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Keywords = moss secondary metabolite

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15 pages, 1475 KB  
Article
Comparative Metabolite Profiling of Antarctic and Korean Mosses: Insights into Adaptation Mechanisms of Antarctic Moss Species
by Marufa Naznin, Raisul Awal Mahmood, Md Badrul Alam, Kil Ho Shin, Kyungwon Min, Sang-Han Lee, Hyoungseok Lee and Sunghwan Kim
Plants 2025, 14(14), 2148; https://doi.org/10.3390/plants14142148 - 11 Jul 2025
Viewed by 837
Abstract
This study investigates the relationship between secondary metabolites and stress tolerance in moss species, with a specific emphasis on comparing Antarctic and Korean mosses. Analyses of total phenolic content (TPC) and total flavonoid content (TFC) revealed that Antarctic mosses contain these compounds at [...] Read more.
This study investigates the relationship between secondary metabolites and stress tolerance in moss species, with a specific emphasis on comparing Antarctic and Korean mosses. Analyses of total phenolic content (TPC) and total flavonoid content (TFC) revealed that Antarctic mosses contain these compounds at significantly higher levels compared to the Korean mosses. These findings are consistent with greater antioxidant activities observed in Antarctic mosses through DPPH and ABTS•+ radical scavenging assays. In this study, a total of 620 metabolites were identified from the moss samples. The results showed that Antarctic mosses exhibited a high number and diversity of compounds including terpenoids, flavonoids, lipids, and other classes. Additionally, Antarctic mosses had fewer lipids with carbon chain lengths below 18 and a higher content of unsaturated lipids, indicating adaptations to maintain membrane fluidity under cold stress. The phylogenetic relationships suggested a correlation between metabolite profiles and genetic adaptations between these species. This research highlights the complex biochemical strategies that mosses, particularly those in Antarctic regions, employ to adapt the environmental stressors. The high abundance of secondary metabolites in Antarctic mosses not only serves as a defense mechanism against oxidative stress but also suggests their potential applications in various biotechnological aspects. This study reveals new avenues for exploring the ecological roles and potential uses of these resilient plant species. Full article
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13 pages, 2885 KB  
Article
Exploring In Vitro Immunomodulatory Properties of Moss Atrichum undulatum Extracts
by Tanja Lunić, Marija Rakić, Aneta Sabovljević, Marko Sabovljević, Tamara Filipović, Bojan Božić and Biljana Božić Nedeljković
Plants 2024, 13(10), 1349; https://doi.org/10.3390/plants13101349 - 13 May 2024
Viewed by 1768
Abstract
Bryophytes are rich sources of diverse secondary metabolites with a wide range of biological activities, including anti-inflammatory, antitumor and antimicrobial effects. The aim of this study was to investigate the chemical composition of extracts from two different genotypes (Serbian and Hungarian) of the [...] Read more.
Bryophytes are rich sources of diverse secondary metabolites with a wide range of biological activities, including anti-inflammatory, antitumor and antimicrobial effects. The aim of this study was to investigate the chemical composition of extracts from two different genotypes (Serbian and Hungarian) of the axenic moss Atrichum undulatum and evaluate the immunomodulatory potential of the prepared extracts in vitro. Both genotypes of moss samples were cultivated in vitro and subsequently extracted in a Soxhlet apparatus with methanol or ethyl acetate. The highest concentration of total phenolic compounds was found in the methanolic extract of the Serbian genotype (54.25 mg GAE/g extract), while the ethyl acetate extract of the Hungarian genotype showed the highest concentration of phenolic acids (163.20 mg CAE/extract), flavonoids (35.57 mg QE/extract), and flavonols (2.25 mg QE/extract). The extracts showed anti-neuroinflammatory properties by reducing the production of reactive oxygen species, nitric oxide, and tumor necrosis factor alpha by lipopolysaccharide-stimulated microglial cells. Moreover, they mitigated the cytotoxic effects of the pro-inflammatory mediators produced by activated microglia on neurons. The data obtained suggest that extracts from A. undulatum moss have promising anti-neuroinflammatory and neuroprotective properties, making them interesting candidates for further research to combat neuroinflammation. Full article
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19 pages, 5032 KB  
Article
Ultrastructural, Energy-Dispersive X-ray Spectroscopy, Chemical Study and LC-DAD-QToF Chemical Characterization of Cetraria islandica (L.) Ach
by Nurlen Manassov, Mamdouh Nabil Samy, Ubaidilla Datkhayev, Bharathi Avula, Sebastian John Adams, Kumar Katragunta, Vijayasankar Raman, Ikhlas A. Khan and Samir A. Ross
Molecules 2023, 28(11), 4493; https://doi.org/10.3390/molecules28114493 - 1 Jun 2023
Cited by 6 | Viewed by 3003
Abstract
The lichen Cetraria islandica (L.) Ach. has been used in traditional and modern medicines for its many biological properties such as immunological, immunomodulating, antioxidant, antimicrobial, and anti-inflammatory activities. This species is gaining popularity in the market, with interest from many industries for selling [...] Read more.
