Search Results (1,940)

Damping-off caused by Fusarium spp. limits tomato seedling establishment, while chemical control is constrained by resistance development and environmental risks. As a result, biological alternatives and nanomaterials have attracted increasing interest. This study aimed to quantify the in vitro inhibition and in vivo control of Fusarium spp. associated with tomato damping-off using the marine strains KN1 and KN2 of Stenotrophomonas rhizophila and copper oxide nanoparticles (CuO-NPs). Nine fungal isolates were recovered from symptomatic plants; the most virulent isolate (3DR23HA) caused 60% disease incidence and was identified as Fusarium oxysporum. In dual-culture assays, both bacterial strains inhibited mycelial growth, with percentage inhibition of radial growth (PIRG) values exceeding 65% in several isolates, whereas KN1 showed greater inhibition of conidial germination. CuO-NPs exhibited a concentration-dependent response, reaching near-complete suppression at 0.75–1.0 mg mL⁻¹. In seedlings, the inoculated control showed 100% incidence and a disease severity index (DSI) of 85%, whereas KN1, KN1 + CuO-NPs at 0.75 mg mL⁻¹, and KN2 + CuO-NPs at 0.75 mg mL⁻¹ achieved a DSI of 0 and 100% control efficiency, while also improving growth and biomass. Overall, S. rhizophila, particularly strain KN1, and CuO-NPs at 0.75 mg mL⁻¹ represent a promising strategy for the integrated management of tomato damping-off in nurseries. Full article

Fusarium oxysporum f. sp. lycopersici (FOL) is one of the most destructive soil-borne pathogens affecting tomato production worldwide, causing substantial yield losses and persisting in soil for extended periods. The increasing regulatory restrictions on chemical fungicides and the emergence of resistant pathogen strains have intensified the search for sustainable and environmentally friendly alternatives. This systematic review synthesizes studies published between 2000 and 2025 that evaluated the antifungal efficacy of essential oils (EOs), their bioactive constituents, and EO-based nanoformulations against FOL in tomato. A total of 40 studies were included, following the PRISMA 2020 guidelines, encompassing in vitro, greenhouse, and limited field evaluations. Many EOs rich in phenolic compounds and oxygenated monoterpenes, such as thymol, carvacrol, eugenol, citral, and menthol, consistently inhibited FOL growth and spore germination, with reported mycelial growth inhibition ranging from 60 to 100% and minimum inhibitory concentrations (MICs) between 0.05 and 1.5 µL ml⁻¹. However, the use of EOs is often limited because they evaporate quickly, do not mix well with water, can harm plants, and do not persist under field conditions. Nano-delivery systems, including nanoemulsions, polymeric nanoparticles, chitosan-based carriers, and lipid-based nanostructures, have been shown to enhance the stability, bioavailability, and antifungal efficacy of EOs. This has led to improved disease management and reduced pesticide application rates. In addition, several EO-based treatments have been reported to activate plant defense responses, including the induction of defense-related genes, antioxidant enzymes, and epigenetic modifications. Overall, EO-based nanoformulations show promise as next-generation biopesticides for the sustainable management of tomato Fusarium wilt. Nevertheless, large-scale field validation, standardized formulation protocols, and regulatory assessments are required before these technologies can be widely implemented in agriculture. Full article

Epigenetic regulation plays a central role in modulating plant immune responses and interactions with beneficial microbes. In this study, we investigated the contribution of RNA-directed DNA methylation (RdDM) components—DCL3; AGO9; DCL1; and the de novo DNA methyltransferases CMT3, DRM1, and DRM2—to the interaction between Arabidopsis thaliana, Trichoderma atroviride, and foliar pathogens. We show that DCL3 and AGO9 differentially regulate basal and inducible immunity, negatively affecting resistance to the necrotrophic fungus Botrytis cinerea, while promoting defense against the hemibiotrophic bacterium Pseudomonas syringae pv. tomato DC3000. Transcriptional analyses revealed that RdDM components modulate the balance between jasmonic acid/ethylene (JA/ET) and salicylic acid (SA) signaling pathways, influencing the amplitude and coordination of defense responses. In addition, DCL3 and DCL1 appear to be required for the full expression of T. atroviride-mediated systemic resistance, whereas AGO9 and DNA methyltransferases contribute to efficient root colonization. Notably, mutants in these pathways displayed enhanced basal resistance but impaired responsiveness to beneficial microbial signals, revealing a trade-off between constitutive defense activation and inducible systemic protection. Consistent with this, alterations in RdDM components were also associated with changes in plant growth dynamics under specific conditions, supporting a role for epigenetic regulation in coordinating growth–defense trade-offs. Together, our findings support a model in which epigenetic regulation controls defense responsiveness, enabling plants to balance immune activation, growth and compatibility toward beneficial microbes. Full article

