Search Results (102)

Pearl oyster aquaculture is severely constrained by biofouling organisms, particularly fouling oysters, which substantially impair pearl oyster growth and farming efficiency. This study investigated the selective oyster-feeding behavior of the predatory gastropod Thais luteostoma and evaluated its potential as an ecological biofouling control agent in pearl oyster culture. Field co-culture experiments showed that T. luteostoma did not adversely affect the survival of Pinctada fucata martensii, while effectively reducing biofouling loads and significantly improving pearl oyster growth performance. Laboratory behavioral assays and quantitative analyses revealed a pronounced feeding preference for oysters in T. luteostoma, as evidenced by a higher number of feeding individuals, longer total feeding duration, and greater spatial overlap between feeding hotspots and oyster locations. In addition, digestive enzyme assays indicated marked post-feeding physiological responses in T. luteostoma, with a stronger induction of digestive activity in the digestive gland than in the stomach. Collectively, these findings suggest that T. luteostoma represents a promising and sustainable biological option for managing biofouling in pearl oyster aquaculture, with potential applicability to other high-value bivalve farming systems. Full article

The coastal zone of the Gulf of Guinea is characterised by the intensive harvesting of Crassostrea tulipa oysters, locally known as ‘Adakpin’ or ‘Atcha’, which serve as a vital source of income for local communities. This study aims to identify the optimal areas, depths, and seasonal periods that favour the growth of juvenile C. tulipa oysters in the coastal lagoon waters of southern Benin. Relatively uniform juvenile oysters were cultured at three depths (surface, mid-water, and bottom) in three production zones (Ahouandji, Dégouè, and Djondji) over the course of one year, covering the four climatic seasons of southern Benin. Juvenile oyster growth (in length, width, height, and weight) was monitored monthly. Simultaneously, key environmental variables (salinity, temperature, pH, water transparency, and dissolved oxygen) were measured in situ to evaluate their influence. A three-way ANOVA revealed that the month of the year had a significant main effect on oyster growth, defining two main growth periods: from October to December 2022 and from March to May 2023. Growth rates decreased during December 2022 to January 2023 and showed no growth from January to March 2023. Growth stopped again from May to September 2023, after the second growth period. Although the main effects of the farming level and production zone were not individually significant, significant two-way interactions were found for ‘Month × Depth’ and ‘Month × Production Zone’. This indicates that the effect of the month on growth depended on both the depth (farming level) and the location (production zone). Survival was highest at the mid-water column (97%) and at the surface (95%). Throughout the study period, survival rates remained consistently high, with the lowest monthly value at or above 80%. Full article

Shellfish restoration and aquaculture are considered as innovative methods to mitigate in-water nutrients in coastal waters. Water quality was examined at two oyster aquaculture farms in Potter (2021–2023) and Pt Judith (2023) Ponds in southern Rhode Island, USA. Twice monthly, on a flooding tide, upstream and downstream positions were established and water quality measures were made using fluorometry sondes and laboratory analysis. Significant differences in chlorophyll a, turbidity, and nutrient concentrations between upstream and downstream positions were identified; however, the differences were not consistently greater upstream or downstream. Percent Chl a removed varied from −74% to 64% at Potter Pond among years and −51% to 29% at Point Judith Pond, indicating a deficit or increase in Chl a concentration downstream as compared to upstream over each sampling period. Chlorophyll a measured inside oyster bags was higher compared to the upstream position at Potter Pond, and results from the upstream, downstream, and within farm productivity experiment in both ponds suggest oyster byproducts may facilitate localized and seasonal phytoplankton production. Natural resource managers should consider that while oyster farms in coastal ponds can provide local water clarity through removal of phytoplankton, benefits may be site specific and seasonal. Full article