The lichen Cetraria islandica (L.) Ach. has been used in traditional and modern medicines for its many biological properties such as immunological, immunomodulating, antioxidant, antimicrobial, and anti-inflammatory activities. This species is gaining popularity in the market, with interest from many industries for selling as medicines, dietary supplements, and daily herbal drinks. This study profiled the morpho-anatomical features by light, fluorescence, and scanning electron microscopy; conducted an elemental analysis using energy-dispersive X-ray spectroscopy; and phytochemical analysis was performed using high-resolution mass spectrometry combined with a liquid chromatography system (LC-DAD-QToF) of C. islandica. In total, 37 compounds were identified and characterized based on comparisons with the literature data, retention times, and their mass fragmentation mechanism/s. The identified compounds were classified under five different classes, i.e., depsidones, depsides, dibenzofurans, aliphatic acids, and others that contain simple organic acids in majority. Two major compounds (fumaroprotocetraric acid and cetraric acid) were identified in the aqueous ethanolic and ethanolic extracts of C. islandica lichen. This detailed morpho-anatomical, EDS spectroscopy, and the developed LC-DAD-QToF approach for C. islandica will be important for correct species identification and can serve as a useful tool for taxonomical validation and chemical characterization. Additionally, chemical study of the extract of C. islandica led to isolation and structural elucidation of nine compounds, namely cetraric acid (1), 9′-(O-methyl)protocetraric acid (2), usnic acid (3), ergosterol peroxide (4), oleic acid (5), palmitic acid (6), stearic acid (7), sucrose (8), and arabinitol (9). Full article
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13 pages, 1154 KB  
Article
Determination of Pentacyclic Triterpenoids in Plant Biomass by Porous Graphitic Carbon Liquid Chromatography—Tandem Mass Spectrometry
by Ilya S. Voronov, Danil I. Falev, Anna V. Faleva, Nikolay V. Ul’yanovskii and Dmitry S. Kosyakov
Molecules 2023, 28(9), 3945; https://doi.org/10.3390/molecules28093945 - 7 May 2023
Cited by 5 | Viewed by 2557
Abstract
Pentacyclic triterpenoids (PCTs), which possess a number of bioactive properties, are considered one of the most important classes of secondary plant metabolites. Their chromatographic determination in plant biomass is complicated by the need to separate a large number of structurally similar compounds belonging [...] Read more.
Pentacyclic triterpenoids (PCTs), which possess a number of bioactive properties, are considered one of the most important classes of secondary plant metabolites. Their chromatographic determination in plant biomass is complicated by the need to separate a large number of structurally similar compounds belonging to several classes that differ greatly in polarity (monools, diols, and triterpenic acids). This study proposes a rapid, sensitive, and low-cost method for the simultaneous quantification of ten PCTs (3β-taraxerol, lupeol, β-amyrin, α-amyrin, betulin, erythrodiol, uvaol, betulinic, oleanolic, and ursolic acids) by high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) using porous graphitic carbon (Hypercarb) as a stationary phase capable of hydrophobic retention and specific interactions with analytes. Revealing the effects of the mobile phase composition, pH, ionic strength, and column temperature on retention and selection of chromatographic conditions on this basis allowed for the effective separation of all target analytes within 8 min in gradient elution mode and attaining limits of detection in the range of 4–104 µg L−1. The developed method was fully validated and successfully tested in the determination of PCTs in common haircap (Polytrichum commune) and prairie sphagnum (Sphagnum palustre) mosses, and fireweed (Chamaenerion angustifolium) stems and leaves. Full article
(This article belongs to the Section Analytical Chemistry)
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16 pages, 10006 KB  
Article
Is Soil Covered with Climacium dendroides More Conducive to the Germination of Pinus koraiensis Seeds?