Tomato (Solanum lycopersicum L.) is a globally important vegetable, prized for its nutritional value and antioxidant content. Given the increasing demand for foods with health-promoting properties and the need for sustainable production practices, this study evaluated the impact of different growth substrates combined with plant growth-promoting rhizobacteria (PGPR) inoculation on the yield and nutraceutical quality of greenhouse tomatoes grown in a semi-hydroponic system. ‘Nereida’ variety saladette tomato plants were either inoculated with a single PGPR consortium (1 × 10⁸ CFU mL⁻¹) or uninoculated. Three substrates were used: a chemical fertilization control and a sand-vermicompost mixture with two inherent levels of phosphorus (253 and 442 ppm). The chemically fertilized substrate without inoculation served as the control treatment. The results indicated that the chemically fertilized substrate presented a significantly higher yield per square meter (p < 0.05), reaching values of 5.20 ± 0.70 kg m⁻² and 4.83 ± 0.35 kg m⁻² in the control treatment. However, fruits grown in the vermicompost-based substrate with higher phosphorus content (442 ppm) and PGPR inoculation exhibited significantly greater antioxidant capacity (54.16 µmol TE g⁻¹ FW) and higher concentrations of vitamin C (14.03 mg·100 g⁻¹ FW), lycopene (47.68 mg·100 g⁻¹ FW), flavonoids, carotenoids, and glutathione. This represented an increase of 28–45% in bioactive compounds including lycopene, vitamin C, flavonoids, carotenoids, and glutathione compared to the chemical control. While the interaction between substrate and inoculation was significant only for soluble solids, both factors independently and additively contributed to the enhancement of nutraceutical parameters. These findings suggest that the use of vermicompost-based substrates, particularly those with higher phosphorus content, in combination with PGPR inoculation, is a promising strategy to enhance the accumulation of health-promoting bioactive compounds in tomato fruits, despite a trade-off in total yield. Full article

Crop simulation models and irrigation decision support systems (IDSS) are essential tools for improving water use efficiency, particularly in Mediterranean and semi-arid regions where water scarcity is a major constraint. However, many platforms are either too complex for widespread adoption or too simplified to capture the combined effects of temperature, water stress, and elevated CO₂ on crop responses. This paper presents the Easy Simulator Crop Model (EaSiCroM), a modular, low-parameterisation system designed to simulate daily crop growth, soil water dynamics, and irrigation requirements. Canopy development follows a beta-function LAI trajectory with Beer–Lambert canopy cover, progressively constrained by temperature (T_lim) and water stress (K_stress, KS_cc). Biomass accumulation combines a water productivity (WP) approach with an optional radiation-use efficiency (RUE) pathway, both scaled by a Michaelis–Menten CO₂ fertilisation sub-model. The soil water balance includes a two-stage bare-soil evaporation formulation and multiple irrigation triggering strategies. EaSiCroM is implemented as a Docker-containerised web application supporting single-crop, multi-plot, and near-real-time irrigation modes, with optional assimilation of user-provided canopy observations from field or remote sensing sources. A proof-of-concept evaluation across four Mediterranean crops (processing tomato, biomass sorghum, sunflower, and durum wheat) yielded RRMSE values between 13.8% and 26.1%, comparable to AquaCrop and CropSyst on the same datasets. Its modular architecture makes it suitable for both research and operational irrigation management in water-scarce environments. Full article

