Search Results (1,744)

This study experimentally investigated the influence of vegetation integrity, vertical architecture and morphology, flexibility, and patch length on tsunami bore attenuation and structural force reduction, using Pandanus odoratissimus (screwpine) as a model species. A key aspect of the experimental design was the simulation of vegetation breakage, defined as occurring when the tsunami water depth exceeded 80% of tree height, a critical threshold for structural failure. Results showed that vegetation under non-breaking conditions significantly attenuated water levels and hydrodynamic forces, with maximum tsunami force reductions of up to 70% for rigid and 66.5% for flexible vegetation, particularly when the patch extended further inland (i.e., longer vegetation length). In contrast, vegetation breakage led to a notable decline in protective performance, with horizontal and uplift force reductions dropping between 10.1–45.2% and 10.7–16.7%, respectively, in short patches. Flexible vegetation exhibited the greatest loss of effectiveness due to structural collapse. However, longer vegetation patches played a compensatory role, maintaining higher force reduction even under breaking conditions. Notably, broken P. odoratissimus still contributes to energy dissipation through its intact dense aerial roots that resist flow near the bed. These findings highlight the importance of maintaining vegetation integrity for effective tsunami mitigation, while also recognizing that partially damaged vegetation retains some protective function, particularly when configured in extended patches. Full article

PYR/PYL (pyrroloquinoline quinone resistance/PYR1-like) are receptors for abscisic acid (ABA) in plants and play a crucial role in responses to abiotic stress. In this study, we identified 63 members of the StPYL gene family at the tetraploid whole-genome level in potatoes. We analyzed the physicochemical properties of these 63 StPYLs and constructed a phylogenetic tree using Arabidopsis thaliana and potato (Solanum tuberosum L.) cultivar ‘DM’ as the reference. By examining gene structure, conserved protein motifs, and collinearity, we found that StPYLs are highly conserved throughout evolution. The gene expression heat map under salt stress revealed that 57 StPYL genes are involved in the salt stress response. Among them, the expression level of StPYL9a-like changed significantly under salt stress. Through genetic transformation, we observed that overexpression of StPYL9a-like enhanced the growth and survival of potato plants under salt stress compared to the wild type. The contents of proline (Pro), superoxide dismutase (SOD), and chlorophyll in the leaves of overexpressing plants increased, while malondialdehyde (MDA) levels decreased. This suggests that StPYL9a-like positively regulates salt tolerance by affecting antioxidant enzyme activity and osmotic adjustment substances in potatoes. Subcellular localization demonstrated that StPYL9a-like is localized in the nucleus. This study provides a reference for the functional research of PYLs in potatoes, offers a basis for screening potato genes related to salt stress, and lays a foundation for developing salt-tolerant potato varieties. Full article

Pine wilt disease (PWD) is a serious forest disease caused by pine wood nematode (PWN). To examine the relationship between coniferous endophytes and PWD resistance, this study investigated endophytic bacterial and fungal communities in five conifer species: two Japanese black pine populations (Pinus thunbergii from Qingdao University, PQ, and Fushan Forest Park, PF), Chinese arborvitae (Platycladus orientalis, PO), cedar (Cedrus deodara, CD), and Masson pine (Pinus massoniana, PM). Results showed a strong correlation between endophytic microbial diversity and PWD resistance. PO with high PWD resistance hosted the most unique bacterial species, while PM with low PWD resistance had the fewest unique bacteria and significantly lower ACE and Shannon indices. At the bacterial genus level, dominant genera in resistant conifers often showed high nematocidal activity, whereas those in susceptible plants boosted nematode reproduction. PQ featured the unique dominant genus Pantoea, and PO’s unique Acinetobacter and the shared genus Bacillus (with CD) both displayed high toxicity to PWNs. In contrast, PF’s Pseudomonas and PM’s Stenotrophomonas significantly promoted nematode reproduction. Fungal community analysis revealed that the unique endophytic fungi in PQ are more abundant than those in PF, and the Shannon index of its endophytic fungi is comparable to that of CD and significantly higher than that of PF. PF’s dominant fungal genus Pestalotiopsis might facilitate nematode invasion, and its fungal Shannon index is significantly lower than PQ’s. Eight bacterial strains were isolated from these five conifer plants, with six highly nematocidal strains originating from PQ, CD, and PO. This study offers evidence that endophytic microbial communities critically influence PWD resistance, offering a microbial basis for developing resistant conifer cultivars through microbiome engineering. Full article