by Meixue Qu, Wenbiao Duan, Lixin Chen, Yafei Wang, Xifeng Yang and Sijing Meng
Forests 2023, 14(4), 798; https://doi.org/10.3390/f14040798 - 13 Apr 2023
Cited by 1 | Viewed by 1809
Abstract
Our previous investigation has indicated that the natural regeneration of Pinus koraiensis occurs solely in soil covered by Climacium dendroides. This study aimed to determine whether C. dendroides-covered soil enhances seed germination or reduces seed decay. The experiment was divided into [...] Read more.
Our previous investigation has indicated that the natural regeneration of Pinus koraiensis occurs solely in soil covered by Climacium dendroides. This study aimed to determine whether C. dendroides-covered soil enhances seed germination or reduces seed decay. The experiment was divided into two parts: a simulated natural regeneration field experiment, and a greenhouse-based potted trial. For the field experiment, soils were categorized into three treatments based on C. dendroides coverage: high coverage (HCD), low coverage (LCD), and no coverage (NCD). Four forest microsites were considered: a gap in the mixed coniferous forest (GCF), a closed stand in the mixed coniferous forest (SCF), a gap in the mixed broadleaf–coniferous forest (GBC), and a closed stand in the mixed broadleaf–coniferous forest (SBC). The greenhouse experiment consisted of four treatments: HCD and LCD with similar C. dendroides coverage as the field experiment, litter-covered soil (LC), and bare soil (CK). P. koraiensis seeds were sown in each treatment’s soil in both the field and greenhouse experiments and collected after one year to analyze their germination rates, decay rates, and antioxidant capacity based on each treatment. Correlations of the germination rate, decay rate, and antioxidant capacity of P. koraiensis seeds with the soil water content (SWC) and secondary metabolites of C. dendroides in soil were examined. The results revealed that, compared to soil without C. dendroides, HCD exhibited higher germination rates (increased by 15.2% and 32.5% for dormant field seeds and dormancy-broken greenhouse seeds, respectively), ABTS+ free radical scavenging activity (RSAABTS) (22.84% and 5.98% increases, respectively), catalase activity (CAT) (5.49 U·min−1·g−1 and 1.71 U·min−1·g−1 increases, respectively), and superoxide dismutase (SOD) activity (0.33 U·g−1 and 0.68 U·g−1 increases, respectively). In the field experiment, seeds in HCD exhibited higher DPPH free radical scavenging activity (RSADPPH) (26.24% increase) and peroxidase (POD) activity (4.0 U·min−1·g−1 increase) compared to seeds in NCD. Greenhouse seeds in HCD showed a lower rot rate (27.6% decrease) than seeds in CK. In both the field and greenhouse experiments, SWC, soil p-hydroxybenzoic acid content (PHBA), soil p-coumaric acid content (PCMA), and soil vanillic acid content (VA) were significantly positively correlated with the germination rate and antioxidant capacity of P. koraiensis. Soil total phenolic content (TPH) and total flavonoid content (TFL) had minimal impacts on P. koraiensis seed germination. The primary findings suggest that C. dendroides may alleviate drought stress and enhance seed antioxidant and germination capabilities by increasing SWC, PHBA, PCMA, and VA. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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12 pages, 1626 KB  
Article
New Oligomeric Dihydrochalcones in the Moss Polytrichum commune: Identification, Isolation, and Antioxidant Activity
by Anna V. Faleva, Nikolay V. Ul’yanovskii, Danil I. Falev, Aleksandra A. Onuchina, Nikolay A. Budaev and Dmitry S. Kosyakov
Metabolites 2022, 12(10), 974; https://doi.org/10.3390/metabo12100974 - 14 Oct 2022
Cited by 10 | Viewed by 2946
Abstract
One of the most widespread representatives of mosses in the temperate and boreal latitudes of the Northern Hemisphere is common haircap (Polytrichum commune), which is known as the largest moss in the world and widely used in traditional herbal medicine. Polyphenolic [...] Read more.
