Search Results (1,030)

Rice (Oryza sativa L.) is a salt-sensitive crop, where even moderate soil salinity (electrical conductivity ≥ 3.5 dS/m) can cause significant yield reduction. During the seedling stage, the underdeveloped root system has limited capacity for salt uptake and translocation, making root system architecture (RSA) a crucial trait for enhancing salinity tolerance. In this study, we used 165 individuals from the 3K Rice Genome Project to comprehensively measure multidimensional root morphological traits at the early seedling stage under salt stress, thereby overcoming the limitations of conventional methods that mainly rely on root length and biomass. We identified 78 quantitative trait nucleotides (QTNs) associated with eight root morphological traits through genome-wide association studies (GWAS) of 3VmrMLM. Among these, 12 QTNs co-localized within genomic regions of previously cloned salt tolerance-related genes. Additionally, six salt-tolerant lines were selected based on significantly increased root volume (RV) and surface area (SA), suggesting that their adaptive mechanism under salinity involves optimized spatial root distribution rather than radial thickening. Our findings show that high-resolution root scanning-based phenotyping provides a reliable platform for screening and breeding salt-tolerant rice varieties, offering valuable indicators for assessing seedling-stage salt tolerance. Full article

To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching 63.88% against the pathogenic fungus. Based on morphological characteristics and multigene phylogenetic analysis (ITS, β-tubulin, and tef1-α), DJW5-2-1 was identified as Diaporthe phoenicicola (Traverso & Spessa) Udayanga, Crous & K.D. Hyde. Dual culture assays further confirmed its broad-spectrum antifungal activity, with inhibition rates ranging from 39.15% to 72.54% against various phytopathogenic fungi. Biochemical analyses revealed that DJW5-2-1 secretes multiple extracellular enzymes and exhibits plant growth-promoting traits. In both in vitro and potted plant efficacy assays, the biocontrol efficacy of strain DJW5-2-1 against RBS was 49.67% and 50.61%, respectively, indicating that strain DJW5-2-1 exhibits a certain level of control efficacy against RBS. Through pot experiments, we found that strain DJW5-2-1 could promote the growth of rhododendron seedlings and significantly increase growth indicators. Among these indicators, the growth-promoting rates of plant height and stem diameter were 15.27% and 41.27%, respectively. Moreover, DJW5-2-1 contributed to improved host resistance by elevating the activities of key defense-related enzymes, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and polyphenol oxidase (PPO). Taken together, these findings suggest that strain DJW5-2-1 represents a promising microbial agent for the integrated control of RBS and the development of fungal-based biofertilizers. Further investigation is warranted to assess its performance under field conditions and elucidate its underlying mechanisms of action. Full article

Salt stress is a significant environmental factor that inhibits maize growth and development, severely affecting yield formation. Interestingly, nanomaterials, particularly ZnONPs, can enhance resistance to various stresses and support healthy crop growth. However, the effects of ZnONPs on maize under salt stress remain unclear. This study investigates the effect of foliar and seed exposure to zinc oxide nanoparticles (ZnONPs) on reducing NaCl-induced salt stress in two maize inbred lines (NKY298-1 and NKY211). Over a period of seven days, under 120 mM NaCl, we measured growth, reactive oxygen species (ROS), malondialdehyde (MDA), membrane stability index (MSI), water status (relative water content, RWC), photosynthetic pigments and parameters, selected photosynthetic enzymes, and antioxidant enzyme activities. Then, we propose four composite indices, including stress improvement index (SII), alleviation capacity index (ACI), comprehensive improvement effects (CIE), and comprehensive alleviation capacity (CAC), to rank the effectiveness of ZnONP doses. The findings suggested that 50–100 μM ZnONPs significantly mitigate salt damage, with optimal doses varying by genotype (50 μM for NKY211 and 100 μM for NKY298-1). Notably, the study’s originality lies in its side-by-side composite scoring across 26 traits in two maize genotypes’ seedlings. In conclusion, the findings will provide a new idea for research on the molecular mechanism by which exogenous ZnONPs application improves the salt tolerance of maize seedlings. Full article

