Search Results (10)

The emergence of colistin-resistant Escherichia coli (E. coli) in livestock poses a major public health concern due to its zoonotic potential and multidrug resistance (MDR). The study aimed to detect mobilized colistin resistance genes (mcr-1 to mcr-9) in E. coli isolates, along with characterizing their antimicrobial susceptibility, resistance genes, virulence genes, and whole genome sequencing. We investigated E. coli contamination in a swine slaughterhouse in Nakhon Si Thammarat Province, Thailand. A total of 200 fecal samples were collected and screened for E. coli using selective media supplemented with colistin. A total of 200 fecal samples were collected from a swine slaughterhouse and screened for E. coli using selective media supplemented with colistin. Presumptive E. coli isolates were confirmed by PCR, followed by molecular detection of mcr-1 to mcr-9 genes. Antimicrobial susceptibility testing was performed using the disk diffusion method. Selected isolates were further analyzed for additional antimicrobial resistance genes and virulence associated genes by PCR. Whole genome sequencing was conducted on representative isolates exhibiting high levels of antimicrobial resistance. Our results showed that out of 200 fecal samples, 124 presumptive E. coli isolates were recovered from a swine slaughterhouse using selective media containing colistin. PCR confirmation identified 112 isolates (90.32%) as E. coli. Molecular detection of mobilized colistin resistance (mcr) genes (82 isolates, 73.21%) demonstrated that mcr-1 (50.89%) was the most prevalent, followed by mcr-9 (25.89%) and mcr-3 (24.11%). Overall, the 82 mcr E. coli isolates showed the highest level of resistance to ampicillin (97.56%), followed by tetracycline (95.12%), piperacillin (73.17%), and chloramphenicol (65.85%). For non-mcr E. coli isolates, the highest resistance percentage was observed for ampicillin (96.67%), followed by piperacillin (80%) and tetracycline (73.33%). Among the isolates, 75% exhibited MDR phenotypes, showing 22 distinct resistance profiles. The most common MDR pattern was AMP-PIP-TE-C-S (12.5%). Additional antimicrobial resistance genes, including aadA, ampC, and bla_TEM, were detected in over 60% of a subset of 30 tested isolates. The virulence gene analysis revealed that eae (74.10%), associated with enteropathogenic E. coli (EPEC), was the predominant pathotype. Whole genome sequencing of five selected isolates confirmed the presence of multiple antimicrobial resistance and virulence determinants. In conclusion, this study reveals a high prevalence of MDR E. coli harboring colistin resistance genes (mcr-1 to mcr-9) in a swine slaughterhouse in southern Thailand. The findings highlight the potential risk of zoonotic transmission of antimicrobial resistant E. coli through the food production chain and emphasize the importance of continuous genomic surveillance and prudent antimicrobial use in livestock production systems. Full article

Background: Mobile antimicrobial resistance genes (ARGs) on plasmids or other elements enable Salmonella Typhimurium to spread resistance across hosts and environments. The emergence of multi-drug resistance (MDR) Salmonella Typhimurium has raised global concern, yet little is reported about these mobile elements from the Thailand pork supply chain, where this risk of transfer to humans remains largely uncharacterized. Methods: Between March 2023 and February 2024, 25 S. Typhimurium isolates were collected from pig carcasses in slaughterhouses and pork swabs from retail markets in northeastern Thailand. Nine representative isolates, sampled across three seasons, were subjected to Illumina whole-genome sequencing. Assemblies were analyzed for sequence types, phylogenetic relationships, antimicrobial resistance (AMR) determinants, plasmid replicons and mobilization features, functional annotation based on COG (Clusters of Orthologous Groups of proteins) classification, and comparative genomics against a reference strain. Results: Genome assemblies ranged from 4.76 to 5.00 Mb with consistent GC (guanine-cytosine) content (52.0–52.2%). Phylogenetic analysis revealed three sequence types: ST34 (77.8%), ST19, and ST1543. ST34 isolates displayed the broadest AMR gene repertoires, carrying tetracycline (tetA/tetB), sulfonamide (sul1/sul2/sul3), aminoglycoside (aadA, aph(6)-Id, aph(3″)-Ib), phenicol (floR, catA1), and β-lactam (bla_TEM-1B) genes, whereas non-ST34 isolates harbored fewer determinants. ARGs frequently co-localized with IncQ1 and Col-type plasmid replicons, MOB_H/MobA relaxases (enzymes that initiate plasmid transfer), and conjugation modules (type IV secretion and coupling proteins), often alongside virulence loci and metal resistance operons. Functional annotation showed highly conserved metabolic and housekeeping functions, while comparative genomics confirmed >90% core genome conservation, with variability concentrated in genomic islands encoding hypothetical proteins. These genomic patterns were inferred from a limited WGS dataset (nine isolates) and should therefore be considered exploratory and require confirmation in larger collections. Conclusions: Multi-drug resistant ST34 Salmonella Typhimurium predominated in the northeastern Thailand pork supply chain, with diverse resistance genes carried on IncQ1/Col-type plasmids linked to MOB_H relaxases and conjugation modules. The stability of these mobilizable elements underscores their role in sustaining MDR traits and highlights the risk of foodborne AMR transmission, reinforcing the need for continuous genomic surveillance under a One Health framework. Full article

