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Tomato (Solanum lycopersicum) is a widely consumed vegetable crop and an established model system for plant functional genomics and genetic research in dicotyledons. Salt stress is a major abiotic factor limiting tomato productivity worldwide. The WRKY transcription factor family, one of the largest and most conserved plant-specific transcription factor families, plays pivotal roles in stress responses. This review summarizes recent advances in understanding the functions of tomato WRKY genes under salt stress, focusing on the genomic basis and evolutionary characteristics of the WRKY family, the roles of core WRKY members under salt stress, and the multi-layered regulatory networks mediating WRKY-dependent salt and alkali tolerance. To date, approximately 10 core SlWRKY genes have been functionally validated to regulate tomato salt tolerance, mainly by maintaining ion homeostasis, regulating reactive oxygen species (ROS) balance, facilitating osmotic adjustment, and integrating hormone signaling pathways. Despite this progress, systemic regulatory hierarchies and epigenetic modulation remain poorly resolved. Furthermore, we discuss how specific WRKY members directly regulate downstream effector genes, such as SlSOS1 and SlNHX4. However, direct experimental evidence for the coordination between tomato WRKYs and mitogen-activated protein kinase (MAPK) cascades, as well as epigenetic modifiers under salt stress, is still scarce in current studies. This review provides a theoretical framework and outlines potential technical pathways for translating fundamental insights into tomato salt tolerance into practical applications for sustainable agriculture. Full article

With global warming and climate change, drought stress is nowadays a threatening problem for growing vegetable crops worldwide. The introduction of more resilient and less water-demanding varieties is a key aspect for sustainable vegetable production, especially in Mediterranean countries where water availability for agricultural uses is progressively decreasing. This review highlights different mechanisms of tomato plant, as one of the most important crops of the Mediterranean countries, which are activated at physiological, biochemical and molecular levels in response to drought. With regard to the root system architecture modification, osmotic adjustments, and hormonal and antioxidant regulations are discussed. For vegetative organs, plant architecture, leaf morphology adjustments and stomatal regulation are described. Major genetic traits related to drought stress, along with responsive genes, are listed. The metabolic pathways, which determine the tolerance to drought stress, are reported and their related molecular markers used for the molecular-assisted selection (MAS) are listed. Novel growing systems and techniques which can improve efficiency for mitigating drought are highlighted; in addition, different breeding methods, both conventional and new gene-editing ones, are mentioned. Full article

Biostimulants offer a sustainable strategy to improve plant growth and stress resilience, particularly under limited water availability. We evaluated seven biostimulant treatments, including beneficial bacteria, mycorrhizal fungi, seaweed extract with humic acid, and their combinations, on early growth and physiological responses of tomato (Solanum lycopersicum L.) under well–watered and drought-stressed conditions. Plants were assessed before and after a seven-day controlled drought period using a range of morphological and physiological traits, including height, effective quantum yield of PSII (Φ_PSII), stomatal conductance (g_s), and leaf pigment profile. Results showed that microbial treatments that included Bacteria + Mycorrhizae (B + M) maintained Φ_PSII above 0.60 and preserved height gain relative to the control, while seaweed-based formulations with humic acid (S + H) exhibited significant reductions in height of up to 35% compared with full irrigation. In addition, the bacterial treatment (B) significantly increased the root/shoot ratio under drought, indicating enhanced carbon allocation to roots. These findings demonstrate that specific microbial-based biostimulant combinations can better maintain physiological performance and growth under water limitation, supporting their potential use in sustainable tomato production systems. Full article

Tomato high pigment-2 (hp-2^dg, hp-2, and hp-2^j) mutant lines are characterized by mutations in the DE-ETIOLATED1 (SlDET1; Solyc01g056340) gene. SlDET1 is responsible for encoding a nuclear protein that acts as a negative regulator involved in light signaling, repressing photomorphogenesis. These tomato mutant lines are known for increased levels of antioxidant pigments in fruits, such as flavonoids and carotenoids, compared to the wild-type fruits. In this study, CRISPR/Cas9, followed by the non-homologous end joining mechanism of repair (NHEJ), was used to target the SlDET1 gene and investigate whether the effects of these mutations could mimic the effects of hp-2 mutant lines, improving the nutritional features of tomato fruits. Our results indicated that mutations generated by CRISPR/Cas9 NHEJ in the hp-2 and hp-2^j regions (exon 11) resulted in significant changes in the SlDET1 coding and protein sequences. These mutations caused a low survival rate of edited sprouts and regenerated plants with a very compromised capacity of allelic heritability of these mutations for the following generations. However, regenerated plants containing these site-specific mutations in the SlDET1 gene showed higher levels of phytochemicals in ripe fruits. Furthermore, these edited plants also showed an upregulation of structural genes involved in the synthesis of these biocompounds. Although the SlDET1 gene could be considered an interesting target gene for the nutritional improvement of tomato fruits, our results showed that mutations within its exon 11 are quite critical and can induce severe perturbations in plant physiology, with a compromised possibility to develop new stable edited lines. Full article