Epithelial ovarian cancer (EOC) is the most lethal gynecologic malignancy, often diagnosed at an advanced stage due to its asymptomatic progression. The high recurrence rate and development of platinum-based chemotherapy resistance contribute to its poor prognosis. Despite advancements in molecular profiling, predictive biomarkers for chemotherapy response and recurrence risk remain limited. In this study, we developed OvarianTag™, a biomarker panel integrating apoptosis and necroptosis pathways, to predict chemotherapy benefit and disease progression in EOC patients. This observational study was conducted in two phases. In the first phase, 45 patients were recruited, and RNA was extracted from fresh ovarian tissues (normal, benign, and malignant). qRT-PCR was performed to assess the relative expression of genes involved in apoptosis and necroptosis-regulated cell death pathways. Machine learning algorithms were applied to identify the relevant prognostic markers, leading to the development of OvarianTag™. In the second phase, 55 additional EOC patients were included, and their formalin-fixed, paraffin-embedded (FFPE) tumor samples were analyzed using qRT-PCR. The classifier algorithm incorporated hierarchical clustering to stratify patients based on gene expression profiles. Significant differences in TNFRSF10C/TRAIL-R3, TNFRSF10B/TRAIL-R2, and CASP8 expression levels were observed between patient groups. CASP8 downregulation was strongly correlated with platinum resistance and a poor prognosis. Decision tree models achieved 83.3% accuracy in predicting platinum response and 79.2% accuracy in recurrence risk stratification. The OvarianTag™ classifier demonstrated high sensitivity and specificity in identifying high-risk patients, supporting its potential as a prognostic tool. The OvarianTag™ panel provides a novel approach for risk stratification in EOC, integrating apoptosis and necroptosis pathways to refine chemotherapy response prediction and recurrence risk assessment. This molecular assay has the potential to guide personalized treatment strategies, enhancing clinical decision-making and improving patient outcomes. Further validation in independent cohorts is warranted to establish its clinical utility. Full article

The AP2/ERF transcription factor family plays pivotal roles in plant growth, stress responses, and defense mechanisms, yet its diversity in camphor trees remains underexplored. This study identified 154 AP2/ERF genes in the Camphora officinarum genome, with over 80% belonging to the ERF subfamily, a distribution consistent with other angiosperms. Synteny analysis revealed that tandem and segmental duplications were key drivers of family expansion, suggesting adaptive diversification under ecological pressures. Structural analysis showed that the majority of ERF/RAV subfamily genes possess a single-exon structure, whereas AP2 subfamily genes display muti-exon structures, indicating divergent evolutionary trajectories and potential functional versatility via alternative splicing. Promoter analyses detected numerous hormone- and stress-responsive elements, linking these genes to abscisic acid, auxin, gibberellin signaling, and pathogen defense. Further expression profiling during stem development showed that approximately 60% of CoAP2/ERF genes were constitutively expressed across 17 expression trends, suggesting roles in basal development and stage-specific processes (e.g., lignification). Under Epicoccum poaceicola infection, 23 CoAP2/ERF genes were differentially expressed. Among them, upregulated ERF homologs related to RAP2.2/2.3 suggested roles in hypoxia and antimicrobial responses, while downregulation of ERF5 homologs indicated a growth–defense trade-off, whereby developmental processes are suppressed to prioritize pathogen resistance. Overall, this study deciphers the genomic architecture and structural diversity of CoAP2/ERF genes, along with expression dynamics of these genes in development and biotic stress adaptation of camphor trees. These findings provide critical insights into transcriptional regulation of development and stress responses in camphor trees and establish a theoretical basis for molecular breeding and biotechnological strategies aimed at improving stress resilience in woody plants. Full article