This review examines the status, challenges, and future trajectories of global mussel aquaculture within the blue food system. Despite steady production growth, mussels’ relative contribution to total bivalve output has significantly declined over recent decades due to disproportionate expansion of oyster, clam, and scallop sectors. A major geographical production shift has occurred, with Asia, spearheaded by China, emerging as the dominant region, supplanting traditional European producers while the Americas rapidly ascend. China’s overwhelming dominance in overall bivalve production starkly contrasts with its underdeveloped mussel sector, where growth lags behind other bivalves despite substantial absolute increases, reflecting a fundamental restructuring of species composition. The industry faces interconnected sustainability constraints: persistent vulnerabilities in spat supply stemming from environmental variability, hatchery limitations, and disease transmission risks; escalating environmental stressors including climate change impacts, harmful algal blooms, pollution, and pathogens; structural flaws in value chains characterized by fragmented production, market volatility, and underutilized byproducts; and governance challenges related to spatial access and licensing inefficiencies. This review advocates for a comprehensive strategy to boost the mussel aquaculture. These encompass advancing hatchery technology and genetic breeding programs, implementing ecosystem-based management such as multi-trophic systems and AI-enhanced environmental monitoring, restructuring value chains through producer cooperation and high value product diversification, and establishing science-based spatial planning frameworks with streamlined governance. Addressing these challenges holistically is critical to position mussel farming as a resilient pillar of sustainable blue food production capable of reconciling ecological integrity with economic viability and social equity. Full article

With the rapid development of oyster farming and the emergence of new varieties, the identification and evaluation of genetic resources have become fundamental to the effective utilization of oyster germplasm resources. To evaluate the impact of selective breeding on the germplasm of Crassostrea ariakensis, this study conducted genetic structure analysis on five successive generations including four generations selected (F1 to F4) focusing on both fast growth and high glycogen content and one base population (F0) based on partial mitochondrial cox1 and rrnL gene sequences. Results showed that the 649 bp cox1 and 488 bp rrnL sequences exhibited (A+T)-biased composition and showed positive AT skew. A total of 12 haplotypes were found for the cox1 sequences, while only three haplotypes were detected for the rrnL sequences. However, among the F1 to F4 populations, only three cox1 haplotypes and two rrnL haplotypes were observed. Based on cox1 sequences, the values of the haplotype diversity index, average number of nucleotide differences, and nucleotide diversity index all decreased progressively from F1 to F4, indicating a reduction in genetic variation due to selective breeding. All populations exhibited a low level of nucleotide diversity (<0.05). In addition, the intra-population genetic distance declined from F0 to F4, with significant genetic differentiation between F0 and F1, as well as between F0 and F4 (p < 0.05). In contrast, only the F0 and F4 population had multiple rrnL haplotypes, and no statistically significant genetic differentiations were observed based on rrnL fragments (p > 0.05). The AMOVA results showed that intra-population genetic variation exceeded inter-population variation, regardless of whether it was assessed using the cox1 gene or the rrnL gene, indicating that substantial genetic diversity persists within populations despite multiple generations of selection, and complete genetic differentiation across generations has not been achieved. These findings indicate that the selectively bred lines retain considerable genetic potential and can serve as a valuable resource for future breeding programs. Full article

This study examined the effects of hydrodynamic conditions on the growth performance and nutritional quality of Pacific oysters (Crassostrea gigas) in raceway flumes. Oysters were reared under three flow velocities—low (LV, 5 cm/s), medium (MV, 10 cm/s), and high (HV, 20 cm/s)—using three replicate flumes per treatment, each containing 100 individuals. Results indicated that while shell morphology remained unaffected by flow rate, MV significantly enhanced soft tissue weight and meat yield compared to LV. Physiologically, HV upregulated the activities of trypsin and amylase, with trypsin levels significantly exceeding those in LV. Furthermore, MV exhibited the highest crude protein and glycogen content. Notably, both MV and HV improved the accumulation of total and essential amino acids. Fatty acid profiles showed clear separation among treatments, primarily driven by C16:0, C18:0, C20:5n3, C22:1n9, and C20:2. Collectively, moderate flow velocity (10 cm/s, MV) resulted in a well-balanced enhancement of growth, biochemical composition, and nutritional value compared to low or high velocities, highlighting the potential value of controlled hydrodynamic conditions in oyster farming. Full article

