (NDDs) and other neuropsychiatric disorders, often reflecting abnormal brain development and function. Genetic studies have found common genetic factors in NDDs and other neuropsychiatric disorders, although the etiology of brain structural changes in these disorders remains poorly understood. In this study, we analyzed magnetic resonance imaging (MRI) and genetic data from more than 30K individuals from the UK Biobank to evaluate whether NDD-risk copy number variants (CNVs) are also associated with neuroanatomical changes in both patients and neurotypical individuals. We found that the size differences in brain regions such as corpus callosum and cerebellum were associated with the deletions of specific areas of the human genome, and that specific neuroanatomical changes confer a risk of neuropsychiatric disorders. Furthermore, we observed that gene sets located in these genomic regions were enriched for pathways crucial for brain development and for phenotypes commonly observed in patients with NDDs. These findings highlight the link between CNVs, brain structure abnormalities, and the shared pathophysiology of NDDs and other neuropsychiatric disorders, providing new insights into the underlying mechanisms of these disorders and the identification of potential biomarkers for better diagnosis. Full article
(This article belongs to the Special Issue Molecular Investigations in Neurodevelopmental Disorders)
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20 pages, 16432 KB  
Article
Application of Clustering Methods in Multivariate Data-Based Prospecting Prediction
by Xiaopeng Chang, Minghua Zhang, Liang Chen, Sheng Zhang, Wei Ren and Xiang Zhang
Minerals 2025, 15(7), 760; https://doi.org/10.3390/min15070760 - 20 Jul 2025
Viewed by 310
Abstract
Mining and analyzing information from multiple sources—such as geophysics and geochemistry—is a key aspect of big data-driven mineral prediction. Clustering, which groups large datasets based on distance metrics, is an essential method in multidimensional data analysis. The Two-Step Clustering (TSC) approach offers advantages [...] Read more.
Mining and analyzing information from multiple sources—such as geophysics and geochemistry—is a key aspect of big data-driven mineral prediction. Clustering, which groups large datasets based on distance metrics, is an essential method in multidimensional data analysis. The Two-Step Clustering (TSC) approach offers advantages by handling both categorical and continuous variables and automatically determining the optimal number of clusters. In this study, we applied the TSC method to mineral prediction in the northeastern margin of the Jiaolai Basin by: (i) converting residual gravity and magnetic anomalies into categorical variables using Ward clustering; and (ii) transforming 13 stream sediment elements into independent continuous variables through factor analysis. The results showed that clustering is sensitive to categorical variables and performs better with fewer categories. When variables share similar distribution characteristics, consistency between geophysical discretization and geochemical boundaries also influences clustering results. In this study, the (3 × 4) and (4 × 4) combinations yielded optimal clustering results. Cluster 3 was identified as a favorable zone for gold deposits due to its moderate gravity, low magnetism, and the enrichment in F1 (Ni–Cu–Zn), F2 (W–Mo–Bi), and F3 (As–Sb), indicating a multi-stage, shallow, hydrothermal mineralization process. This study demonstrates the effectiveness of combining Ward clustering for variable transformation with TSC for the integrated analysis of categorical and numerical data, confirming its value in multi-source data research and its potential for further application. Full article
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16 pages, 1211 KB  
Article
Exploring the Chemical Composition and Antimicrobial Activity of Extracts from the Roots and Aboveground Parts of Limonium gmelini
by Dariya Kassymova, Francesco Cairone, Donatella Ambroselli, Rosa Lanzetta, Bruno Casciaro, Aizhan Zhussupova, Deborah Quaglio, Angela Casillo, Galiya E. Zhusupova, Maria Michela Corsaro, Bruno Botta, Silvia Cammarone, Maria Luisa Mangoni, Cinzia Ingallina and Francesca Ghirga
Molecules 2025, 30(14), 3024; https://doi.org/10.3390/molecules30143024 - 18 Jul 2025
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Abstract
Limonium gmelini (Willd.) Kuntze, a plant widely used in traditional medicine, has garnered increasing attention for its diverse pharmacological activities, including anti-inflammatory, hepatoprotective, antioxidant, and antimicrobial effects. This study aimed to explore the chemical composition and biological activities of polysaccharides and [...] Read more.
Limonium gmelini (Willd.) Kuntze, a plant widely used in traditional medicine, has garnered increasing attention for its diverse pharmacological activities, including anti-inflammatory, hepatoprotective, antioxidant, and antimicrobial effects. This study aimed to explore the chemical composition and biological activities of polysaccharides and polyphenolic compounds extracted from both the roots and aboveground parts of Limonium gmelini. Several methods of extraction, including ultrasound-assisted extraction (UAE), conventional maceration (CM), and supercritical fluid extraction (SFE), were employed to obtain bioactive fractions. Chemical profiling, primarily represented by monosaccharides and polyphenolic compounds, was characterized and analyzed using proton nuclear magnetic resonance spectroscopy (1H-NMR) and gas chromatography-mass spectrometry (GC-MS) techniques. While polyphenol-rich fractions exhibited significant antibacterial activity, particularly against Staphylococcus epidermidis, polysaccharide-rich aqueous fractions showed minimal antibacterial activity. Among the methods, CM and UAE yielded higher polyphenol content, whereas SFE provided more selective extractions. Notably, methanolic SPE fractions derived from the roots were especially enriched in active polyphenols such as gallic acid, myricetin, and naringenin, and they exhibited the highest antibacterial activity against Staphylococcus epidermidis. In contrast, extracts from the aboveground parts showed more moderate activity and a partially different chemical profile. These findings underscore the importance of plant part selection and support the targeted use of root-derived polyphenol-enriched fractions from L. gmelini as promising candidates for the development of natural antibacterial agents. Further investigation is needed to isolate and validate the most active constituents for potential therapeutic applications. Full article
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