Search Results (2,560)

Urban expansion alters environmental conditions, influencing tree physiology and performance. Urban trees provide cooling, sequester carbon, support biodiversity, filter contaminants, and enhance human health. This study examines how two common urban trees—Norway Maple (Acer platanoides L.) and Little-leaved Linden (Tilia cordata Mill.)—respond to urban site conditions by assessing leaf morphology, stomatal, and gas exchange traits across street and urban park sites in Chicago, IL. Street trees exhibited structural trait adjustments, including smaller leaf area, reduced specific leaf area, and increased stomatal density, potentially reflecting acclimation to more compact and impervious conditions. Norway Maple showed stable photosynthetic assimilation (A), stomatal conductance (g_s), and transpiration (E) across sites, alongside higher intrinsic water-use efficiency (_iWUE), indicating a conservative water-use strategy. In contrast, Little-leaved Linden maintained A and g_s but showed elevated E and _iWUE at street sites, suggesting adaptive shifts in water-use dynamics under street microenvironments. These findings highlight how species-specific physiological strategies and local site conditions interact to shape tree function in cities and underscore the importance of incorporating functional traits into urban forestry planning to improve ecosystem services and climate resilience. Full article

Climate change continues to threaten global biodiversity, making it essential to assess how keystone species may shift their distributions and to use these findings to inform conservation planning. This study evaluated the current and future habitat suitability of D. macropodum, an important tree species within subtropical evergreen broad-leaved forests in China, using 354 occurrence records and a suite of environmental variables. A parameter-optimized MaxEnt model (calibrated with ENMeval; RM = 4, FC = QHPT) was applied to simulate the species’ present distribution and projected changes under three climate scenarios (SSP126, SSP245, SSP585). The main factors influencing distribution were determined to be moisture and temperature seasonality, with the precipitation of the coldest quarter (Bio19, 36.3%), the mean diurnal range (Bio2, 37.5%), and the precipitation of the warmest quarter (Bio18, 14.2%) jointly contributing 88.0% of the total influence. The model projections indicated a 40.1% reduction in the total number of suitable habitats under high-emission scenarios (SSP585) by the 2090s, including a loss of over 80% of highly suitable areas. Centroid movements also diverged across the scenarios: a southwestern shift under SSP126 and SSP245 contrasted with a southeastern shift under SSP585, with each accompanied by significant habitat fragmentation. Key climate refugia were identified primarily in central Taiwan Province and the mountainous zones of Zhejiang and Fujian Provinces, which should be prioritized for conservation activities. These insights offer a foundational understanding for the conservation of D. macropodum and other ecologically similar subtropical evergreen species. However, direct extrapolation to other taxa should be made cautiously, as specific responses may vary based on differing ecological tolerances and dispersal capacities. Further research is needed to test the generalizability of these patterns across diverse plant functional types. Full article

Tree peony is an important horticultural plant with both ornamental and oil value. The tree peony genome and databases were used to search for calmodulin family genes to explore their function in the pollination of tree peony. The CaM gene family was identified, and then the basic protein characteristics of the family members, such as gene structure, isoelectric point, molecular weight, subcellular localization, and conserved protein domain, were analyzed. The expression levels of these genes in the pistil tissue of Paeonia ostii ‘Fengdan’ at different developmental stages after pollination were also analyzed. Further, qRT-PCR was used to detect the expression levels of six PsCaMs during the development process of the pistil under bee pollination conditions. The results showed that there were six CaM family members located on three chromosomes and one non-chromosome. There were a large number of hormone response and stress response elements on the gene promoter of this family. During the development of pistil tissue after pollination, CaM family gene expression showed a trend of first increasing and then decreasing, which may be related to its function during pollination. The purpose of this study is to identify the gene characteristics and expression patterns of the CaM family during pollination, and to lay a foundation for the functional study of the CaM family in tree peony pollination. Full article