One of the most widespread representatives of mosses in the temperate and boreal latitudes of the Northern Hemisphere is common haircap (Polytrichum commune), which is known as the largest moss in the world and widely used in traditional herbal medicine. Polyphenolic compounds constitute one of the most important groups of biologically active secondary metabolites of P. commune, however, the available information on their chemical composition is still incomplete and contradictory. In the present study, a group of dihydrochalcone polyphenolic derivatives that were not previously found in mosses was isolated from P. commune biomass using pressurized liquid extraction with aqueous acetone. The combination of two-dimensional NMR spectroscopy and high-performance liquid chromatography–high-resolution mass spectrometry allowed for identifying them as 3-hydroxyphloretin oligomers formed through a carbon–carbon bond between phloroglucinol and pyrocatechol moieties (“head-to-tail” coupling), with a polymerization degree of 2–5. The individual compounds isolated by preparative reverse-phase HPLC had a purity of 71 to 97% and demonstrated high radical scavenging activity (17.5–42.5% with respect to Trolox) determined by the photochemiluminescence method. Along with the low toxicity predicted by QSAR/QSTR algorithms, this makes 3-hydroxyphloretin oligomers a promising source for the production of biologically active food additives and pharmaceuticals. Full article
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15 pages, 2965 KB  
Article
Antimicrobial Activities of Secondary Metabolites from Model Mosses
by Lia R. Valeeva, Ashley L. Dague, Mitchell H. Hall, Anastasia E. Tikhonova, Margarita R. Sharipova, Monica A. Valentovic, Lydia M. Bogomolnaya and Eugene V. Shakirov
Antibiotics 2022, 11(8), 1004; https://doi.org/10.3390/antibiotics11081004 - 26 Jul 2022
Cited by 15 | Viewed by 4475
Abstract
Plants synthetize a large spectrum of secondary metabolites with substantial structural and functional diversity, making them a rich reservoir of new biologically active compounds. Among different plant lineages, the evolutionarily ancient branch of non-vascular plants (Bryophytes) is of particular interest as these organisms [...] Read more.
Plants synthetize a large spectrum of secondary metabolites with substantial structural and functional diversity, making them a rich reservoir of new biologically active compounds. Among different plant lineages, the evolutionarily ancient branch of non-vascular plants (Bryophytes) is of particular interest as these organisms produce many unique biologically active compounds with highly promising antibacterial properties. Here, we characterized antibacterial activity of metabolites produced by different ecotypes (strains) of the model mosses Physcomitrium patens and Sphagnum fallax. Ethanol and hexane moss extracts harbor moderate but unstable antibacterial activity, representing polar and non-polar intracellular moss metabolites, respectively. In contrast, high antibacterial activity that was relatively stable was detected in soluble exudate fractions of P. patens moss. Antibacterial activity levels in P. patens exudates significantly increased over four weeks of moss cultivation in liquid culture. Interestingly, secreted moss metabolites are only active against a number of Gram-positive, but not Gram-negative, bacteria. Size fractionation, thermostability and sensitivity to proteinase K assays indicated that the secreted bioactive compounds are relatively small (less than <10 kDa). Further analysis and molecular identification of antibacterial exudate components, combined with bioinformatic analysis of model moss genomes, will be instrumental in the identification of specific genes involved in the bioactive metabolite biosynthesis. Full article
(This article belongs to the Special Issue Antimicrobial Natural Products)
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21 pages, 1674 KB  
Review
Modern Use of Bryophytes as a Source of Secondary Metabolites
by Michał Dziwak, Katarzyna Wróblewska, Antoni Szumny and Renata Galek
Agronomy 2022, 12(6), 1456; https://doi.org/10.3390/agronomy12061456 - 17 Jun 2022
Cited by 25 | Viewed by 9787
Abstract
Bryophytes constitute a heterogeneous group of plants which includes three clades: approximately 14,000 species of mosses (Bryophyta), 6000 species of liverworts (Marchantiophyta), and 300 species of hornworts (Anthocerotophyta). They are common in almost all ecosystems, where they play important roles. Bryophytes lack developed [...] Read more.
