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Keywords = solar-induced chlorophyll fluorescence (Fs)

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27 pages, 4090 KB  
Article
Diurnal and Seasonal Variations in Chlorophyll Fluorescence Associated with Photosynthesis at Leaf and Canopy Scales
by Petya K. E. Campbell, Karl F. Huemmrich, Elizabeth M. Middleton, Lauren A. Ward, Tommaso Julitta, Craig S. T. Daughtry, Andreas Burkart, Andrew L. Russ and William P. Kustas
Remote Sens. 2019, 11(5), 488; https://doi.org/10.3390/rs11050488 - 27 Feb 2019
Cited by 99 | Viewed by 12825
Abstract
There is a critical need for sensitive remote sensing approaches to monitor the parameters governing photosynthesis, at the temporal scales relevant to their natural dynamics. The photochemical reflectance index (PRI) and chlorophyll fluorescence (F) offer a strong potential for monitoring photosynthesis at local, [...] Read more.
There is a critical need for sensitive remote sensing approaches to monitor the parameters governing photosynthesis, at the temporal scales relevant to their natural dynamics. The photochemical reflectance index (PRI) and chlorophyll fluorescence (F) offer a strong potential for monitoring photosynthesis at local, regional, and global scales, however the relationships between photosynthesis and solar induced F (SIF) on diurnal and seasonal scales are not fully understood. This study examines how the fine spatial and temporal scale SIF observations relate to leaf level chlorophyll fluorescence metrics (i.e., PSII yield, YII and electron transport rate, ETR), canopy gross primary productivity (GPP), and PRI. The results contribute to enhancing the understanding of how SIF can be used to monitor canopy photosynthesis. This effort captured the seasonal and diurnal variation in GPP, reflectance, F, and SIF in the O2A (SIFA) and O2B (SIFB) atmospheric bands for corn (Zea mays L.) at a study site in Greenbelt, MD. Positive linear relationships of SIF to canopy GPP and to leaf ETR were documented, corroborating published reports. Our findings demonstrate that canopy SIF metrics are able to capture the dynamics in photosynthesis at both leaf and canopy levels, and show that the relationship between GPP and SIF metrics differs depending on the light conditions (i.e., above or below saturation level for photosynthesis). The sum of SIFA and SIFB (SIFA+B), as well as the SIFA+B yield, captured the dynamics in GPP and light use efficiency, suggesting the importance of including SIFB in monitoring photosynthetic function. Further efforts are required to determine if these findings will scale successfully to airborne and satellite levels, and to document the effects of data uncertainties on the scaling. Full article
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18 pages, 2875 KB  
Article
Parallel Seasonal Patterns of Photosynthesis, Fluorescence, and Reflectance Indices in Boreal Trees
by Kyle R. Springer, Ran Wang and John A. Gamon
Remote Sens. 2017, 9(7), 691; https://doi.org/10.3390/rs9070691 - 5 Jul 2017
Cited by 72 | Viewed by 9707
Abstract
Tree species in the boreal forest cycle between periods of active growth and dormancy alter their photosynthetic processes in response to changing environmental conditions. For deciduous species, these changes are readily visible, while evergreen species have subtler foliar changes during seasonal transitions. In [...] Read more.
Tree species in the boreal forest cycle between periods of active growth and dormancy alter their photosynthetic processes in response to changing environmental conditions. For deciduous species, these changes are readily visible, while evergreen species have subtler foliar changes during seasonal transitions. In this study, we used remotely sensed optical indices to observe seasonal changes in photosynthetic activity, or photosynthetic phenology, of six boreal tree species. We evaluated the normalized difference vegetation index (NDVI), the photochemical reflectance index (PRI), the chlorophyll/carotenoid index (CCI), and steady-state chlorophyll fluorescence (FS) as a measure of solar-induced fluorescence (SIF), and compared these optical metrics to gas exchange to determine their efficacy in detecting seasonal changes in plant photosynthetic activity. The NDVI and PRI exhibited complementary responses. The NDVI paralleled photosynthetic phenology in deciduous species, but not in evergreens. The PRI closely paralleled photosynthetic activity in evergreens, but less so in deciduous species. The CCI and FS tracked photosynthetic phenology in both deciduous and evergreen species. The seasonal patterns of optical metrics and photosynthetic activity revealed subtle differences across and within functional groups. With the CCI and fluorescence becoming available from satellite sensors, they offer new opportunities for assessing photosynthetic phenology, particularly for evergreen species, which have been difficult to assess with previous methods. Full article
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20 pages, 3598 KB  
Article
Assessing Band Sensitivity to Atmospheric Radiation Transfer for Space-Based Retrieval of Solar-Induced Chlorophyll Fluorescence
by Xinjie Liu and Liangyun Liu
Remote Sens. 2014, 6(11), 10656-10675; https://doi.org/10.3390/rs61110656 - 3 Nov 2014
Cited by 35 | Viewed by 6899
Abstract
In contrast to ground-based solar-induced chlorophyll fluorescence (Fs) detection, the influence of atmospheric radiation transfer is the major difficulty in Fs retrieval from space. In this study, we first simulated top-of-atmosphere (TOA) radiance using FluorMODgui3.1 and MODTRAN5 code. Based on the simulated dataset, [...] Read more.