University campuses in rapidly urbanizing regions face increasing pressure to balance infrastructure development with environmental sustainability, yet their carbon storage potential remains largely unexplored in sub-Saharan Africa. This study assessed land use changes, carbon storage dynamics, and economic valuation across three Ghanaian universities, University of Ghana (UG), Kwame Nkrumah University of Science and Technology (KNUST), and University of Cape Coast (UCC), from 2017 to 2023, and evaluated five future scenarios using the InVEST carbon model. Land use analysis employed ESRI 10 m annual land cover data, while carbon storage was estimated using regionally appropriate carbon pool values, and economic valuation applied Ghana’s social cost of carbon ($0.970/tCO₂). Historical analysis revealed substantial carbon losses: UG declined by 17.1% (19,695 Mg C), KNUST by 29.5% (20,063 Mg C), and UCC by 7.9% (3292 Mg C), due to tree cover conversion to built areas. Scenario modeling demonstrated that infrastructure-focused development would cause additional losses of 4211–6891 Mg C, while extensive tree expansion could increase storage by 1686–5227 Mg C. Economic analysis showed tree expansion generating positive net present values ($1612–$5070), while infrastructure development imposed costs (−$4028 to −$6684). These findings provide quantitative evidence for sustainable campus planning prioritizing carbon conservation in tropical institutional landscapes. Full article

Seasonally dry tropical forests (SDTFs) are shaped by strong climatic and edaphic constraints, including pronounced rainfall seasonality, extended dry periods, and shallow karst soils with limited water retention. Understanding how tree species respond to these pressures is crucial for predicting ecosystem resilience under climate change. In the Yucatán Peninsula, we characterized sixteen tree species along a spatial and seasonal precipitation gradient, quantifying wood density, predawn and midday water potential, saturated and relative water content, and specific leaf area. Across sites, diameter classes, and seasons, we measured ≈4 individuals per species (n = 319), ensuring replication despite natural heterogeneity. Using a principal component analysis (PCA) based on individual-level data collected during the dry season, we identified five functional groups spanning a continuum from conservative hard-wood species, with high hydraulic safety and access to deep water sources, to acquisitive light-wood species that rely on stem water storage and drought avoidance. Intermediate-density species diverged into subgroups that employed contrasting strategies such as anisohydric tolerance, high leaf area efficiency, or strict stomatal regulation to maintain performance during the dry season. Functional traits were strongly associated with precipitation regimes, with wood density emerging as a key predictor of water storage capacity and specific leaf area responding plastically to spatial and seasonal variability. These findings refine functional group classifications in heterogeneous karst landscapes and highlight the value of trait-based approaches for predicting drought resilience and informing restoration strategies under climate change. Full article

The European sweet chestnut (Castanea sativa Mill.) is an ecologically and culturally significant forest tree species in Croatia; however, its genetic diversity and population structure remain insufficiently characterized. This study aimed to evaluate the genetic diversity, structure, and connectivity of chestnut populations on Zrin Mountain, the country’s largest continuous chestnut area. Using seven nuclear SSR markers, we genotyped 153 individuals from three populations (PET, HRK, and BAC). All populations exhibited moderate genetic diversity (mean He = 0.571), with BAC showing the highest allelic richness and number of private alleles. AMOVA revealed that most genetic variance (67%) occurred among individuals, while population differentiation was low to moderate (FST = 0.064; PhiPT = 0.146), consistent with high inferred gene flow (Nm = 7.48). Both STRUCTURE and PCoA indicated that HRK was the most genetically distinct population, whereas PET and BAC were more similar. Overall, these findings demonstrate substantial gene flow and connectivity among Croatian chestnut populations, providing a foundation for sustainable management and conservation strategies in a broader European context. Full article

