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Review

Korean Wild Soybeans (Glycine soja Sieb & Zucc.): Geographic Distribution and Germplasm Conservation

1
Department of Biotechnology, Chonnam National University, Yeosu 59626, Korea
2
Education and Scientific Center of Nanotechnology, Far Eastern Federal University, 690950 Vladivostok, Russia
3
Center of Soybean Research, State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong 999077, China
4
Department of Health Policy and Management, Wonkwang University, Iksan, Jeonbuk 54538, Korea
5
Division of Food and Nutrition, Chonnam National University, Gwangju 61186, Korea
6
Department of Horticulture, Faculty of Agriculture, Ataturk University, 25240 Erzurum, Turkey
7
Pacific Institute of Geography, Far Eastern Branch of the Russian Academy of Sciences, 6900041 Vladivostok, Russia
8
N.I. Vavilov All-Russian Institute of Plant Genetic Resources, 42 Bolshaya Morskaya St., 44, 190000 St. Petersburg, Russia
*
Authors to whom correspondence should be addressed.
Agronomy 2020, 10(2), 214; https://doi.org/10.3390/agronomy10020214
Submission received: 24 December 2019 / Revised: 26 January 2020 / Accepted: 1 February 2020 / Published: 2 February 2020

Abstract

:
Domesticated crops suffer from major genetic bottlenecks while wild relatives retain higher genomic diversity. Wild soybean (Glycine soja Sieb. & Zucc.) is the presumed ancestor of cultivated soybean (Glycine max [L.] Merr.), and is an important genetic resource for soybean improvement. Among the East Asian habitats of wild soybean (China, Japan, Korea, and Northeastern Russia), the Korean peninsula is of great importance based on archaeological records, domestication history, and higher diversity of wild soybeans in the region. The collection and conservation of these wild soybean germplasms should be put on high priority. Chung’s Wild Legume Germplasm Collection maintains more than 10,000 legume accessions with an intensive and prioritized wild soybean germplasm collection (>6000 accessions) guided by the international code of conduct for plant germplasm collection and transfer. The center holds a library of unique wild soybean germplasms collected from East Asian wild habitats including the Korean mainland and nearby islands. The collection has revealed interesting and useful morphological, biochemical, and genetic diversity. This resource could be utilized efficiently in ongoing soybean improvement programs across the globe.

1. Introduction

Soybean (Glycine max [L.] Merr.) is an economically important legume worldwide with diverse applications in food, feed, and biofuel industries [1,2]. Increasing per capita food consumption and limited land and water resources, coupled with a growing population and changing dietary habits, are projected to escalate the pressure on global food supplies [3,4]. It is estimated that food consumption is growing faster than production, particularly in Asia, which will lead to grain and soybean deficits. This deficit in food supply must be addressed through a global effort. Additionally, the global climate change, together with the above-mentioned factors, has outpaced the forecasted crop yields, while at the same time having a negative effect on the state of diversity in the farmer’s field [5]. To alleviate negative effects due to climate change on crops and ecosystems and to increase crop yields, the resilience and sustainability of current agricultural systems have become pressing issues [6]. The development of new soybean varieties and cropping systems with the ability to adapt to a changing environment and new socio-economic conditions is crucial for yield enhancement. While the genetic improvement of crops plays an important role, the genetic base of major crops is narrow, due to genetic bottlenecks and human selection [7]. Therefore, it is essential to investigate novel sources of genetic diversity and to expand gene pools by exploiting crop wild relatives (CWRs) [8,9,10]. The search for novel genetic diversity will result in an increased demand for novel breeding material from the world’s gene banks.
The wild (Glycine soja Sieb. & Zucc.) and cultivated (G. max) soybeans are both annual plants belonging to one of the two subgenera of the genus Glycine, and are distinguished from other wild perennial Glycine species. It has been shown that wild soybean can be used in the genetic improvement of cultivated soybean [11].
The taxonomic and phylogenetic knowledge based on the concept of gene pools provides important information for wild x cultivated soybean hybridization. The primary gene pool (GP-1) includes G. max and its wild progenitor, G. soja, resulting in the production of vigorous hybrids, normal meiotic chromosome pairing, and fertile offspring. As far as secondary (GP-2) and tertiary (GP-3) gene pools of G. max are concerned, all the 26 perennial species are included in GP-3, while no Glycine species has been found in GP-2 [11]. Some researchers have previously attempted to hybridize G. max with five GP-3 member species, but their success was limited [12]. Among GP-3 members, only three perennial species (Glycine argyrea, Glycine canescens, and Glycine tomentella) have been successfully hybridized with cultivated soybean. The F1 hybrids were either sterile or could not develop beyond the amphidiploid stage [13]. Further information could be found in the paper by Singh ([14] and references therein).
Wild soybean accessions, the wild relatives of cultivated soybean, are mainly found in East Asia [15]. They harbor abundant and unique gene/allele resources, due to their widespread distributions in complex geographic topographies with diverse microclimates [16]. Cultivated soybeans have lower adaptive potential to climatic changes and reduced genetic diversity when compared to wild soybeans [3,17]. More than half of the genetic variations in soybean were lost due to habitat fragmentation and genetic bottlenecks [18]. Therefore, wild soybeans are important genetic resources for gaining a deeper understanding of the genetic diversity, genomic variations, and environmental adaptations of soybean [10,19].
Preliminary assessments of germplasm conservation in many parts of the world have revealed substantial gaps, which should be filled by expanding the collection of wild soybean germplasm resources from the main distribution areas [20,21]. Such efforts are being adopted by many countries and germplasm centers around the globe, including Korea, which is one of the main distribution areas of wild soybeans.