Background: Clostridium perfringens is an infectious agent of concern in wild/farmed shellfish. Hence, this study assessed shellfish-borne Clostridium perfringens (ShbCp) prevalence. Methods: A total of 1469 ShbCp from 2336 shellfish were modelled using hierarchical generalized linear and 1000-permutation-based-mixed-effects, meta-regression models. Results: The overall ShbCp prevalence was 54.12% (19.73–84.99) with a 32.02% (14.52–56.64) toxigenic rate and a higher estimate in 2020–2025 (41.01%, 17.00–70.23) versus 1970–2019 (20.01%, 4.49–57.08). Culture media significantly affect ShbCp recovery, with cooked meat medium and thioglycollate medium registering higher estimates (77% and 25.15%, respectively) than selective agars (<7%). The molluscans had a higher ShbCp rate (60.68%) than crustaceans (1.57%) and cephalopods (0.14%); oysters (85.97%) than mussels (71.81%), clams (50.38%), slug/snails (48.23%), scallops (16.24%), crabs (11.91%), shrimps (1.05%), and squids (0.42%); and Crassostrea gigas (89.27%) versus Ruditapes philippinarum (45.92%) versus Mytilus galloprovincialis (30.14%). ShbCp differed significantly by nations but not by continent with Spain (87.79%) having the highest rate, then China (47.01%), Japan (43.91%), the USA (10.44%), and Greece (0.00%); South America (51.36%), then Asia (44.77%), Europe (21.97%), and North America (10.44%). Sample size, growth medium, nation, and shellfish class significantly explained 27.58%, 72.30%, 67.52%, and 28.51% ($R^2$) variance in ShbCp prevalence, respectively. Conclusions: The present study estimated a high ShbCp prevalence, suggesting a significant public health risk. It recommends that C. perfringens should be incorporated as a supplemental indicator into shellfish safety/shellfish water quality monitoring alongside traditional indicators. Also, geographical data gaps from Africa, Latin America, the Middle East, and Oceania underline the need for national and global monitoring attention and priority on C. perfringens in shellfish/shellfish beds. Full article

One of the most important activities in any oyster farm is the measurement of oyster size; this activity is time-consuming and conducted manually, generally using a caliper, which leads to high measurement variability. This paper proposes a methodology to count and obtain the length and width averages of a sample of oysters from an image, relying on artificial intelligence (AI), which refers to systems capable of learning and decision-making, and computer vision (CV), which enables the extraction of information from digital images. The proposed approach employs the DBScan clustering algorithm, an artificial neural network (ANN), and a random forest classifier to enable automatic oyster classification, counting, and size estimation from images. As a result of the proposed methodology, the speed in measuring the length and width of the oysters was 86.7 times faster than manual measurement. Regarding the counting, the process missed the total count of oysters in two of the ten images. These results demonstrate the feasibility of using the proposed methodology to measure oyster size and count in oyster farms. Full article

EHP causes hepatopancreatic microsporidiosis in shrimp, leading to growth retardation without notable mortality. To examine potential environmental carriers, farmed bivalves were collected near shrimp ponds in Korea and screened for EHP using nested PCR targeting the spore-wall-protein gene. DNA of EHP was mainly detected in gill and digestive tissues of oysters, scallops, mussels, and clams. Histopathology after 24 h immersion exposure confirmed spores within the intestinal epithelium of clams, indicating short-term invasion potential. These results suggest that bivalves can retain and mechanically transfer EHP spores through shared seawater between shrimp farms and surrounding areas. Considering the environmental persistence of EHP, continuous surveillance of local invertebrates is recommended to reduce the risk of EHP introduction and further spread in aquaculture systems. Full article