Hakka traditional vernacular dwellings embody regionally specific climatic adaptation strategies. This study takes the Meizhou Guangludi enclosed house as a case study to evaluate its climate adaptability with longevity and passive survivability factors of the Hakka three-hall enclosed house under subtropical climatic conditions. A mixed research method is employed, integrating visualized parametric modeling analysis and on-site measurement comparisons to quantify wind, temperature, solar radiation/illuminance, and humidity, along with human comfort zone limits and building environment. The results reveal that nature erosion in the Guangludi enclosed house is the most pronounced during winter and spring, particularly on exterior walls below 2.8 m. Key issues include bulging, spalling, molding, and fractured purlins caused by wind-driven rain, exacerbated by low wind speeds and limited solar exposure, especially at test spots like the E8–E10 and N1–N16 southeast and southern walls below 1.5 m. Fungal growth and plant intrusion are severe where surrounding trees and fengshui forests restrict wind flow and lighting. In terms of passive survivability, the Guangludi enclosed house has strong thermal insulation and buffering, aided by the Huatai mound; however, humidity and day illuminance deficiencies persist in the interstitial spaces between lateral rooms and the central hall. To address these issues, this study proposes strategies such as adding ventilation shafts and flexible partitions, optimizing patio dimensions and window-to-wall ratios, retaining the spatial layout and Fengshui pond to enhance wind airflow, and reinforcing the identified easily eroded spots with waterproofing, antimicrobial coatings, and extended eaves. Through parametric simulation and empirical validation, this study presents a climate-responsive retrofit framework that supports the sustainability and conservation of the subtropical Hakka enclosed house. Full article

The wild yak (Bos mutus) is a flagship species on the Qinghai–Tibet Plateau, possessing significant ecological functions and conservation value. Using single-nucleotide polymorphism markers from whole-genome resequencing, we systematically analyzed golden wild yak (n = 37), common wild yak (n = 106), and domestic yak (Bos grunniens) (n = 20) to characterize the population genetic structure and adaptive selection signals in the golden wild yak. Genetic diversity analyses revealed that the golden wild yak had the lowest nucleotide diversity (π = 0.00148) and the highest inbreeding coefficient (F_Hom = 0.043). Population structure analyses integrating principal component analysis, phylogenetic tree, and ancestral component clustering indicated that the golden wild yak formed a relatively independent evolutionary lineage. However, its genetic differentiation from sympatric common wild yak population was limited (fixation index = 0.031). Selective sweep analysis identified a set of candidate positively selected genes in the golden wild yak genome associated with key traits and physiological functions, including coat color (TYRP1), hypoxia adaptation (MYH11, POLQ), reproductive function (SLC9C1, SPAG16, CFAP97D1), and immune response (CASP8, PGGT1B, BIRC6). Overall, our study reveals a distinct genetic background and selection signatures in the golden wild yak and provides genomic insights to inform the conservation and management of the wild yak. Full article

Despite the increasing recognition of the role of urban orchard ecosystems in sustainable urban development, the mechanistic understanding of how tree species soil biochemical heterogeneity drives microbial community assembly, the spatial patterns governing microbe-environment interactions, and their collective contributions to ecosystem multifunctionality remain poorly characterized. This study investigated how Prunus species and soil depth affect microbial biodiversity and metabolomic signatures in an urban orchard in Cluj-Napoca, Romania. Soil samples were collected from five fruit tree species (apricot, peach, plum, cherry, and sour cherry) across three depths (0–10, 10–20, and 20–30 cm), resulting in 225 samples. The microbial community structure was analyzed through phospholipid fatty acid (PLFA) profiling, whereas the soil metabolome was analyzed by mass spectrometry techniques, including gas chromatography–mass spectrometry (GC–MS/MS) and MALDI time-of-flight (TOF/TOF) MS, which identified 489 compounds across 18 chemical classes. The results revealed significant tree species-specific effects on soil microbial biodiversity, with bacterial biomarkers dominating and total microbial biomass varying among species. The soils related to apricot trees presented the highest microbial activity, particularly in the surface layers. Metabolomic analysis revealed 247 distinct KEGG-annotated metabolites, with sour cherry exhibiting unique organic acid profiles and cherry showing distinctive quinone accumulation. Depth stratification influenced both microbial communities and metabolite composition, reflecting oxygen gradients and substrate availability. These findings provide mechanistic insights into urban orchard soil biogeochemistry, suggesting that strategic species selection can harness tree species-soil microbe interactions to optimize urban soil ecosystem services and enhance urban biodiversity conservation. Full article