Salinity is one of the major problems limiting plant growth, development, survival, yield, and quality. Climate change and increasing salinity levels force a concentration on sustainable production systems. Therefore, this study aimed to determine the effects of different doses of gibberellic acid (GA₃) (0, 150, and 300 mg/L) and salicylic acid (SA) (0, 0.25, and 0.50 mM) priming on some morphological and antioxidant enzyme activities of silage maize (Zea mays L.) seedlings exposed to salinity stress. Four different NaCl (0, 75, 150, and 225 mM) concentrations as salt stress and three different doses of both SA and GA₃ were investigated. The data obtained were subjected to analysis of variance according to a randomized complete block design using a factorial experimental design with four replications per treatment in 3 L pots. The results showed that GA₃ and SA priming had statistically significant effects on all investigated traits under different salt concentrations (except water content). Findings revealed that shoot, root, and leaf development, as well as antioxidant enzymes, were suppressed by salinity stress. The silage maize plant was statistically significantly affected starting from the lowest dose of 75 mM, depending on salt concentrations. Increasing salt concentrations negatively affected above-ground and below-ground parameters. However, SA and GA₃ treatments had positive impacts on all examined traits. SA and GA₃ priming treatments emerged as important strategies supporting root and shoot growth under saline conditions, thereby strengthening plant adaptation. The best results were obtained in groups exposed to 75 mM salt stress, where 300 mg/L GA3 was applied, and in groups without salt stress, where the same GA3 dose was applied. It was concluded that GA₃ priming treatments, in particular, were more effective than SA treatments, alleviating salt stress and positively contributing to plant development. Full article

The coupling of partial root-zone drying (PRD) with nitrogen forms exerts an interactive “water-promoted fertilization” effect, which enhances rice (Oryza sativa L.) growth and development, improves water use efficiency (WUE), mediates the expression of aquaporins (AQPs), and alters root water conductivity. In this study, gene cloning and CRISPR-Cas9 technologies were employed to construct overexpression and knockout vectors of the OsPIP2;1 gene, which were then transformed into rice (cv. Meixiangzhan 2). Three water treatments were set: normal irrigation (CK); partial root-zone drying (PRD); and 10% PEG-simulated water stress (PEG), combined with a nitrogen form ratio of ammonium nitrogen (NH₄⁺) to nitrate nitrogen (NO₃⁻) at 50:50 (A50/N50) for the coupled treatment of rice seedlings. The results showed that under the coupled treatment of PRD and the aforementioned nitrogen form, the expression level of the OsPIP2;1 gene in roots was upregulated by 0.62-fold on the seventh day, while its expression level in leaves was downregulated by 1.84-fold. Overexpression of OsPIP2;1 enabled Meixiangzhan 2 to maintain a higher abscisic acid (ABA) level under different water conditions, which helped rice reduce water potential and enhance water absorption. Compared with the CK treatment, overexpression of OsPIP2;1 increased the superoxide dismutase (SOD) activity of rice under PRD by 26.98%, effectively alleviating tissue damage caused by excessive accumulation of O₂⁻. The physiological and biochemical characteristics of OsPIP2;1-overexpressing rice showed correlations under PRD and A50/N50 nitrogen form conditions, with WUE exhibiting a significant positive correlation with transpiration rate, chlorophyll content, nitrogen content, and Rubisco enzyme activity. Overexpression of OsPIP2;1 could promote root growth and increase the total biomass of rice plants. The application of the OsPIP2;1 gene in rice genetic engineering modification holds great potential for improving important agricultural traits of crops. This study provides new insights into the mechanism by which the AQP family regulates water use in rice and has certain significance for exploring the role of AQP genes in rice growth and development as well as in response to water stress. Full article