Environmental physicochemical factors and microorganisms play critical roles in the health of oysters. However, the impact of high-density oyster farming—a highly efficient filter-feeding bivalve system—on environmental conditions and microbial community structure and function remains poorly understood. This study conducted four-season monitoring of the water and sediment parameters in a semi-enclosed bay commercial oyster aquaculture (OA) system and a control area (CT), coupled with 16S rRNA amplicon sequencing of the environmental microbiota. Oyster aquaculture caused negligible disruption to water column parameters but significantly increased the concentrations of total organic carbon (TOC, annual mean OA vs. CT:1.15% vs. 0.56%), sulfides (annual mean OA vs. CT:67.72 vs. 24.99 mg·kg⁻¹), and heavy metals (Cd, Pb, Cu, Zn, and Cr) in the sediment. α-diversity (Shannon and Chao indices) exhibited minimal overall perturbation, with significant inter-regional differences observed only in winter for both water and sediment. The bacterial community structure of the water column was significantly altered only in winter, whereas sediment communities showed structural shifts in spring, summer, and autumn. Water microbiota were primarily influenced by turbidity, dissolved oxygen, salinity, the Si/N ratio, and silicates. Sediment microbiota were correlated with Pb, Cu, Zn, TOC, Cr, and sediment particle size. Water bacterial functions displayed only four significantly divergent biogeochemical processes annually (sulfur compound respiration; OA vs. CT). In contrast, sediment bacteria exhibited 29 significantly disrupted functions annually, with the greatest seasonal divergence in winter (11/67 functions). Spring, summer, and autumn sediment functions showed distinct patterns. Understanding these environmental–microbial interactions is essential for sustainable oyster aquaculture and ecological optimization. Full article

Sex determination is a fundamental biological process governing animal reproduction. Although substantial progress has been made in elucidating its genetic basis, the genetic architecture underlying complex sex determination systems remains poorly understood. In this study, we identify sex-associated insertion–deletion (indel) variants, screen candidate genes, and compare sex-associated variation across populations with different genetic backgrounds in the Fujian oyster (Magallana angulata). Based on whole-genome resequencing data of a culture strain (designated FL), a total of 299,774 high-quality indels were identified. By integrating genome-wide association analysis (GWAS), fixation index (F_ST) analysis, and sex-biased genotype frequency comparisons, 77 overlapping sex-associated indels were identified, predominantly clustered within a 1.8 Mb (8.3–10.1 Mb) region on chromosome 9. Principal component analysis (PCA) based on the sex-associated markers and their subsets consistently separated male and female individuals in the FL strain. For two representative sex-associated indels, PCR-based genotyping methods were developed and validated. Functional annotation identified putative candidate genes for sex determination, including PKD1L1, 5-HTRL, SCP, and CCKRa. Comparative analysis of variants within PKD1L1 across wild, farmed, and selectively bred populations revealed a progressive enrichment of male-linked alleles in domesticated and selectively bred groups, particularly in male individuals. This study provides direct evidence that sex in the Fujian oyster is genetically determined and reveals that domestication and artificial selection may drive the emergence of major sex-determining loci, offering important insights into the genetic basis of sex determination in the Fujian oyster, and establishing a theoretical and practical foundation for molecular marker-assisted breeding of monosex lines for this species. Full article

This study assessed the presence, abundance, and characteristics of microplastics (MPs) in farmed Pacific oysters (Crassostrea gigas) and evaluated the efficacy of depuration in reducing MPs under laboratory-controlled and commercial conditions. Oysters cultivated in the Lima estuary (NW Portugal) were sampled in autumn and winter, along with adjacent surface water and sediment, to investigate potential contamination sources. MP concentrations in oysters varied temporally, with higher levels in October 2023 (0.48 ± 0.34 MPs g⁻¹ ww) than in February 2024 (0.09 ± 0.07 MPs g⁻¹ ww), while the environmental levels remained stable across dates. All MPs were fibres, predominantly transparent, followed by blue and black. Fourier-Transform Infrared Spectroscopy (FTIR) confirmed cellulose and polyethylene terephthalate (PET) as dominant polymers in oysters and environmental samples. No clear correlation was found between MPs in oysters and surrounding compartments. Laboratory depuration reduced MPs by 78% within 48 h, highlighting its potential as a mitigation strategy. However, depuration was less effective under commercial conditions, possibly due to lower initial contamination levels. These findings suggest that oysters may act as a vector for human exposure to MPs via seafood consumption. While depuration shows promise in reducing contamination, further research is needed to optimise commercial protocols and enhance the safety of aquaculture products. Full article