Hippophae neurocarpa S. W. Liu & T. N. Ho exhibits established medicinal characteristics, valuable dietary attributes, and remarkable adaptability, displaying strong resistance to cold, drought, and to acidic and alkaline soils. These traits and others make it a valuable species for soil erosion control and a distinctive economic forest tree in western China. However, research on its geographic distribution remains limited. To address this gap, we employed the MaxEnt model to map its current distribution and to predict the future geographic distribution of suitable habitats for this species under SSP1-2.6, SSP2-4.5, and SSP5-8.5 climate scenarios. Collectively, these data suggest that the species’ current and future suitable habitats are predominantly concentrated at the junction of the northeastern Qinghai-Tibet Plateau and the Loess Plateau. Under present climatic conditions, highly suitable habitats are primarily located in the northeastern Qinghai-Tibet Plateau, with smaller patches in the Hengduan and Himalaya mountains. The AUC value of this model reached 0.954; projections under three future emission scenarios indicate an overall expansion trend in suitable habitat area. Notably, by the 2070s under the SSP2-4.5 scenario, the total suitable habitat area is projected to increase by 11.64%—the highest among all scenarios. Additionally, climate change is expected to drive a slight northward shift in the species’ distribution center toward higher latitudes. Key environmental factors influencing its projected distribution include elevation (elev), temperature seasonality (bio04), mean temperature of the coldest quarter (bio11), and precipitation of the warmest quarter (bio18). These insights are critical for conserving H. neurocarpa’s genetic resources and guiding future biodiversity conservation strategies. Full article

The research aimed to study the genome of Cryptococcus neoformans isolated from bird excreta. Thirteen isolates were cultured, colony stained, and underwent biochemical testing confirmation by nested polymerase chain reaction using ITS1-ITS4 and CN4-CN5 primers, respectively. Antifungal susceptibility testing and whole-genomic sequencing were analyzed. The results determined that all isolates were susceptible to amphotericin B (100%), fluconazole, and itraconazole (92.3%). One isolate (DOP3) showed resistance to fluconazole and itraconazole (MIC >64 and >8 µg/mL, respectively). A phylogenetic tree showed the identity of C. neoformans (serotype A). The genome of resistant (DOP3) and non-resistant isolates (DOP3.1) had 14 chromosomes. DOP3 consisted of 38 candidate antifungal resistance genes, which were the most active against azoles (14). The annotated genes in the azole group mostly were in the ATP-binding cassette transporter transmembrane superfamily. Resistance genes against FCZ were in the transcription factors (HAP2, HAP5), zinc finger (NRG1), cytochrome P450 (ERG11), and Myb-like DNA-binding domain (REB1). The most frequent resistance genes against ITZ were cytochrome P450 (ERG5 and ERG11) and a transcription factor (HAP5). DOP3.1 also consisted of 26 candidate resistance genes against azoles. Resistance genes against the azole group belong to the ABC transporter transmembrane superfamily. Resistance genes against FCZ belong to cytochrome P450 (ERG11), the zinc finger (NRG1), and the CCAAT binding transcription factor (HAP2). Resistance genes belonging to cytochrome P450 (ERG5) were found against ITZ. This research provides the first report of C. neoformans (serotype A) in zebra dove excreta, drug susceptibility to a resistant strain, and identification of resistance genes. Farm sanitation should be strictly applied, and immunocompetent people should avoid contact with zebra dove excreta. Full article