Damping-off disease hinders rice seedling growth and reduces yield. Current control methods, such as seed or soil sterilization, rely on chemicals that cause environmental pollution and promote pathogen resistance. As a sustainable alternative, we targeted the damping-off resistance-related gene OsDGTq1 using CRISPR/Cas9. Field experiments first verified OsDGTq1’s significance in resistance. The CRISPR/Cas9 system, delivered via Agrobacterium-mediated transformation, was used to edit OsDGTq1 in rice cultivar Ilmi. Lesions from major damping-off pathogens, Rhizoctonia solani and Pythium graminicola, were observed on G₀ plants. All 37 regenerated plants contained T-DNA insertions. Among them, edits generated by sgRNA1-1, sgRNA1-2, and sgRNA1-3 resulted in the insertion of two thymine bases as target mutations. Edited lines were assigned names and evaluated for agronomic traits, seed-setting rates, and pathogen responses. Several lines with edited target genes showed distinct disease responses and altered gene expression compared to Ilmi, likely due to CRISPR/Cas9-induced sequence changes. Further studies in subsequent generations are needed to confirm the stability of these edits and their association with resistance. These results confirm that genome editing of OsDGTq1 alters resistance to damping-off. The approach demonstrates that gene-editing technology can accelerate rice breeding, offering an environmentally friendly strategy to develop resistant varieties. Such varieties can reduce chemical inputs, prevent pollution, and minimize seedling loss, ultimately enhancing food self-sufficiency and stabilizing rice supply. Full article

Arbuscular Mycorrhizal Fungi (AMF) can form symbiotic relationships with most plants. They can alleviate the toxic effects of heavy metals on plants. This study analyzed the effects of AMF (Diversispora versiformis, D.v.) on the physiological responses and root organic acid secretion of tomato (Solanum lycopersicum L.) under cadmium (Cd) stress, in order to elucidate how AMF enhance Cd tolerance. The results indicated that when the AMF inoculation rate of tomato seedlings ranged from 26.75% to 38.23%, the AMF treatment significantly promoted tomato growth. Cd significantly reduced the agronomic traits of tomato. However, AMF inoculation dramatically lowered the Cd level from 19.32 mg/kg to 11.54 mg/kg in tomato roots, and effectively reduced the negative effect of Cd toxicity on seedling growth. Cd stress also significantly reduced the chlorophyll fluorescence parameters, chlorophyll contents, and photosynthetic intensity parameters in seedling leaves, while the AMF treatment significantly increased these indicators. Under Cd stress, the AMF treatment significantly increased the activities of SOD, POD, and CAT, and reduced the levels of reactive oxygen species and the contents of osmotic regulatory substances in roots. Under Cd stress conditions, the AMF treatment also significantly increased the auxin level (57.24%) and reduced the abscisic acid level (18.19%), but had no significant effect on trans-zeatin riboside and gibberellin contents in roots. Cd stress markedly reduced the content of malic acid and succinic acid by 17.28% and 25.44%, respectively; however, after the AMF inoculation, these indicators only decreased by 2.47% and 2.63%, respectively. Under Cd stress, AMF could increase tomato roots’ antioxidant capacity to reduce ROS level, thereby alleviating the toxicity induced by ROS and maintaining reactive oxygen metabolism, enhancing the plant’s stress resistance. In summary, the AMF treatment enhances the osmotic regulation capacity and maintains the stability of cell membranes by reducing the levels of osmotic regulatory substances in roots. It also enhances the Cd tolerance of tomato plants by regulating the contents of root hormones and aerobic respiration metabolites, among other pathways. Therefore, inoculating plants with AMF is a prospective strategy for enhancing their adaptive capacity to Cd-polluted soils. Full article