Bryophytes constitute a heterogeneous group of plants which includes three clades: approximately 14,000 species of mosses (Bryophyta), 6000 species of liverworts (Marchantiophyta), and 300 species of hornworts (Anthocerotophyta). They are common in almost all ecosystems, where they play important roles. Bryophytes lack developed physical barriers, yet they are rarely attacked by herbivores or pathogens. Instead, they have acquired the ability to produce a wide range of secondary metabolites with diverse functions, such as phytotoxic, antibacterial, antifungal, insect antifeedant, and molluscicidal activities. Secondary metabolites in bryophytes can also be involved in stress tolerance, i.e., in UV-absorptive and drought- and freezing-tolerant activities. Due to these properties, for centuries bryophytes have been used to combat health problems in many cultures on different continents. Currently, scientists are discovering new, unique compounds in bryophytes with potential for practical use, which, in the age of drug resistance, may be of considerable importance. The aim of this review is to present bryophytes as a potential source of compounds with miscellaneous possible uses, with a focus on volatile compounds and antibacterial, antifungal, and cytotoxic potential, and as sources of materials for further promising research. The paper also briefly refers to the methods of compound extraction and acquisition. Formulas of compounds were drawn by the authors using ChemDraw software (PerkinElmer, Boston, MA, USA) with reference to data published in various papers, the ACD/Labs dictionary database, PubChem, and Scopus. The data were gathered in February 2022. Full article
(This article belongs to the Special Issue Chemical Diversity, Yield and Quality of Aromatic Plant)
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32 pages, 4456 KB  
Article
An Evaluation of Aluminum Tolerant Pseudomonas aeruginosa A7 for In Vivo Suppression of Fusarium Wilt of Chickpea Caused by Fusarium oxysporum f. sp. ciceris and Growth Promotion of Chickpea
by Atifa Begum Mozumder, Kakoli Chanda, Ringhoilal Chorei and Himanshu Kishore Prasad
Microorganisms 2022, 10(3), 568; https://doi.org/10.3390/microorganisms10030568 - 5 Mar 2022
Cited by 15 | Viewed by 4777
Abstract
Chickpea wilt, caused by Fusarium oxysporum f. sp. ciceris, is a disease that decreases chickpea productivity and quality and can reduce its yield by as much as 15%. A newly isolated, moss rhizoid-associated Pseudomonas aeruginosa strain A7, demonstrated strong inhibition of Fusarium [...] Read more.
Chickpea wilt, caused by Fusarium oxysporum f. sp. ciceris, is a disease that decreases chickpea productivity and quality and can reduce its yield by as much as 15%. A newly isolated, moss rhizoid-associated Pseudomonas aeruginosa strain A7, demonstrated strong inhibition of Fusarium oxysporum f. sp. ciceris growth. An in vitro antimicrobial assay revealed A7 to suppress the growth of several fungal and bacterial plant pathogens by secreting secondary metabolites and by producing volatile compounds. In an in vivo pot experiment with Fusarium wilt infection in chickpea, the antagonist A7 exhibited a disease reduction by 77 ± 1.5%, and significantly reduced the disease incidence and severity indexes. Furthermore, A7 promoted chickpea growth in terms of root and shoot length and dry biomass during pot assay. The strain exhibited several traits associated with plant growth promotion, extracellular enzymatic production, and stress tolerance. Under aluminum stress conditions, in vitro growth of chickpea plants by A7 resulted in a significant increase in root length and plant biomass production. Additionally, hallmark genes for antibiotics production were identified in A7. The methanol extract of strain A7 demonstrated antimicrobial activity, leading to the identification of various antimicrobial compounds based on retention time and molecular weight. These findings strongly suggest that the strain’s significant biocontrol potential and plant growth enhancement could be a potential environmentally friendly process in agricultural crop production. Full article
(This article belongs to the Section Plant Microbe Interactions)
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19 pages, 2366 KB  
Article
The Influence of Seasonality on Secondary Metabolite Profiles and Neuroprotective Activities of Moss Hypnum cupressiforme Extracts: In Vitro and In Silico Study
by Tanja M. Lunić, Marija R. Mandić, Mariana M. Oalđe Pavlović, Aneta D. Sabovljević, Marko S. Sabovljević, Biljana Đ. Božić Nedeljković and Bojan Đ. Božić
Plants 2022, 11(1), 123; https://doi.org/10.3390/plants11010123 - 1 Jan 2022
Cited by 17 | Viewed by 4353
Abstract
Numerous representatives of mosses, including Hypnum cupressiforme, have been used to alleviate different inflammation-related conditions. However, the mode of action underlying this anti-inflammatory potential has been poorly understood. Moreover, the influence of seasonality on the chemical composition and biological activity of mosses [...] Read more.