In the Netherlands, around 52,000 dairy cows die on the primary farm each year due to natural death, euthanasia, or on-farm emergency slaughter (OFES). The decision as to what is the best option is made by the farmer, often after consulting a veterinarian, a livestock trader, or a slaughterhouse operator. To determine which factors play a role in this decision-making process, semi-structured interviews were conducted with dairy farmers, private veterinary practitioners, livestock traders, and slaughterhouse operators in the Netherlands. Dairy cattle culling decisions are influenced and limited by strict enforcement of livestock transport regulations and limited options for on-farm killing methods. Requirements regarding mortality rates imposed by the dairy industry and private quality labels for raw milk also influence culling decisions in the Netherlands. Most participants stated that restrictive conditions regarding OFES and mobile slaughterhouses (MSHs) appear to have (unintended) negative effects on cow welfare and meat salvage in general. Different interests, such as cow welfare, food safety, economic concerns of various stakeholders, the reputational interests of the dairy and beef industries, and sustainability objectives such as meat salvage can be conflictive. The results of this study show that the decision-making process regarding culling or (prolonged) veterinary treatment of dairy cattle is complex because various factors, interests, and uncertainties must be weighed. This weighing can vary between individual dairy farms and individual dairy farmers. Full article

The sustainability of the meat value chain is a topic of global importance, with slaughtering close to farms emerging as a significant measure that not only enhances animal welfare, but also integrates economic, environmental, and social aspects into the meat production process. In this study, we conducted a thorough analysis of 99 academic articles focusing on the sustainability of the meat value chain, published between 1985 and 2024. Utilizing VOSviewer software version 1.6.20, we performed both bibliometric and thematic analyses to gain insights into the evolution of research in this field. Our findings reveal a substantial increase in studies on this subject since 2017, with 80% of publications emerging in the last seven years, indicating a growing interest in this area of research. Swedish universities and researchers were identified as key contributors to this body of work, demonstrating a significant commitment to exploring the sustainability of the meat value chain. Furthermore, we observed that studies related to sustainability and the circular economy are predominantly published in journals focused on environmental issues, highlighting the interconnectedness of these concepts. This review aims to provide valuable support to researchers and academics by elucidating the boundaries and potential of research on the sustainability of the meat value chain. By shedding light on current trends and areas of focus, we hope to inspire further exploration and innovation in improving the supply chain in the future. Full article

The astringent selection criteria for milk-oriented traits in dairy cattle have rendered these animals prone to various metabolic disorders. Postpartum lactational peak and reduced feed intake lead to negative energy balance in cattle. As a compensatory mechanism, cattle start mobilizing fat reserves to meet the energy demand for vital body functions. Consequently, diminished glucose concentrations and elevated ketone body levels lead to poor ovarian function. The impaired follicular development and subpar oocyte quality diminish the conception rates, which poses significant economic repercussions. Follicular fluid is integral to the processes of follicular growth and oocyte development. Hence, the present study was performed to identify potential alterations in metabolites in the follicular fluid under in vitro culture conditions mimicking negative energy balance. Our results revealed nine distinct metabolites exhibiting differential expression in follicular fluid under negative energy balance. The differentially expressed metabolites were predominantly associated with pathways related to amino acid metabolism, lipid metabolism, signal transduction mechanisms, and membrane transport, alongside other biological processes. The identified signature metabolites may be further validated to determine oocyte fitness subjected to in vitro fertilization or embryo production from slaughterhouse source ovaries. Full article

Middle East Respiratory Syndrome (MERS-CoV) is a coronavirus-caused viral respiratory infection initially detected in Saudi Arabia in 2012. In UAE, high seroprevalence (97.1) of MERS-CoV in camels was reported in several Emirate of Abu Dhabi studies, including camels in zoos, public escorts, and slaughterhouses. The objectives of this research include simulation of MERS-CoV spread using a customized animal disease spread model (i.e., customized stochastic model for the UAE; analyzing the MERS-CoV spread and prevalence based on camels age groups and identifying the optimum control MERS-CoV strategy. This study found that controlling animal mobility is the best management technique for minimizing epidemic length and the number of affected farms. This study also found that disease dissemination differs amongst camels of three ages: camel kids under the age of one, young camels aged one to four, and adult camels aged four and up; because of their immunological state, kids, as well as adults, had greater infection rates. To save immunization costs, it is advised that certain age groups be targeted and that intense ad hoc unexpected vaccinations be avoided. According to the study, choosing the best technique must consider both efficacy and cost. Full article