In contrast to ground-based solar-induced chlorophyll fluorescence (Fs) detection, the influence of atmospheric radiation transfer is the major difficulty in Fs retrieval from space. In this study, we first simulated top-of-atmosphere (TOA) radiance using FluorMODgui3.1 and MODTRAN5 code. Based on the simulated dataset, we analyzed the sensitivities of five potential Fs retrieval bands (Hα, K I, Fe, O2-A, and O2-B) to different atmospheric transfer parameters, including atmosphere profile, aerosol optical depth (AOD550), vertical water vapor column (H2O), vertical ozone column (O3), solar zenith angle (SZA), view zenith angle (VZA), relative azimuth angle (RAA) and elevation. The results demonstrate that the Hα, O2-A and O2-B bands are the most sensitive to these atmospheric parameters. However, only the O2-A and O2-B bands were found to be sensitive to the imaging geometric parameters. When the spectral resolution was sufficient, the K I and Fe bands proved to have the best potential for space-based Fs retrieval given the current available accuracies of atmospheric products, while the O2-A band was shown to perform better at lower spectral resolutions. The band sensitivity analysis presented here will be useful for band selection and atmospheric correction for space-based Fs retrieval. Full article
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22 pages, 2798 KB  
Article
A Method to Reconstruct the Solar-Induced Canopy Fluorescence Spectrum from Hyperspectral Measurements
by Feng Zhao, Yiqing Guo, Wout Verhoef, Xingfa Gu, Liangyun Liu and Guijun Yang
Remote Sens. 2014, 6(10), 10171-10192; https://doi.org/10.3390/rs61010171 - 23 Oct 2014
Cited by 55 | Viewed by 9055
Abstract
A method for canopy Fluorescence Spectrum Reconstruction (FSR) is proposed in this study, which can be used to retrieve the solar-induced canopy fluorescence spectrum over the whole chlorophyll fluorescence emission region from 640–850 nm. Firstly, the radiance of the solar-induced chlorophyll fluorescence (Fs) [...] Read more.
A method for canopy Fluorescence Spectrum Reconstruction (FSR) is proposed in this study, which can be used to retrieve the solar-induced canopy fluorescence spectrum over the whole chlorophyll fluorescence emission region from 640–850 nm. Firstly, the radiance of the solar-induced chlorophyll fluorescence (Fs) at five absorption lines of the solar spectrum was retrieved by a Spectral Fitting Method (SFM). The Singular Vector Decomposition (SVD) technique was then used to extract three basis spectra from a training dataset simulated by the model SCOPE (Soil Canopy Observation, Photochemistry and Energy fluxes). Finally, these basis spectra were linearly combined to reconstruct the Fs spectrum, and the coefficients of them were determined by Weighted Linear Least Squares (WLLS) fitting with the five retrieved Fs values. Results for simulated datasets indicate that the FSR method could accurately reconstruct the Fs spectra from hyperspectral measurements acquired by instruments of high Spectral Resolution (SR) and Signal to Noise Ratio (SNR). The FSR method was also applied to an experimental dataset acquired in a diurnal experiment. The diurnal change of the reconstructed Fs spectra shows that the Fs radiance around noon was higher than that in the morning and afternoon, which is consistent with former studies. Finally, the potential and limitations of this method are discussed. Full article
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