Early and accurate identification of tomato leaf diseases constitutes a key safeguard for mitigating economic losses in tomato production. Conventional tomato leaf disease detection methodologies are constrained by inherent limitations, such as low operational efficiency, inadequate detection precision, and limited adaptability to environmental fluctuations. In contrast, the integration of deep learning techniques has yielded improvements in this research domain. Consequently, the development of deep learning-based approaches for the rapid and precise detection of tomato leaf diseases holds considerable theoretical significance and practical application value. To improve the detection accuracy of tomato leaf diseases, this study proposes a transfer learning-based DenseNet disease recognition model named DenseNet-BiFPN-ECA Fusion Network. The bidirectional feature pyramid network (BiFPN) is introduced at the terminal of DenseNet121 to achieve multi-scale feature fusion, while the efficient channel attention (ECA) mechanism is applied to enhance the discriminative capacity of fused features. Classification is ultimately completed via a global average pooling layer and a fully connected layer. The experimental results demonstrate that the improved model achieves an accuracy of 90.63% on the small-sample tomato leaf dataset collected from complex greenhouse environments, representing an improvement of 20.32 percentage points over the original DenseNet121 model. On the large-scale open-source Plant Village dataset, the model attains an accuracy of 98.47%, significantly outperforming the baseline models. Furthermore, a comparative analysis shows that the highest accuracy achieved by DenseNet, ResNet101, and VGG16 models on the same dataset is only 83.59% (within ±0.5%). This result validates the effectiveness of DenseNet-BiFPN-ECA Fusion Network in disease recognition tasks. The model provides a reliable technical reference for the intelligent diagnosis of tomato leaf diseases. Full article

Botrytis cinerea, the causative agent of gray mold, is a major fungal pathogen affecting a wide range of economically important crops. To identify sustainable alternatives to chemical fungicides, this study characterized the biocontrol potential of two bacterial strains, Serratia quinivorans NFX21 and Pseudomonas thivervalensis NFX104, through genomic analysis and functional assays targeting key stages of fungal growth and plant infection. The NFX21 and NFX104 strains significantly inhibited B. cinerea mycelial growth (~35%) and strongly suppressed conidial germination with performances comparable to the reference biocontrol strain Bacillus amyloliquefaciens QST 713. In tomato detached-leaf and whole-plant pot assays, application of NFX21 and NFX104 significantly reduced gray mold incidence and lesion severity relative to nontreated infected plants (53–64%, detached leaves; 12–13%, whole-plant assays), achieving disease control levels similar to those obtained with the commercial biofungicide Serenade ASO^®. Whole-genome sequencing allowed the taxonomic assignment of the NFX strains and revealed a rich repertoire of biosynthetic gene clusters and antifungal determinants. The NFX21 genome contained genes associated with N-acyl-homoserine lactone-mediated quorum-sensing and production of lipopeptides, siderophores, and extracellular lytic enzymes. The NFX104 genome harbored clusters involved in the biosynthesis of multiple siderophores, 2,4-diacetylphloroglucinol and hydrogen cyanide. Moreover, both the NFX21 and NFX104 genomes contained additional low-homology clusters that potentially encode for novel unexplored metabolites. Collectively, these results support the translational potential of NFX21 and NFX104 as biocontrol candidates for sustainable, integrated management of gray mold caused by B. cinerea. Full article

Strawberry is an economically important horticultural crop cultivated worldwide. However, its growth, yield, and fruit quality are severely constrained by abiotic stresses, such as salinity, drought, and low temperature, as well as biotic stresses including pathogen attack and pest infestation. WRKY transcription factors (TFs) have been extensively characterized in model plants such as Arabidopsis and rice, and increasing evidence highlights their functional diversification and regulatory importance in horticultural crops, including tomato and grapevine. In this review, we summarize recent advances in understanding the roles of WRKY TFs in strawberry responses to both biotic and abiotic stresses, based on studies in both the diploid woodland strawberry (Fragaria vesca L.) and the octoploid cultivated strawberry (Fragaria × ananassa Duchesne). We discuss their involvement in hormone crosstalk, redox regulation, and transcriptional control within complex stress-response networks, while distinguishing expression-based associations from experimentally validated regulatory functions. To provide a clear framework for evaluating the current evidence, we categorize the findings according to a hierarchy of experimental validation, ranging from direct functional characterization in strawberry, to transient assays, heterologous systems (e.g., Arabidopsis or tobacco), transcriptomic inferences, and predictions based on sequence homology. Finally, we outline potential future directions for exploiting strawberry WRKY TFs as candidate regulators in molecular breeding, thereby providing a theoretical basis for future functional studies and breeding applications. Full article