Intra-specific variation in functional traits and their inter-relationships reflect how plants allocate resources, adapt, and evolve in response to environmental changes. This study investigated eight functional traits—leaf area (LA), specific leaf area (SLA), leaf dry matter content (LDMC), chlorophyll content (CHL), leaf nitrogen content (LNC), leaf phosphorus content (LPC), twig tissue density (TTD), and wood density (WD)—in Cunninghamia lanceolata plantations of three stand ages (15, 30, and 50 years), using a space-for-time substitution approach. We examined differences in trait values, intra-specific variation, and trait correlations across forest ages and diameter classes. The results showed that (1) Functional traits exhibited varying degrees of intra-specific variation, with LA having the highest coefficient of variation (21.66%) and LPC is lowest (9.31%). (2) Forest age had a stronger influence on trait variation than diameter class, with all traits differing significantly across ages, while only WD varied significantly among diameter classes. (3) PC1 (25.5%) and PC2 (19.4%) together explained approximately 44.9% of the total variation, with PC1 primarily reflecting functional trait changes driven by forest age. PCA results showed that LA and CHL tended to exhibit higher values in young forests, whereas SLA, LDMC, LPC, and LNC had relatively higher values in mature forests. This pattern suggests a shift in functional trait expression from resource acquisition to resource conservation strategies with increasing forest age. (4) Significant positive correlations between LNC and LPC, and negative correlations between SLA and LDMC, were observed in most groups, except in large-diameter trees at the over-mature stage. C. lanceolata adjusts trait combinations to enhance fitness across developmental stages. Juvenile trees adopt traits favoring efficient light and nutrient use to support rapid growth and competition. Middle-aged trees prioritize balanced water and nutrient use to maintain productivity and resist disturbances. Mature trees focus on sustained resource use and offspring protection to support ecosystem stability and regeneration. These findings reveal age-specific adaptive strategies and provide insights into the coordination and trade-offs among traits in response to environmental conditions. Full article

Constrained by site conditions and water resources, pear tree cultivation faces increasing drought stress. Paecilomyces variotii extract (PVE), a novel biostimulant extracted from wild sea buckthorn root-isolated strains and containing chitin, humic/fulvic acids, and beneficial microbes, has gained attention due to its high activity and efficacy in alleviating plant stresses (e.g., drought). In this study, Pyrus pyrifolia ‘Qiu Yue’ was used as the experimental material, and pot experiments were conducted to examine the drought-mitigating effects of different PVE concentrations. Drought stress was achieved by maintaining soil water content at 35–45% of water holding capacity for 45 days under natural evaporation conditions in rain shelters. The growth status of pear trees, soil enzyme activity, and metabolite levels were analyzed. The results showed that the application of 5 ng/mL PVE promoted pear tree growth, enhanced leaf antioxidant enzyme activity, and improved photosynthetic capacity and soil enzyme activity. Under normal water conditions, the shoot growth length, plant height, stem diameter, and root system activity of the 5 ng/mL PVE group were 31.91%, 12.05%, 3.54%, and 10.94% higher than those of the control group, respectively. Under drought stress, these values increased by 25.12%, 8.87%, 12.21%, and 16.98%, respectively. The addition of 5 ng/mL PVE facilitates trehalose release and upregulates starch-sucrose, glycerophospholipid, and galactose metabolic pathways, thereby potentiating drought stress tolerance in pear trees. However, at 20 ng/mL, reductions were observed in pear tree growth indicators, leaf antioxidant enzyme activity, soil enzyme activity, and trehalose content in root exudates compared to the 5 ng/mL PVE treatment. Overall, 5 ng/mL PVE effectively promotes pear tree growth and enhances drought resistance, making it suitable for broader use in pear cultivation practices. Full article

Aluminum (Al) toxicity in acidic soils severely limits the productivity of Chinese fir (Cunninghamia lanceolata) plantations. Despite being a crucial timber species in southern China, the regulatory mechanisms underlying phenolic accumulation and Al tolerance pathways under Al stress in Chinese fir remain unidentified. In this study, 5-month-old Chinese fir seedlings were treated with an exogenous phenolic synthesis inhibitor (AIP) and precursor (MJ) to establish the following groups: CK, AIP, MJ, Al, Al+AIP, and Al+MJ. Physiological and biochemical indicator analyses, transcriptome analysis, and protein interaction network predictions were conducted. The findings revealed that phenolic compounds enhance Al tolerance in Chinese fir through two mechanisms: (1) regulation of active oxygen homeostasis (elevating SOD and POD activities, promoting AsA and GSH accumulation, and augmenting total antioxidant capacity); and (2) modulation of cell wall characteristics (increasing pectin content and pectinase activity, and facilitating Al sequestration in the cell wall). Moreover, MJ was found to synergistically enhance these processes, while AIP impeded them. Genes associated with antioxidant enzymes, secondary metabolite synthesis, and cell wall modification were implicated in the regulatory mechanisms. This study provides a theoretical foundation for elucidating the adaptation of Chinese fir to Al toxicity in acidic soil environments, offers insights for enhancing Chinese fir productivity in acidic soils, and presents a novel target for breeding trees with stress resistance. Full article