(1) Studying changes in plant composition and diversity of Pinus pumila communities along the elevation is significant for biodiversity conservation; (2) In this study, we systematically analysed Pinus pumila communities’ species composition and diversity characteristics on different altitudinal gradients in the Zalinkur Mountains, aiming to reveal their distribution patterns along the altitudinal gradient. (3) ① 37 plant species were recorded, including 9 trees, 12 shrubs, and 16 herbs. The species richness was in the order of herbs > shrubs > trees. ② The α-diversity of the tree layer decreased with elevation. The diversity of the shrub and herb layers decreased and then increased with elevation; (4) Elevation is an important ecological factor affecting the plant diversity of Pinus pumila communities in Zalinkur Mountain, playing a dominant role in the formation and maintenance of plant diversity on Zalinkur Mountain. Full article

Diaphorobacter nitroreducens is a Gram-negative bacterium ubiquitously found in wastewater, recognized for its ecological adaptability and potential applications in environmental, biomedical, and industrial processes. Central to its adaptability is the nfrB gene, which encodes a cyclic di-3′,5′-guanylate (c-di-GMP)-activated glycosyltransferase. This enzyme facilitates the secretion of biofilm-associated extracellular polymeric substances (EPS), essential for its survival and functionality in diverse environments. Using complete EMJH media as a selective medium, D. nitroreducens was successfully isolated from soil and water samples from Estero de Paco, Manila, Philippines, enabling downstream analyses of its nfrB gene. Phylogenetic analyses revealed that the nfrB gene tree deviates significantly from the canonical 16S rRNA gene tree, with D. nitroreducens clustering alongside members of the Enterobacteriaceae family. This deviation suggests the potential influence of horizontal gene transfer, adaptive evolution, or lineage-specific pressures on nfrB evolution. Structural analysis of NfrB through Alphafold 3 prediction demonstrated a conserved N-terminal region across taxa, except for the outgroup Zymomonas mobilis. Conversely, the C-terminal region, housing the catalytic domain, showed considerable diversity, reflecting adaptive modifications across bacterial lineages. Despite this variability, the putative binding site for cyclic di-3′,5′-guanylate remained conserved, indicating a balance between functional conservation and adaptive diversification. These findings not only deepen the existing understanding of bacterial signaling and glycosylation mechanisms but also provide insights into the evolutionary dynamics of glycosyltransferases. Furthermore, the study underscores the potential of NfrB as a target for innovative applications, including the design of novel biocatalysts and the development of informed strategies for bacterial management in environmental, industrial, and biotechnological contexts. Full article

Host phylogeny can imprint the gut microbiota, but it is often masked by diet and environment. Leveraging the standardized husbandry of a zoological collection, we profiled fecal microbiota from 55 captive artiodactyls representing 12 species in Bovidae, Cervidae, and Camelidae using 16S rRNA amplicon sequencing targeting the V3–V4 region on the Illumina MiSeq platform. Community composition differed significantly among host families (Bray–Curtis PERMANOVA, R² = 0.1075, p = 0.001). A host–microbiota tanglegram, which juxtaposes the host phylogeny with a dendrogram of microbiota similarity, recovered a topology congruent with the host phylogeny, with camelids forming a distinct branch separate from true ruminants in both trees. The linear discriminant analysis effect size (LEfSe; LDA ≥ 3.5) identified family-specific biomarkers, including enrichment of Acinetobacter/Moraxellaceae in Bovidae, Rikenellaceae (the Rikenellaceae_RC9_gut_group) in Cervidae, and Rummeliibacillus together with the Christensenellaceae_R-7_group in Camelidae. Functional inference with PICRUSt2 revealed significant differences in KEGG level-2 pathways (e.g., carbohydrate metabolism and xenobiotics biodegradation), consistent with taxonomic shifts. Altogether, these findings show that—even under uniform captive conditions—host evolutionary history remains a primary determinant of both the structure and the predicted functions of the artiodactyl gut microbiota, refining the scope of phylosymbiosis and providing actionable baselines for veterinary monitoring and conservation management in zoo settings. Full article