The escalating demand for sustainable, nutrient-dense feeds underscores the need to valorize the agro-industrial byproducts utilizing innovative bioconversion strategies. In this context, we have studied the feasibility of incorporating tomato (Solanum lycopersicum) cultivation residues into Black Soldier Fly (BSF) larvae diets to produce high-protein insect meals. These residues are known to contain the naturally occurring toxic steroidal alkaloids tomatidine and α-tomatine, prohibiting their incorporation into human and animal diets. Herein, the tomato cultivation biomass was dried and mill-ground, and its varying volumes were incorporated into standard poultry feed (seven diet levels with 0–100% biomass inclusion) and tested in BSF-larvae-rearing trials to produce insect meals. The optimal results with respect to larvae growth, protein accumulation (highest value = 30.61%), lipid–fiber content, and antioxidant capacity were determined for insect meals obtained from BSF larvae reared with a ration composed of 40% tomato plant biomass. In addition, the toxicity of this insect meal was substantially low, as a consequence of the observed groundbreaking reduction in the contained toxic steroidal alkaloids α-tomatine and its aglycone tomatidine. The results herein reveal the efficacy of the BSF-larvae-rearing process in acting as a biological filter for the bioconversion of the toxic tomato cultivation waste into a functional, safe, and protein-rich livestock feed, supporting the principles of a circular economy. Full article

Drought is a major constraint on crop productivity, and microbial inoculants are increasingly explored to mitigate plant water stress. However, most inoculant discovery pipelines rely on trait-based screening performed outside the ecological context in which beneficial plant-microbe interactions naturally arise. In natural soils, drought-exposed plants can reshape the rhizosphere environment by altering carbon allocation and root exudation, thereby selectively recruiting microorganisms compatible with water-limited conditions and effectively performing an ecological pre-selection. Here, we captured this process during early seedling establishment and leveraged drought-driven rhizosphere recruitment as a nature-guided strategy to nominate bacterial inoculant candidates. Tomato seedlings were grown in natural agricultural soil microcosms under well-watered and drought-stressed regimes, and cultivable bacteria were comparatively isolated from rhizosphere and bulk soil fractions. Recruitment-prioritized isolates were subsequently characterized through biochemical assays and genome-informed analyses to provide functional and taxonomic context and were evaluated in early inoculation assays under water stress. Drought-recruited isolates displayed distinct plant-associated responses, and genome-scale taxonomy indicated that one drought-associated isolate represents a genomically distinct lineage within the genus Paracoccus. Together, these findings highlight drought-driven rhizosphere recruitment as an ecologically grounded framework for identifying stress-compatible bacterial candidates and uncovering previously undescribed rhizosphere diversity. Full article

To solve the problem of limited generalization ability that is widely existing in lightweight models used for leaf disease detection, this paper puts forward a lightweight detection model named CE-Fusion Botanic, which is based on the adaptive control of local–global information fusion. Therefore, this model includes a globally guided dynamic gating fusion mechanism that dynamically adjusts fusion weights between local features, such as spot lesions, and global semantic features, such as symptoms of systemic infection, thus realizing adaptive perception of the dual characteristics of plant diseases. Hence, the local information extraction branch combines an improved MobileNetV3-Small structure and a CBAM attention mechanism, while the global information extraction branch uses a lightweight Vision Transformer (ViT) design called EffiViT. Comprehensive contrast experiments were carried out by using seven mainstream lightweight models on the PlantVillage tomato disease subset, the full-category PlantVillage leaf disease dataset, and the Grapevine leaf disease dataset. Models were divided into large-scale, medium-scale, and small-scale groups according to the number of parameters. The results show that CE-Fusion Botanic is significantly better than comparative methods in both detection accuracy and generalization performance, and at the same time, it keeps a lightweight profile, which demonstrates superior cross-dataset adaptation capabilities. Full article

This study evaluated cherry tomato seedling production using pirapitinga RAS wastewater as the sole nutrient source in four substrate formulations: T1 (sand, gravel and coconut fiber), T2 (sand and gravel), T3 (gravel and coconut fiber), and T4 (sand and coconut fiber). No differences were observed for germination quality, germination percentage, seedling vigor index, germination vigor index, moisture content, total wet biomass, total dry biomass, or mortality. For small plants, leaf number (LN) was higher in T2 and lower in T4, while root length was greater in T3. The number of medium plants was higher in T3 and lower in T4; LN was higher in T1 and T2 and lowest in T3. For large plants, LN was higher in T1 and T2 and lower in T3; total length was higher in T1 and lower in T3 and T4. Visual differences in substrate water retention were observed: T4 exhibited rapid surface drying, T1 and T2 showed moderate moisture persistence, and T3 maintained surface water. Leaf yellowing was observed after 25 days, suggesting possible nutrient limitation or reduced nutrient availability at the measured pH. These findings indicate that substrate physical characteristics influence early seedling growth performance, whereas pirapitinga RAS wastewater can serve as a viable nutrient source. Full article