Numerous representatives of mosses, including Hypnum cupressiforme, have been used to alleviate different inflammation-related conditions. However, the mode of action underlying this anti-inflammatory potential has been poorly understood. Moreover, the influence of seasonality on the chemical composition and biological activity of mosses is generally overlooked. This study aimed to investigate the influence of seasonal changes (spring, summer, and autumn) on secondary metabolite composition and biological activities of ethyl acetate H. cupressiforme extracts. Antioxidant activity was measured using β-carotene bleaching assay, while MTT, NBT, ELISA, and Griess assays were carried out to explore the anti-neuroinflammatory and neuroprotective potential of extracts. Inhibitory activities on acetylcholinesterase and tyrosinase were assessed experimentally and by docking analysis. The highest content of secondary metabolites and antioxidant activity were observed in moss during the summer. Extracts inhibited the secretion of ROS, NO, TNF-α, and IL-6, alleviating the inflammatory potential of H2O2 and LPS in microglial and neuronal cells. Strong inhibitory effects on acetylcholinesterase and tyrosinase were observed in vitro. Docking analyses revealed high-affinity interactions of secondary metabolites present in H. cupressiforme with important enzyme residues. Altogether, these results reveal the neuroprotective potential and the significance of seasonal fluctuations on secondary metabolite content and biological activities in moss H. cupressiforme. Full article
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15 pages, 2801 KB  
Article
A New High-Throughput Screening Method to Detect Antimicrobial Volatiles from Metagenomic Clone Libraries
by Franz Stocker, Melanie M. Obermeier, Katharina Resch, Gabriele Berg and Christina A. Müller Bogotá
Antibiotics 2020, 9(11), 726; https://doi.org/10.3390/antibiotics9110726 - 22 Oct 2020
Cited by 2 | Viewed by 3571
Abstract
The ever-growing spread of resistance in medicine and agriculture highlights the need to identify new antimicrobials. Microbial volatile organic compounds (VOCs) are one of the most promising groups of chemicals to meet this need. These rarely exploited molecules exhibit antimicrobial activity and their [...] Read more.
The ever-growing spread of resistance in medicine and agriculture highlights the need to identify new antimicrobials. Microbial volatile organic compounds (VOCs) are one of the most promising groups of chemicals to meet this need. These rarely exploited molecules exhibit antimicrobial activity and their high vapour pressure makes them ideal for application in surface sterilisation, and in particular, in biofumigation. Therefore, we adapted the previously developed Two Clamp VOCs Assay (TCVA) to a new high-throughput screening for the detection of novel antifungal VOCs from metagenomic clone libraries. As a proof of concept, we tested the new high-throughput TCVA (htTCVA) by sourcing a moss metagenomic library against Fusarium culmorum. This led to the identification of five clones that inhibited the growth of mycelium and spores in vitro by up to 8% and 30% and subsequently, to the identification of VOCs that are potentially, and in part responsible for the clones’ antifungal activity. For these VOCs, the in vitro effect of the pure compounds was as high as 100%. These results demonstrate the robustness and feasibility of the htTCVA, which provides access to completely new and unexplored biosynthetic pathways and their secondary metabolites. Full article
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18 pages, 2777 KB  
Article
Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species
by Kristian Peters, Hendrik Treutler, Stefanie Döll, Alida S. D. Kindt, Thomas Hankemeier and Steffen Neumann
Metabolites 2019, 9(10), 222; https://doi.org/10.3390/metabo9100222 - 11 Oct 2019
Cited by 42 | Viewed by 8128
Abstract
The central aim in ecometabolomics and chemical ecology is to pinpoint chemical features that explain molecular functioning. The greatest challenge is the identification of compounds due to the lack of constitutive reference spectra, the large number of completely unknown compounds, and bioinformatic methods [...] Read more.