Xylella fastidiosa (Xf) is a Gram-negative bacterium responsible for severe diseases in several commercially significant crops, including olive, grapevine, citrus and almond. Its management is particularly challenging due to its transmission via widespread vector insects, its ability to form biofilms, its high genetic diversity and, sometimes, latent symptoms. Current control strategies focus on integrated and preventive approaches, including the use of resistant varieties, agronomic practices, and vector control through chemical and biological methods. Direct control of the bacterium has always been a complex challenge that includes strategies to limit vector presence and activity in the field; however, several compounds have recently been evaluated that are able to inhibit biofilm formation and Xf growth. This review provides an up-to-date summary of studies investigating the efficacy of various treatments based on organic compounds, synthetic molecules and salt- or metal-based formulations. By evaluating the results of in vitro and in vivo experiments, the most promising solutions were identified that address the main challenges and limitations of chemical control strategies. These include N-acetylcysteine and zinc- and copper-based formulations, which are effective and potentially transferable to the field for crops such as citrus and olive trees. Antimicrobial peptides and nanoparticles, on the other hand, have demonstrated high efficacy in vitro, although further studies directly in the field are required. The evidence emerging from the analyzed studies offer insights to guide future research towards more effective and sustainable management approaches to mitigate the spread and impact of Xf. Full article

Drought stress poses a significant threat to tree growth, making the development of drought-resistant species essential for ecological restoration. WRKY transcription factors are critical regulators of plant drought responses; however, the role of WRKY22 in the woody species Populus ussuriensis K. remains unclear. In this study, the PuWRKY22 gene was cloned from P. ussuriensis via homologous cloning and was found to be highly expressed in leaves and responsive to abscisic acid (ABA) signaling. Subcellular localization confirmed that PuWRKY22 is a nuclear protein. Using fluorescein enzyme complementation assays, PuWRKY22 was shown to bind specifically to W-box cis-elements, indicating its function as a transcriptional regulator. Under ABA and osmotic (sorbitol) stress, the seed germination rate, root growth, and biomass of tobacco and Populus davidiana × Populus bolleana strains overexpressing PuWRKY22 were significantly increased. Additionally, these overexpressed strains exhibited a reduction in reactive oxygen species (ROS) accumulation and a decrease in membrane lipid peroxidation. Transcriptomic analyses revealed that PuWRKY22 activates expression of the ABA receptor gene Ptr.PYL4 (Potri.006G104100.v4.1), which regulates stomatal closure to minimize water loss. Consistent with this, stomatal observations and photosynthetic measurements demonstrated that PuWRKY22 enhances drought tolerance by protecting photosystem II and preserving chlorophyll content. Collectively, this study elucidates the molecular mechanism by which PuWRKY22 enhances drought resistance in woody plants through ABA signaling, providing a foundation for breeding drought-tolerant forest species. Full article

Urban green spaces are important nature-based solutions to mitigate climate change. While the distribution of green spaces within cities is well documented, few studies assess whether inequities in green space quantity (i.e., percent cover) are mirrored by inequities in green space quality (i.e., vegetation health or sensitivity to stressors). Green space quality is important to measure alongside green space quantity because vegetation that is healthier and less sensitive to stressors such as climatic fluctuations sustain critical ecosystem services through stressful environmental conditions, especially as the climate changes. We use a 40-year remote sensing dataset to examine the spatial patterns and underlying drivers of vegetation sensitivity to short-term (monthly) climate fluctuations in Chicago. Our results show that although vegetation cover was not equitably distributed between racially and ethnically segregated census tracts, socio-demographic composition was not a key driver of spatial variation in short-term vegetation sensitivity to climate. Instead, we found that vegetation growth form was a strong predictor of differences in vegetation sensitivity among communities. At the census tract level, higher herbaceous/shrub cover was associated with increased sensitivity to climate, while higher tree cover was associated with decreased sensitivity. These results suggest that urban green spaces comprising trees will be less sensitive (i.e., more resistant) to short-term climate fluctuations than those comprising predominately herbaceous or shrub cover. Our findings highlight that urban green space quality can vary spatially within cities; however, more work is needed to understand how the drivers of vegetation sensitivity vary among cities, especially those experiencing different climatic regimes. This work is key to planning and planting high-quality, climate change-resilient and equitable urban green spaces. Full article