Salt stress is one of the major environmental constraints in agriculture, significantly limiting crop yield and causing substantial economic loss worldwide. Silicon (Si) and selenium (Se) are widely recognized as beneficial elements for plants, and the application of Si- and Se-based fertilizers is considered a promising strategy for promoting crop growth and sustainable agricultural production under expanding salinization of arable land. In this study, aiming for the targeted application of Si and Se in agricultural production, the individual and synergistic effects of Si and Se on salt stress resistance in tomato when applied via root application or foliar spray were comprehensively investigated. Plant growth parameters, photosynthesis performance, oxidative damage, the activity of the antioxidant system, sodium/potassium (Na/K) content, and the expression of genes related to Na/K homeostasis were determined and further compared using principal component analysis (PCA). The results showed that salt stress markedly inhibited plant growth and photosynthetic performance, while inducing oxidative damage and disrupting Na/K homeostasis in tomato seedlings. In contrast, the application of both Si and Se significantly promoted tomato growth and ameliorated the detrimental effects of salt stress. Moreover, Si and Se exhibited a synergistic effect in promoting salt stress resistance under both root and foliar application. Root application of Si and Se is more effective in enhancing ionic homeostasis, while foliar spray of Si and Se is more effective in promoting photosynthesis performance under salt stress. Overall, considering the convenience and use-cost efficiency of Si and Se application in agricultural practices, the results of this study showed that the synergy application of Si and Se via foliar spray is most effective in promoting salt stress resistance in tomato through modulating photosynthesis performance, antioxidant capacity, and ionic homeostasis. Full article

In this study, the variation in chromium (Cr) and cadmium (Cd) concentrations in peppers, tomatoes, corn, eggplants, and cucumbers grown adjacent to the industrial area in Düzce, one of Europe’s most polluted cities and known for its high levels of potential toxic element (PTE) pollution, was determined based on species and organ. In addition, the concentrations of these elements in the soil were determined, and the translocation factor (TF) and bioconcentration factor (BCF) in the plant organs were calculated. The study found that Cr pollution, in particular, was well above threshold values in the region and accumulated to high concentrations in all plant organs, including fruits. The study found that soil Cr concentrations were well above the limit values set by international organizations. Cd concentrations in fruits ranged from 0.22 mg/kg to 0.33 mg/kg. Based on these results, Cd concentrations in all species exceed the limit values set by international standards by more than twice. The Cr concentration determined in fruits in the study ranged from 178.47 mg/kg to 579.80 mg/kg. According to these values, the Cr concentration determined in fruits is hundreds of times higher than the limit value in all species. TF values were high for Cd in tomato fruits and Cr in pepper and cucumber fruits. In contrast, TF values for both Cd and Cr were very low in corn fruits. Based on these results, cultivating crops such as tomatoes, cucumbers, and peppers should be avoided in the region, and corn should be emphasized. Thus, the rate of Cr and Cd entering the human body through the food chain can be reduced. Full article

Aminopyralid (2-pyridine carboxylic acid, 4-amino-3, and 6-dichloro-2-pyridine carboxylic acid) is an auxin herbicide widely used to control broad leaf weeds in pasture and hay fields. Aminopyralid compound in forage material can pass through livestock into manure. Composts derived from aminopyralid-contaminated manure can cause phytotoxic effects in sensitive crop plants. Biochar has shown synergetic effects in composting and can immobilize organic pollutants that present in compost. This experiment examined the effects of incorporating 0%, 2%, 4%, and 10% (w/w) biochar for composting dairy manure containing 50 µg kg⁻¹ aminopyralid (wet base) in 140 L plastic rotary drum reactors. Residual aminopyralid concentration after 2, 6, and 12 m composting periods, phytotoxicity effects of compost on tomato (Lycopersicon esculentum L.) plants, and the key chemical characteristics of composts after 6 and 12 m curing were assessed in two runs. After 12 months of curing, the aminopyralid concentration in the 10% biochar treatment decreased by more than 90% and eliminated the phytotoxicity of the compost. Improved adsorption and immobilization by biochar accounted for over 57% of the reduction in the 10% BC treatment. Biochar addition slightly increased the C/N ratio and total N content significantly but did not markedly impact the N transformation. The results indicate that biochar incorporation can be used as an effective practical tool to enhance the agronomic biosafety of bovine compost originated from persistent auxin herbicide aminopyralid-contaminated dairy manure. Full article