Nitrogen is a critical nutrient that influences plant growth and resistance to pathogens; however, its impact on disease dynamics, particularly downy mildew infection, and the associated physiological responses in cucumber during early growth stages remains poorly understood. To evaluate the combined effects of downy mildew (caused by Pseudoperonospora cubensis) infection and nitrogen application on cucumber growth and physiological traits during the seedling and vine development stages, two downy mildew treatments— infected (B0) and non-infected(B1)—and three nitrogen levels—T1 (N-50%), T2 (N-100%), and T3 (N-150%)—were applied. Significant differences were observed between all treatments (p < 0.05). Among them, the B1T3 treatment had the most pronounced stimulatory effect, particularly on growth parameters (such as plant height, stem diameter, and leaf area). Without any disease infection (B1), the B1T2 treatment showed an increasing trend in photosynthetic rate and a more notable rise in stomatal conductance. In contrast, with downy mildew infection (B0), photosynthetic rates declined under B0T1 and B0T2. Moreover, with downy mildew infection (B0), the intracellular CO₂ concentration, stomatal conductance, and transpiration rate of cucumber leaves decreased in the B0T1, B0T2, and B0T3 treatments. Plant height, stem diameter, and leaf area responded variably to nitrogen levels and downy mildew infection. The total root length, root surface area, average root diameter, total root volume, and total root tips of cucumber plants were significantly different under different experimental conditions (p < 0.05). Consequently, this study provides a theoretical basis for stress-resistant cucumber cultivation in greenhouses and has practical implications for advancing the sustainable development of the greenhouse cucumber industry. Full article

Triploid breeding is a promising approach for developing seedless varieties, but the long juvenile phase of perennial fruit trees necessitates efficient early selection. In loquat (Eriobotrya japonica), a fruit crop with high demand for seedlessness, the relative contributions of hybridity, ploidy level, and parent-of-origin effects (POEs) to triploid seedling vigor remain elusive. To dissect these factors, we established a comprehensive experimental system comprising reciprocal diploid (2x), triploid (3x), and tetraploid (4x) hybrids from two genetically distinct cultivars. The ploidy, hybridity and genetic architecture of hybrid and parental groups were verified using flow cytometry, chromosome counting, newly developed InDel markers and genome-wide SNP analysis. Phenotypic evaluation of eight vigor-related traits revealed that plant height and soluble starch content were the most robust indicators of triploid heterosis in loquat. Notably, paternal-excess triploids [3x(p)] consistently outperformed all other groups. Quantitative analysis revealed POE as the main positive driver of triploid heterosis (+10.37% for plant height), far exceeding the negative impacts of hybridity (−12.75%) and ploidy level (−20.87%). These findings demonstrate that POE predominantly drives seedling vigor heterosis in triploid loquat. We propose a practical breeding strategy that combines prioritizing paternal-excess crosses with novel InDel markers for rapid verification of superior seedless progeny. Full article

Pearl millet is primarily grown under rainfed conditions in Sub-Saharan Africa. Early droughts are prevalent in the Sahel region, where pearl millet is widely cultivated, and they severely impact pearl millet growth and productivity by affecting plant stand and reducing plant density in the field. Consequently, genetic improvement for early drought tolerance is a promising strategy to enhance productivity in these regions. This study aims to identify pearl millet lines that are tolerant to water stress at the seedling stage by assessing various water-stress-tolerance traits. Two hundred pearl millet inbred lines were screened for drought tolerance by inducing water stress with polyethylene glycol 6000 (PEG 6000) in the laboratory. The experiment was repeated in the greenhouse using pot screening. The experimental design was an alpha lattice with 10 entries × 20 blocks in two replications. Four treatments (0 g/L, 115 g/L, 235 g/L, 289 g/L) were applied in the laboratory: one control and three concentrations of PEG 6000. Control and stress were applied in the greenhouse. Data were collected on germination rate and growth parameters, including root and seedling length, leaf length and width, and chlorophyll content. Results revealed significant differences among the pearl millet inbred lines under both drought and well-watered conditions. The inbred lines IP-16403 and IP-18062 were the most tolerant in both the greenhouse and laboratory. Water stress significantly reduced plant growth, although an increase in root length was observed in some lines. The number of days to 50% emergence was positively and strongly correlated with survival time (+0.45), while leaf width was negatively correlated with survival time (−0.29) and water stress tolerance (−0.37). The drought-tolerant and drought-susceptible pearl millet inbred lines identified in this study provide valuable genetic resources for enhancing pearl millet productivity in arid and semi-arid environments, especially in the face of unpredictable climate variability. Full article