The central aim in ecometabolomics and chemical ecology is to pinpoint chemical features that explain molecular functioning. The greatest challenge is the identification of compounds due to the lack of constitutive reference spectra, the large number of completely unknown compounds, and bioinformatic methods to analyze the big data. In this study we present an interdisciplinary methodological framework that extends ultra-performance liquid chromatography coupled to electrospray ionization quadrupole time-of-flight mass spectrometry (UPLC/ESI-QTOF-MS) with data-dependent acquisition (DDA-MS) and the automated in silico classification of fragment peaks into compound classes. We synthesize findings from a prior study that explored the influence of seasonal variations on the chemodiversity of secondary metabolites in nine bryophyte species. Here we reuse and extend the representative dataset with DDA-MS data. Hierarchical clustering, heatmaps, dbRDA, and ANOVA with post-hoc Tukey HSD were used to determine relationships of the study factors species, seasons, and ecological characteristics. The tested bryophytes showed species-specific metabolic responses to seasonal variations (50% vs. 5% of explained variation). Marchantia polymorpha, Plagiomnium undulatum, and Polytrichum strictum were biochemically most diverse and unique. Flavonoids and sesquiterpenoids were upregulated in all bryophytes in the growing seasons. We identified ecological functioning of compound classes indicating light protection (flavonoids), biotic and pathogen interactions (sesquiterpenoids, flavonoids), low temperature and desiccation tolerance (glycosides, sesquiterpenoids, anthocyanins, lactones), and moss growth supporting anatomic structures (few methoxyphenols and cinnamic acids as part of proto-lignin constituents). The reusable bioinformatic framework of this study can differentiate species based on automated compound classification. Our study allows detailed insights into the ecological roles of biochemical constituents of bryophytes with regard to seasonal variations. We demonstrate that compound classification can be improved with adding constitutive reference spectra to existing spectral libraries. We also show that generalization on compound classes improves our understanding of molecular ecological functioning and can be used to generate new research hypotheses. Full article
(This article belongs to the Special Issue Ecometabolomics)
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21 pages, 6026 KB  
Article
Biosynthetic Gene Content of the ‘Perfume Lichens’ Evernia prunastri and Pseudevernia furfuracea
by Anjuli Calchera, Francesco Dal Grande, Helge B. Bode and Imke Schmitt
Molecules 2019, 24(1), 203; https://doi.org/10.3390/molecules24010203 - 8 Jan 2019
Cited by 37 | Viewed by 8101
Abstract
Lichen-forming fungi produce a vast number of unique natural products with a wide variety of biological activities and human uses. Although lichens have remarkable potential in natural product research and industry, the molecular mechanisms underlying the biosynthesis of lichen metabolites are poorly understood. [...] Read more.