Foot-and-mouth disease (FMD) is endemic in Iran and associated with a large impact on the livestock industry. Livestock mobility is recognized as one of the most important risk factors for FMD and other infectious livestock diseases’ introduction and dissemination. The description of temporal and spatial aspects of livestock mobility networks in Iran provides insights into FMD epidemiology. It also assists in the formulation of recommendations to mitigate the risk of animal disease transmission through livestock movements. This study is the first spatiotemporal description of official/registered cattle, sheep, goat, and camel movements in Iran, using records related to the period from March 2020 to August 2021 extracted from the Iran Veterinary Organization (IVO) Quarantine system. It shows that the static networks drawn by the movements of small ruminants, cattle, and camels to farms or slaughterhouses are complex and highlights the predominance of a few provinces and towns. In particular, the results show that Razavi Khorasan and West Azerbaijan provinces, major provinces for the Iranian livestock sector, are provinces where significant volumes of small ruminants and cattle are moved (from, to, or within) and, therefore, should be prioritized for targeted and timely risk reduction interventions. This study produces some of the necessary inputs for the risk assessment of FMD and similar transboundary animal diseases (TADs) spread within Iran, which is needed to regularly update the national risk-based control strategy for FMD and other TADs. Full article

The presence of Salmonella spp. on laying hen farms turns out to be a major problem for public health reasons, mainly related to foodborne illnesses that may arise due to ingestion of contaminated eggs. When Salmonella spp. infection on farms is confirmed by laboratory analysis, animal health measures are applied on the establishment, including total elimination of animals. The aim of this study is to describe three different methods of managing Salmonella enteritidis-infected laying hen farms, all of which were used within the Moselle department (France). The methods chosen, culling, use of a mobile CO₂ container, or lethal injection with T-61, depend on specific starting conditions, including the number of birds and proximity to an authorized slaughterhouse. This study, therefore, helps to identify the main problems with each method and provides recommendations for improving the management of Salmonella spp.-infected laying hen farms, where antibiotics cannot be used. Full article

Pig counting is an important task in pig sales and breeding supervision. Currently, manual counting is low-efficiency and high-cost and presents challenges in terms of statistical analysis. In response to the difficulties faced in pig part feature detection, the loss of tracking due to rapid movement, and the large counting deviation in pig video tracking and counting research, this paper proposes an improved pig counting algorithm (Mobile Pig Counting Algorithm with YOLOv5xpig and DeepSORTPig (MPC-YD)) based on YOLOv5 + DeepSORT model. The algorithm improves the detection rate of pig body parts by adding two different sizes of SPP networks and using SoftPool instead of MaxPool operations in YOLOv5x. In addition, the algorithm includes a pig reidentification network, a pig-tracking method based on spatial state correction, and a pig counting method based on frame number judgment on the DeepSORT algorithm to improve pig tracking accuracy. Experimental analysis shows that the MPC-YD algorithm achieves an average precision of 99.24% in pig object detection and an accuracy of 85.32% in multitarget pig tracking. In the aisle environment of the slaughterhouse, the MPC-YD algorithm achieves a correlation coefficient (R²) of 98.14% in pig counting from video, and it achieves stable pig counting in a breeding environment. The algorithm has a wide range of application prospects. Full article

Class 1 integrons are mobile gene elements (MGEs) containing qacEΔ1 that are resistant to quaternary ammonium compound (QAC) disinfectants. This study compared the abundances of class 1 integrons and antiseptic resistance genes in municipal (M) and swine slaughterhouse (S) wastewater treatment plants (WWTPs) and investigated the presence of class 1 integrons and antiseptic resistance genes in methicillin-resistant Staphylococcus aureus (MRSA) isolated from wastewater samples. The abundances of intI1 and qacEΔ1 genes in 96 wastewater samples were quantified using real-time quantitative polymerase chain reaction (real-time qPCR), and 113 MRSA isolates recovered from the wastewater samples were detected class 1 integrons and linked antiseptic resistance genes (qacEΔ1), and minimum inhibitory concentrations (MICs) for QAC antiseptics. The intI1 and qacEΔ1 genes were detected in all the wastewater samples, and they were more abundant in S-WWTP samples than in M-WWTP samples. A higher percentage of MRSA isolates carried qacEΔ1 in MRSA from swine wastewater samples (62.8%) than in municipal MRSA (3.7%). All the MRSA isolates showed high MICs for antiseptic agents. This study provides important evidence regarding the abundances of intI1 and qacEΔ1 genes in municipal and swine slaughterhouse wastewater, and antiseptic-resistant MRSA strains were detected in swine slaughterhouse wastewater. Full article