The early stages of plant–microbe interaction are critical for establishing beneficial symbioses. We investigated how the endophytic fungus Fusarium solani strain FsK modulates tomato (Solanum lycopersicum) development and hormone pathways during in vitro co-cultivation. Seedlings were sampled at three early interaction stages (pre-contact, T1; initial contact, T2, 3 days post-contact, T3). Root traits and root and leaf transcripts for abscisic acid (ABA) and ethylene (ET) pathways were quantified, alongside fungal ET-biosynthesis genes. FsK altered root system architecture, increasing root area, lateral root number, root-hair length, and fresh biomass. These morphological changes coincided with tissue- and time-specific shifts. In leaves, FsK broadly affected ABA biosynthetic and homeostasis genes (ZEP1, NCED1, ABA2, AAO1, ABA-GT, BG1), indicating reduced de novo synthesis with enhanced deconjugation of stored ABA. ET biosynthesis was curtailed in leaves via down-regulation of ACC oxidase (ACO1–3), with isoform-specific changes in ACC synthase (ACS). The ET receptor ETR1 was transiently expressed early (T1–T2). FsK itself showed staged activation of fungal ET-biosynthesis genes. These results reveal coordinated fungal–plant hormone control at the transcriptional level that promotes root development during early interaction and support FsK’s potential as a biostimulant. Full article

Doubled haploid (DH) technology accelerates maize breeding by generating completely homozygous lines within two generations, but its efficiency depends on reliable haploid identification markers. The Purple plant 1 (Pl-1) root pigmentation marker has emerged as a promising alternative to R1-Navajo (R1-nj), which suffers from frequent suppression in tropical germplasm. This study evaluated Pl-1 expression and seedling vigor in 298 diverse Thai maize genotypes across four market classes under controlled growth chamber conditions (24 ± 1 °C, 85–90% humidity, and standardized lighting), followed by testcross analysis with 89 representative genotypes crossed with BHI306 to distinguish between allelic absence and epistatic suppression mechanisms. Complete absence of Pl-1 expression was observed in 99.3% of Thai genotypes, contrasting with consistent expression in the temperate-derived control (BHI306). Testcross F₁ progeny from 89 Thai × BHI306 crosses exhibited intermediate expression levels (1.57–2.05) across all market classes, confirming allelic absence rather than suppressor-mediated inhibition. Substantial genetic diversity was detected in seedling vigor traits independent of Pl-1 status, with root length varying 43-fold and fresh weight 20-fold, showing highly significant genotypic effects. The uniform lack of Pl-1 expression across Thai germplasm eliminates background interference, highlighting its utility as a complementary marker when introgressed from inducer lines. These findings establish the genetic foundation for implementing optimized DH breeding strategies in tropical maize through marker-assisted backcrossing approaches. Full article

As an important complementation of plant genetic traits, seed endophytes (SEs) have garnered significant attention due to their crucial roles in plant germination and early seedling establishment. In this study, we employed both culture-dependent and amplicon sequencing-based approaches to characterize the endophytic microbiome in seed samples derived from different individual Panax notoginseng plants. Additionally, we evaluated the antagonistic activity of isolated culturable bacterial SEs against the root rot pathogens Fusarium solani and F. oxysporum. Our results demonstrated that a greater sampling quantity substantially increased the species richness (Observed OTUs) and diversity of seed endophytic microbiota, underscoring the importance of seed population size in facilitating the vertical transmission of diverse endophytes to progeny. The endophytic communities (including both fungi and bacteria) exhibited a conserved core microbiota alongside host-specific rare taxa, forming a phylogenetically and functionally diverse endophytic resource pool. Core bacterial genera included Streptococcus, Methylobacterium-Methylorubrum, Sphingomonas, Burkholderia-Caballeronia-Paraburkholderia, Pantoea, Halomonas, Acinetobacter, Pseudomonas, Vibrio, and Luteibacter, while core fungal genera comprised Davidiella, Thermomyces, Botryotinia, Myrothecium, Haematonectria, and Chaetomium. Among 256 isolated endophytic bacterial strains, 11 exhibited strong inhibitory effects on the mycelial growth of F. solani and F. oxysporum. Further evaluation revealed that two antagonistic strains, Bacillus cereus and B. toyonensis, significantly enhanced seed germination and plant growth in P. notoginseng, and effectively suppressed root rot disease in seedlings. These findings highlight the potential use of SEs as biocontrol agents and growth promoters in sustainable agriculture. Full article