To enhance the benefits and ecological safety of tomato residue retention, this study evaluated the regulatory effects of conventional ambient temperature retention (CR) and solar high-temperature retention (TR) on the initial soil environment and rhizosphere microecology of subsequent crops (continuous tomato and rotational cucumber). The results showed that CR promoted the accumulation of humic acid and increased the contents of phenolic acids and small-molecule organic acids in the soil. TR also increased small-molecule organic acids but primarily enriched fulvic acid, accompanied by higher concentrations of phenolic acids. Regarding microecological responses, CR enriched potential plant-growth-promoting bacteria (Pseudomonas, Sphingomonas, Lysobacter) in the rhizosphere, but it also increased the relative abundance of the potential pathogen Fusarium. In contrast, TR promoted the colonization of heat-tolerant beneficial biocontrol microbes (Bacillus, Chaetomium, Mycothermus), with no Fusarium enrichment observed. Redundancy analysis and Mantel tests revealed that the changes in soil nutrients and organic acid fractions induced by residue retention were correlated with the succession of the rhizosphere microbial community and the reconstruction of the metabolic profile. This study demonstrates that TR can effectively mitigate the risk of pathogen enrichment associated with ambient temperature retention, constructing a potentially disease-suppressive initial microecological environment for subsequent crops. Full article

Traditional disease management, which is based on the application of synthetic chemical products, has negatively affected human health and the environment. A sustainable approach based on the application of natural compounds and microorganisms is potentially better for consumer health. Thus, the aim of this study was to evaluate the efficacy of plant-based and/or organic products against soilborne fungal pathogens of tomato. A preliminary in vitro experiment was performed to select potential putative inhibitory products (PIPs) and fungal pathogens that were then used in an in vivo experiment conducted inside a greenhouse that mimics real-world field conditions. For the greenhouse experiment, bergamot and pomegranate wastes and the commercial product EP5 were selected as the PIPs to control Agroathelia rolfsii, Fusarium oxysporum and Sclerotinia sclerotiorum growth. Each pot was artificially inoculated three days before the low-dose treatment, and one tomato seedling was transplanted into each pot four days after the treatment. Data regarding the phytosanitary status of the plants and roots, as well as their length and weight, were collected after 45 days, and the results obtained demonstrate that plant-derived products were able to mitigate fungal diseases, with pomegranate waste being the most effective. Also, the EP5 product, as a resistant inducer, was able to significantly improve the natural defense of tomato plants, resulting in it being the best PIP used. Mycological analyses were performed on the roots to assess the presence of inoculated fungal pathogens after natural product treatment. Overall, the results confirm that the PIPs are suitable for crop management, but the outcomes are variable. In general, pomegranate waste and EP5 significantly protected the roots against fungal attacks, while bergamot waste showed lower efficacy. This trend was not observed for plant length and weight, as the treated plants showed results similar to those of the untreated controls. In conclusion, natural products are a valid alternative to chemicals, as they demonstrate both efficacy and safety, but their potential should be further investigated in field trials. Full article

The tomato hind (Cephalopholis sonnerati) is a marine aquaculture fish species with high economic value. Elucidating the mechanisms underlying its growth regulation is crucial for the development of the aquaculture industry. To analyze the biological mechanisms underlying growth differences, individuals with extreme body sizes at 8 months of age from the same batch were selected in this study. A combined experiment of “body size × feeding status” was constructed, and transcriptome sequencing and weighted gene co-expression network analysis (WGCNA) were performed on brain and muscle tissues. The results showed that 2553 differentially expressed genes (DEGs) were identified between individuals with distinct body sizes, which were significantly enriched in growth regulation pathways such as PI3K–Akt, MAPK, and FoxO. Feeding differences affected 4480 genes, which were significantly enriched in signaling pathways including the insulin signaling pathway. WGCNA further identified co-expression modules (brown4, blue, coral1) significantly correlated with growth, as well as hub genes including pik3r1 and eif4ebp2. Comprehensive analysis demonstrated that the growth regulation of C. sonnerati operates as a cascade network. Brain tissues perceive signals through neuroactive ligand–receptor interactions and integrate and transduce these signals via core pathways including Ras–MAPK and PI3K–Akt. Finally, growth processes are executed in muscle tissues by regulating glycogen metabolism, protein synthesis, and other processes, which are precisely regulated by terminal processes such as cellular senescence. Among them, pik3r1 and eif4ebp2, as key molecular switches, play a central role in integrating upstream signals and precisely regulating downstream growth programs. This study preliminarily clarifies the molecular mechanism network of growth differences in C. sonnerati, providing a theoretical basis and candidate genes for the genetic improvement of its growth traits. Full article