Prosopis cineraria (L.) Druce is a keystone tree species in the arid and semi-arid regions of West and South Asia, with critical ecological, cultural, and conservation significance. In the United Arab Emirates (UAE) and other regions of the Arabian Peninsula, this beneficial tree is called Ghaf. Despite its importance, genomic resources and population-level diversity data for the tree remain limited. Here, we present the first comprehensive population genomics study of Ghaf based on whole-genome resequencing of 204 individual trees collected across the UAE. Following Single-Nucleotide Polymorphism (SNP) discovery and stringent filtering, we analyzed 57,183 high-quality LD-pruned SNPs to assess population structure, diversity, and gene flow. Principal component analysis (PCA), sparse non-negative matrix factorization (sNMF), and discriminant analysis of principal components (DAPC) revealed four well-defined genetic clusters, broadly corresponding to geographic origins. The genetic diversity varied significantly among the groups, with observed heterozygosity (Ho), inbreeding coefficients (F), and nucleotide diversity ($\pi$) showing strong population-specific trends. Genome-wide fixation index F_ST scans identified multiple highly differentiated genomic regions, enriched for genes involved in stress response, transport, and signaling. Functional enrichment using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Pfam annotations indicated overrepresentation of protein kinase activity, ATP binding, and hormone signaling pathways. TreeMix analysis revealed gene flow into one of the genetic clusters from both others, suggesting historical admixture and geographic connectivity. This work provides foundational insights into the population genomic profile of P. cineraria, supporting conservation planning, restoration strategies, and long-term genetic monitoring in arid ecosystems. Full article

The Flaviviruses Dengue virus (DENV), West Nile virus (WNV), Zika virus (ZIKV), and Yellow Fever virus (YFV), are mosquito-borne viruses that represent a persistent challenge to global health due to the emergence and re-emergence of outbreaks of significant magnitudes. Their positive-sense RNA genome, about 11,000 nucleotides long, encodes structural and nonstructural proteins. These viruses evolve rapidly through mutations and genetic recombination, which can lead to more virulent and transmissible strains. Although whole-genome sequencing is ideal for studying their evolution and geographic spread, its cost is a limitation. We investigated the genetic variability of DENV, ZIKV, WNV, and YFV to identify genomic regions that accurately reflect the phylogeny of the complete coding sequence and evaluated the utility of these regions in reconstructing the geographic dispersal patterns of viral genotypes and lineages. Publicly available sequences from GenBank were examined to assess variability, reconstruct phylogenies, and identify the most informative genomic regions. Once representative regions were identified, they were used to infer the global phylogeographic structure of each virus. The virus depicted distinct variation patterns, but conserved regions of high and low variability were common to all. Highly variable regions of ~2700 nt offered greater resolution in phylogenetic trees, improving the definition of internal branches and statistical support for nodes. In some cases, combined multiple highly variable regions enhanced phylogenetic accuracy. Phylogeographic reconstruction consistently grouped sequences by genotype and geographic origin, with temporal structuring revealing evolutionarily distinct clusters that diverged over decades. These findings highlight the value of targeting genomic regions for phylogenetic and phylogeographic analysis, providing an efficient alternative for genomic surveillance. Full article

Phytoplasmas (‘Candidatus Phytoplasma’) are intracellular pleomorphic plant pathogens belonging to the class Mollicutes. They colonize both plant hosts and insect vectors in their life cycle. Apple proliferation (AP) is one of the most important phytoplasmoses present in Europe, causing significant economic losses in apple production. The causal agent, ‘Ca. P. mali’, was identified in apple and Cacopsylla picta samples using both real-time PCR and nested PCR based on the amplification of 16S rDNA. The objective of this study was to gain deeper insights into the epidemiology of apple proliferation in Croatia. Variability of genetic markers other than 16S rRNA was used for characterization of strains. Four molecular markers differing in level of conservation, aceF, pnp, imp, and secY, were selected in line with previously typed fruit tree phytoplasmas. New genotypes were discerned for each genetic marker, and 20 different sequence types were revealed in the Croatian strains of ‘Ca. P. mali’. On the basis of this comprehensive analysis, the founder sequence type ST1 (A13–P10–S12–I21) can be proposed. This is the first extensive research and multigene typing performed on Croatian ‘Ca. P. mali’ strains. Obtained results reveal considerable genetic diversity of epidemiological relevance limited to only two locations in north-western Croatia. Additionally, novel primers were constructed to amplify fragments larger than the entire coding region for all four genes in order to further expand the phytoplasma multi-locus sequence typing scheme. Full article