Lichen-forming fungi produce a vast number of unique natural products with a wide variety of biological activities and human uses. Although lichens have remarkable potential in natural product research and industry, the molecular mechanisms underlying the biosynthesis of lichen metabolites are poorly understood. Here we use genome mining and comparative genomics to assess biosynthetic gene clusters and their putative regulators in the genomes of two lichen-forming fungi, which have substantial commercial value in the perfume industry, Evernia prunastri and Pseudevernia furfuracea. We report a total of 80 biosynthetic gene clusters (polyketide synthases (PKS), non-ribosomal peptide synthetases and terpene synthases) in E. prunastri and 51 in P. furfuracea. We present an in-depth comparison of 11 clusters, which show high homology between the two species. A ketosynthase (KS) phylogeny shows that biosynthetic gene clusters from E. prunastri and P. furfuracea are widespread across the Fungi. The phylogeny includes 15 genomes of lichenized fungi and all fungal PKSs with known functions from the MIBiG database. Phylogenetically closely related KS domains predict not only similar PKS architecture but also similar cluster architecture. Our study highlights the untapped biosynthetic richness of lichen-forming fungi, provides new insights into lichen biosynthetic pathways and facilitates heterologous expression of lichen biosynthetic gene clusters. Full article
(This article belongs to the Special Issue Lichens: Chemistry, Ecological and Biological Activities II)
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23 pages, 1122 KB  
Article
Chemical Composition Analysis, Antimicrobial Activity and Cytotoxicity Screening of Moss Extracts (Moss Phytochemistry)
by Laura Klavina, Gunta Springe, Vizma Nikolajeva, Illia Martsinkevich, Ilva Nakurte, Diana Dzabijeva and Iveta Steinberga
Molecules 2015, 20(9), 17221-17243; https://doi.org/10.3390/molecules200917221 - 18 Sep 2015
Cited by 77 | Viewed by 12354
Abstract
Mosses have been neglected as a study subject for a long time. Recent research shows that mosses contain remarkable and unique substances with high biological activity. The aim of this study, accordingly, was to analyze the composition of mosses and to screen their [...] Read more.
Mosses have been neglected as a study subject for a long time. Recent research shows that mosses contain remarkable and unique substances with high biological activity. The aim of this study, accordingly, was to analyze the composition of mosses and to screen their antimicrobial and anticancer activity. The total concentration of polyphenols and carbohydrates, the amount of dry residue and the radical scavenging activity were determined for a preliminary evaluation of the chemical composition of moss extracts. In order to analyze and identify the substances present in mosses, two types of extrahents (chloroform, ethanol) and the GC/MS and LC-TOF-MS methods were used. The antimicrobial activity was tested on four bacteria strains, and the anticancer activity on six cancer cell lines. The obtained results show the presence of a high number of primary (fatty acids and amino acids), but mainly secondary metabolites in moss extracts—including, sterols, terpenoids, polyphenols and others—and a high activity with respect to the studied test organisms. Full article
(This article belongs to the Section Natural Products Chemistry)
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23 pages, 407 KB  
Review
Activation of Defense Mechanisms against Pathogens in Mosses and Flowering Plants
by Inés Ponce de León and Marcos Montesano
Int. J. Mol. Sci. 2013, 14(2), 3178-3200; https://doi.org/10.3390/ijms14023178 - 4 Feb 2013
Cited by 105 | Viewed by 12906
Abstract
During evolution, plants have developed mechanisms to cope with and adapt to different types of stress, including microbial infection. Once the stress is sensed, signaling pathways are activated, leading to the induced expression of genes with different roles in defense. Mosses (Bryophytes) are [...] Read more.
During evolution, plants have developed mechanisms to cope with and adapt to different types of stress, including microbial infection. Once the stress is sensed, signaling pathways are activated, leading to the induced expression of genes with different roles in defense. Mosses (Bryophytes) are non-vascular plants that diverged from flowering plants more than 450 million years ago, allowing comparative studies of the evolution of defense-related genes and defensive metabolites produced after microbial infection. The ancestral position among land plants, the sequenced genome and the feasibility of generating targeted knock-out mutants by homologous recombination has made the moss Physcomitrella patens an attractive model to perform functional studies of plant genes involved in stress responses. This paper reviews the current knowledge of inducible defense mechanisms in P. patens and compares them to those activated in flowering plants after pathogen assault, including the reinforcement of the cell wall, ROS production, programmed cell death, activation of defense genes and synthesis of secondary metabolites and defense hormones. The knowledge generated in P. patens together with comparative studies in flowering plants will help to identify key components in plant defense responses and to design novel strategies to enhance resistance to biotic stress. Full article
(This article belongs to the Special Issue Abiotic and Biotic Stress Tolerance Mechanisms in Plants)
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