Biostimulants offer a sustainable strategy to improve plant growth and stress resilience, particularly under limited water availability. We evaluated seven biostimulant treatments, including beneficial bacteria, mycorrhizal fungi, seaweed extract with humic acid, and their combinations, on early growth and physiological responses of tomato (Solanum lycopersicum L.) under well–watered and drought-stressed conditions. Plants were assessed before and after a seven-day controlled drought period using a range of morphological and physiological traits, including height, effective quantum yield of PSII (Φ_PSII), stomatal conductance (g_s), and leaf pigment profile. Results showed that microbial treatments that included Bacteria + Mycorrhizae (B + M) maintained Φ_PSII above 0.60 and preserved height gain relative to the control, while seaweed-based formulations with humic acid (S + H) exhibited significant reductions in height of up to 35% compared with full irrigation. In addition, the bacterial treatment (B) significantly increased the root/shoot ratio under drought, indicating enhanced carbon allocation to roots. These findings demonstrate that specific microbial-based biostimulant combinations can better maintain physiological performance and growth under water limitation, supporting their potential use in sustainable tomato production systems. Full article

Although peanut shells represent an abundant agricultural waste, their high-value utilization potential as a horticultural substrate has not been fully recognized. Meanwhile, horticultural crops such as tomatoes are in urgent demand for high-quality and innovative cultivation substrates. This study investigated the effects of different ratios of peanut shell–substrate on tomato yield and rhizosphere bacterial community structure, aiming to provide a theoretical basis for the utilization of agricultural waste and the development of novel growth substrates for tomato cultivation. Results showed that peanut shell–substrate improved tomato yield and quality, and enhanced soil urease, sucrase, and catalase activities. High-throughput 16S rRNA gene sequencing revealed significant differences in rhizosphere bacterial alpha diversity between peanut shell substrates and the control. Proteobacteria, Acidobacteria, and Actinobacteriota were the dominant phyla, while unclassified genera, Devosia A_501803 and Bauldia, were identified as the core genera at the genus level. In conclusion, peanut shell substrates enriched dominant functional bacterial genera and enhanced the ecological functions of the substrate. Full article

Botrytis cinerea, the causative agent of gray mold, is a major fungal pathogen affecting a wide range of economically important crops. To identify sustainable alternatives to chemical fungicides, this study characterized the biocontrol potential of two bacterial strains, Serratia quinivorans NFX21 and Pseudomonas thivervalensis NFX104, through genomic analysis and functional assays targeting key stages of fungal growth and plant infection. The NFX21 and NFX104 strains significantly inhibited B. cinerea mycelial growth (~35%) and strongly suppressed conidial germination with performances comparable to the reference biocontrol strain Bacillus amyloliquefaciens QST 713. In tomato detached-leaf and whole-plant pot assays, application of NFX21 and NFX104 significantly reduced gray mold incidence and lesion severity relative to nontreated infected plants (53–64%, detached leaves; 12–13%, whole-plant assays), achieving disease control levels similar to those obtained with the commercial biofungicide Serenade ASO^®. Whole-genome sequencing allowed the taxonomic assignment of the NFX strains and revealed a rich repertoire of biosynthetic gene clusters and antifungal determinants. The NFX21 genome contained genes associated with N-acyl-homoserine lactone-mediated quorum-sensing and production of lipopeptides, siderophores, and extracellular lytic enzymes. The NFX104 genome harbored clusters involved in the biosynthesis of multiple siderophores, 2,4-diacetylphloroglucinol and hydrogen cyanide. Moreover, both the NFX21 and NFX104 genomes contained additional low-homology clusters that potentially encode for novel unexplored metabolites. Collectively, these results support the translational potential of NFX21 and NFX104 as biocontrol candidates for sustainable, integrated management of gray mold caused by B. cinerea. Full article

Strawberry is an economically important horticultural crop cultivated worldwide. However, its growth, yield, and fruit quality are severely constrained by abiotic stresses, such as salinity, drought, and low temperature, as well as biotic stresses including pathogen attack and pest infestation. WRKY transcription factors (TFs) have been extensively characterized in model plants such as Arabidopsis and rice, and increasing evidence highlights their functional diversification and regulatory importance in horticultural crops, including tomato and grapevine. In this review, we summarize recent advances in understanding the roles of WRKY TFs in strawberry responses to both biotic and abiotic stresses, based on studies in both the diploid woodland strawberry (Fragaria vesca L.) and the octoploid cultivated strawberry (Fragaria × ananassa Duchesne). We discuss their involvement in hormone crosstalk, redox regulation, and transcriptional control within complex stress-response networks, while distinguishing expression-based associations from experimentally validated regulatory functions. To provide a clear framework for evaluating the current evidence, we categorize the findings according to a hierarchy of experimental validation, ranging from direct functional characterization in strawberry, to transient assays, heterologous systems (e.g., Arabidopsis or tobacco), transcriptomic inferences, and predictions based on sequence homology. Finally, we outline potential future directions for exploiting strawberry WRKY TFs as candidate regulators in molecular breeding, thereby providing a theoretical basis for future functional studies and breeding applications. Full article