As the global demand for eco-friendly food ingredients grows, marine macroalgae emerge as a valuable resource for multiple applications using a circular bioeconomy approach. In this study, green macroalgae Ulva flexuosa, naturally accumulated in aquaculture ponds as a residual biomass (by-product) of shrimp and oyster farming, were investigated regarding their bioactivity, chemical composition, and antioxidant properties. The use of aquaculture by-products as raw materials not only reduces waste accumulation but also makes better use of natural resources and adds value to underutilized biomass, contributing to sustainable production systems. For this, a comprehensive approach including the evaluation of its composition and environmentally friendly extraction of bioactive compounds was conducted and discussed. Green macroalgae exhibited high fiber (37.63% dry weight, DW) and mineral (30.45% DW) contents. Among the identified compounds, palmitic acid and linoleic acid (ω-6) were identified in the highest concentrations. Pigment analysis revealed a high concentration of chlorophylls (73.95 mg/g) and carotenoids (17.75 mg/g). To evaluate the bioactivity of Ulva flexuosa, ultrasound-assisted solid–liquid extraction was performed using water, ethanol, and methanol. Methanolic extracts showed the highest flavonoid content (59.33 mg QE/100 g), while aqueous extracts had the highest total phenolic content (41.50 mg GAE/100 g). Ethanolic and methanolic extracts had the most potent DPPH scavenging activity, whereas aqueous and ethanolic extracts performed best at the ABTS assay. Overall, we show the upcycling of Ulva flexuosa, an underexplored aquaculture by-product, as a sustainable and sensible strategy for multiple value-added applications. Full article

Food security and environmental quality related to food production are global issues that need urgent solutions. Proteins are crucial for diets, and demand is growing for innovative and more environmentally sustainable sources of protein, like vegetables, microorganisms, and insects, and lab-grown food that can meet nutritional and environmental goals. This study analyzes a time series to assess the sustainability of different protein sources by evaluating their effects on emissions of greenhouse gases and the use of agricultural land while accounting for the carbon sink potential across the supply chain. The study also explores future trends in global protein sources, emphasizing shellfish as a key to achieving food security from both nutritional and environmental perspectives. By reviewing terrestrial livestock, farmed seafood, vegetal proteins, and alternative sources like insects and cultured cells, the study assesses sustainability, food security potential, and challenges from nutritional, environmental, and consumer viewpoints. We conclude that shellfish aquaculture, particularly oysters, mussels, clams, and scallops, has significant potential in enhancing food security, fostering sustainable protein consumption, reducing land use, and contributing to climate change mitigation by sequestering significant amounts of atmospheric carbon. Full article

Traditional hazard identification techniques for Vibrio parahaemolyticus often neglect the distinction between viable and nonviable bacteria in aquatic products, leading to overestimated disease risks and uncertainties in risk assessments. To address this limitation, we developed an automated PMA pretreatment instrument that integrates dark incubation and photo-crosslinking into a unified workflow, allowing customizable parameters such as incubation time, light exposure duration, and mixing speed while maintaining stable temperatures (<±1 °C fluctuation) to preserve bacterial DNA integrity. Leveraging this system, a duplex qPCR assay was optimized for simultaneous quantitative detection of V. parahaemolyticus and V. cholerae in aquatic products and environmental samples. The assay demonstrated robust performance with 90–110% amplification efficiencies across diverse matrices, achieving low limits of detection (LODs) of 10¹–10² CFU/mL in shrimp farming environment water and 10²–10³ CFU/g in shrimp (Litopenaeus vannamei) and oyster (Crassostrea gigas). Notably, it effectively discriminated viable bacteria from 10⁶ CFU/mL(g) nonviable cells and showed strong correlation with ISO-standard methods in real-world sample validation. This integrated platform offers a rapid, automated solution for accurate viable bacterial quantification, with significant implications for food safety, pathogen surveillance, and risk management in aquatic industries. Full article