Aerospace engines and hypersonic vehicles, among other high-temperature components, often operate in environments characterized by temperatures exceeding 1000 °C and high-speed airflow impacts, resulting in severe thermal erosion conditions. Coaxial thermocouples (CTs), with their unique self-eroding characteristic, are particularly well suited for use in such extreme environments. However, fabricating high-temperature electrical insulation layers for coaxial thermocouples remains challenging. Inspired by the self-healing mechanism of pine trees, we designed a composite electrical insulation layer with a similar self-healing function. This composite layer exhibits excellent high-temperature insulation properties (insulation resistance of 14.5 kΩ at 1200 °C). Applied as the insulation layer in K-type coaxial thermocouples via dip-coating, the thermocouples were tested for temperature and heat flux. Temperature tests showed an accuracy of 1.72% in the range of 200–1200 °C, a drift rate better than 0.474%/h at 1200 °C, and hysteresis better than 0.246%. The temperature response time was 1.08 ms. Heat flux tests demonstrated a measurable range of 0–41.32 MW/m² with an accuracy better than 6.511% and a heat flux response time of 7.6 ms. In simulated extreme environments, the K-type coaxial thermocouple withstood 70 s of 900 °C flame impact and 50 cycles of high-power laser thermal shock. Full article

Fraxinus spp. is one of the most important salt-alkali resistant tree species in the Yellow River region of China. However, the limited number of superior families and individuals, as well as the lack of a well-established parent selection system for hybrid breeding, have seriously constrained the improvement of seed orchards and the construction of advanced breeding populations. To address these issues, this study investigated 22 full-sib families of Fraxinus spp., using SSR molecular markers to calculate the genetic distance (GD) between parents. Combined with combining ability analysis, the study aimed to predict heterosis in offspring growth traits and select superior families and individuals through multi-trait comprehensive evaluation. The results showed the following: (1) Tree height (TH), diameter at breast height (DBH), and volume index (VI) exhibited extremely significant differences among families, indicating rich variation and strong selection potential. (2) The phenotypic and genotypic coefficients of variation for TH, DBH, and VI ranged from 4.34% to 16.04% and 5.10% to 17.73%, respectively. Family heritability was relatively high, ranging from 0.724 to 0.818, suggesting that growth is under strong genetic control. (3) The observed and expected heterozygosity of 15 parents were 0.557 and 0.410, respectively, indicating a moderate level of heterozygosity. Nei’s genetic diversity index and Shannon’s information index were 0.488 and 0.670, respectively, indicating relatively high genetic diversity. GD between parents ranged from 0.155 to 0.723. (4) Correlation analysis revealed significant or highly significant positive correlations between family heterosis and growth traits, combining ability, and GD, with specific combining ability (SCA) showing the strongest predictive power. Regression analysis further demonstrated significant linear correlations between GD and heterosis of TH and VI, and between SCA and heterosis of TH, DBH, and VI, establishing a GD threshold (≤0.723) and SCA-based co-selection strategy. In addition, four superior Fraxinus families and 11 elite individuals were selected. Their genetic gains for TH, DBH, and VI reached 2.28%, 3.30%, and 9.96% (family selection), and 1.98%, 2.11%, and 4.00% (individual selection), respectively. By integrating genetic distance (GD) and quantitative genetic combining ability (SCA), this study established a quantifiable prediction model and proposed the “GD–SCA dual-index parent selection method”, offering a new paradigm for genetic improvement in tree breeding. Full article