Greenhouse cultivation enables year-round vegetable production and high yields through precise environmental regulation. Yet, the same stable microclimate that promotes crop growth also favors the proliferation of pests and diseases. This review synthesizes current knowledge on how greenhouse climate variables govern pest and disease epidemiology in tomato, cucumber, and sweet pepper. Only greenhouse-based studies were included to ensure direct relevance to protected horticulture. Microclimatic stability determines infection probability, vector behavior, and host susceptibility. Warm, humid conditions promote fungal and bacterial pathogens, whereas dry, high vapor pressure deficit (VPD) environments favor mites and thrips and enhance virus transmission. Species-specific traits further modulate vulnerability. Tomato is dominated by virus–bacterium complexes and foliar/stem fungal diseases, cucumber by phytopathogenic fungi favored by high relative humidity (RH) and soilborne pathogens, and sweet pepper by virus–vector systems and long-cycle fungal infections. Temperature exerts the strongest influence, while RH and VPD jointly regulate surface moisture and vector activity. Light intensity and spectral composition also affect pest orientation and fungal sporulation. Integrating environmental sensing, biological control, and adaptive climate regulation offers a pathway toward preventive, climate-smart Integrated Pest Management (IPM). The review highlights the emerging role of climate-informed decision-support systems (DSSs) and the need for greenhouse-specific datasets to improve pest and disease forecasting. Full article

The escalating demand for sustainable, nutrient-dense feeds underscores the need to valorize the agro-industrial byproducts utilizing innovative bioconversion strategies. In this context, we have studied the feasibility of incorporating tomato (Solanum lycopersicum) cultivation residues into Black Soldier Fly (BSF) larvae diets to produce high-protein insect meals. These residues are known to contain the naturally occurring toxic steroidal alkaloids tomatidine and α-tomatine, prohibiting their incorporation into human and animal diets. Herein, the tomato cultivation biomass was dried and mill-ground, and its varying volumes were incorporated into standard poultry feed (seven diet levels with 0–100% biomass inclusion) and tested in BSF-larvae-rearing trials to produce insect meals. The optimal results with respect to larvae growth, protein accumulation (highest value = 30.61%), lipid–fiber content, and antioxidant capacity were determined for insect meals obtained from BSF larvae reared with a ration composed of 40% tomato plant biomass. In addition, the toxicity of this insect meal was substantially low, as a consequence of the observed groundbreaking reduction in the contained toxic steroidal alkaloids α-tomatine and its aglycone tomatidine. The results herein reveal the efficacy of the BSF-larvae-rearing process in acting as a biological filter for the bioconversion of the toxic tomato cultivation waste into a functional, safe, and protein-rich livestock feed, supporting the principles of a circular economy. Full article

This study evaluated cherry tomato seedling production using pirapitinga RAS wastewater as the sole nutrient source in four substrate formulations: T1 (sand, gravel and coconut fiber), T2 (sand and gravel), T3 (gravel and coconut fiber), and T4 (sand and coconut fiber). No differences were observed for germination quality, germination percentage, seedling vigor index, germination vigor index, moisture content, total wet biomass, total dry biomass, or mortality. For small plants, leaf number (LN) was higher in T2 and lower in T4, while root length was greater in T3. The number of medium plants was higher in T3 and lower in T4; LN was higher in T1 and T2 and lowest in T3. For large plants, LN was higher in T1 and T2 and lower in T3; total length was higher in T1 and lower in T3 and T4. Visual differences in substrate water retention were observed: T4 exhibited rapid surface drying, T1 and T2 showed moderate moisture persistence, and T3 maintained surface water. Leaf yellowing was observed after 25 days, suggesting possible nutrient limitation or reduced nutrient availability at the measured pH. These findings indicate that substrate physical characteristics influence early seedling growth performance, whereas pirapitinga RAS wastewater can serve as a viable nutrient source. Full article