Leaf area (LA) and SPAD value (a proxy for chlorophyll content) are two key determinants of seedling quality. This study aimed to develop and validate approaches for the efficient retrieval of these features in order to facilitate both management and screening practices. In cucumber, different models were developed and tested for the accurate estimation of LA at the scale of the individual organ (cotyledon, leaf) by using its linear dimensions (length (L) and width (W)), and of the whole seedling by using the 2D image-extracted projected area (from three different angles: 0°, 45°, and 90°). At either scale, the SPAD value was computed by using image (90°)-based colorimetric features. The estimation of individual organ area was more accurate when using L alone, compared with W alone. By using the two dimensions and specific colorimetric features, the individual organ area (R² ≥ 0.92) and SPAD value (R² of 0.77) were accurately predicted. When considering a single view, the top one (90°) was associated with the highest accuracy in whole-seedling LA estimation, and the side view (0°) with the lowest (R² of 0.88 and 0.73, respectively). Using any combination of two angles, the whole-seedling LA was accurately retrieved (R² ≥ 0.88). When using colorimetric features, a poor estimation of the whole-seedling SPAD value was noted (R² ≤ 0.43). The deployment of artificial neural networks (ANNs) further allowed the estimation of specific organ shape traits, and improved the accuracy of all the aforementioned predictions, including the whole-seedling SPAD value (R² of 0.597). In conclusion, the findings of this study highlight that features readily retrieved from 2D images hold promising potential for improving screening routines within the nursery industry. Full article

Lesion mimic mutants (LMMs) represent valuable biological tools for investigating plant defense mechanisms and cell death. Although multiple genes triggering lesion mimic formation have been identified, the connection between the lesion mimic phenotype and primary nutrient biosynthesis remains poorly understood. In our study, we characterized a novel rice LMM, lmm9, which exhibited persistent reddish-brown necrotic lesions from seedling stage to maturity, coupled with compromised agronomic traits and increased mortality rates. Map-based cloning and whole-genome sequencing identified a causal insertion in the promoter of Os03g03450/OsPAT1, the sole homolog of Arabidopsis PAT1 in rice, resulting in reduced gene expression. Genetic complementation and RNAi assays confirmed that downregulation of OsPAT1 led to lesion mimic formation in lmm9. OsPAT1 could translate into two variants—the predominant OsPAT1.1 and the C-terminal variant OsPAT1.2. Structural modeling demonstrated high conservation between OsPAT1 and yeast TRP4, and OsPAT1.1 combining the plastid signal sequence of Arabidopsis PAT1 successfully complemented the trp4 mutant in yeast. Notably, OsPAT1.1 and OsPAT1.2 showed different localization patterns, with OsPAT1.1 targeted to mitochondria and OsPAT1.2 localized to chloroplasts. Transcription analysis showed significant upregulation of tryptophan biosynthesis pathway genes in lmm9, consequently increasing the relative abundance of tryptophan and associated metabolites. Our findings provided further evidence that mutations in tryptophan biosynthetic genes can induce lesion mimic phenotypes in rice and would enhance the understanding of metabolic homeostasis in plant stress responses and cell death regulation. Full article