2. Role of Wild Soybean in Soybean Improvement Programs

While the members of the GP-3 gene pool are of limited use in soybean breeding programs, wild soybean offers a great potential for providing novel genes/alleles. Resequencing and comparative genomics of wild and cultivated soybeans and landraces have identified higher allelic diversity in wild soybean [17,22]. Recently, a high-quality reference genome for wild soybean has been completed to provide an important tool for exploring the gene/allele resources in wild soybean [23]. Many useful QTLs/genes have been identified by characterizing wild soybean or using genetic populations resulting from crosses between wild and cultivated soybeans [10,23,24]. These QTLs/genes are useful in improving biotic and abiotic stress tolerance, as well as enhancing the yield and quality of soybean.
For example, the stacking of QTLs from both wild and cultivated soybeans was applied to increase the resistance against soybean cyst nematode (SCN) [25]. Using a genome-wide association study (GWAS) in combination with RNA-Seq analysis, the genetic architecture and gene regulatory networks of SCN resistance were delineated [26,27]. In response to environmental changes, genes and transcription factors identified from wild soybean have been reported to enhance drought stress tolerance via the regulation of the abscisic acid signaling pathway [28]. In addition, a salt tolerance gene was identified from wild soybean using a combination of whole-genome de novo sequencing, QTL mapping by resequencing-based high-density markers, and functional studies [24].
Wild soybeans are also genetic resources for yield improvement and nutritional enhancement. For instance, the whole-genome resequencing of a recombinant inbred line population has identified a protein phosphatase 2C-1 (PP2C-1) allele from the wild soybean ZYD7. This allele appeared to regulate seed weight and seed size [29]. Furthermore, using the whole-genome shotgun (WGS) approach, 29 SNPs located in 10 different wild soybean chromosomes were found to be associated with seven seed composition traits [30]. Wild soybean is also a valuable genetic resource for the enhancement of isoflavone contents in the soybean seed through conventional breeding and modern biotechnological techniques [31]. Many genes involved in the soysaponin biosynthetic pathway have been identified in wild soybean [32], including the newly discovered Sg-5 gene, which is responsible for soysaponin A biosynthesis [33,34]. A summary of the traits identified and/or characterized in wild soybean by screening or hybridization with cultivated soybean is given in Table 1 [modified from 1,10,14]. While the introgression from G. soja has resulted in many useful traits, it may also result in linkage drag and introduce unwanted traits such as vining, susceptibility to lodging, lack of complete leaf abscission, hard seed coat, pod bursting, and seed shattering. Rapid progress in biotechnology involving genetic transformation and genome editing might be useful for circumventing these obstacles [1].

3. Recent Studies on Genome-Wide Patterns of Genetic Diversity in Wild Soybean

Recent developments in high-throughput next-generation sequencing techniques such as whole-genome sequencing and DNA microarrays have enabled large-scale molecular variation studies [18]. These advancements enable soybean researchers to explore the domestication-related traits and to understand how genome-wide genetic variations were shaped by domestication. The first whole-genome sequence of Korean wild soybean (IT182932) was completed by Kim et al. [35], showing that the G. soja/G. max complex might be 0.27 million years old, dating back much earlier than the more recent event of soybean domestication (6000–9000 years ago). Another study used nine cultivated and five wild Korean soybean accessions in a resequencing approach to assemble unmapped reads to contigs [36]. In-depth genomic mining of wild soybean will be expedited by the recent release of a reference-grade wild soybean genome by our group [23]. Following the study by Chung et al. [36], a resequencing of semi-wild soybeans reported a hybridization origin, revealing a complex G. soja population structure and introgression [37]. Li et al. [38] reported the construction and analysis of a pan-genome of wild soybean based on sequencing and de novo genome assembly. Two other notable studies have also employed a whole-genome resequencing approach to identify the patterns of genetic diversity and selection in wild and cultivated soybeans [17,22]. Lam et al. [22] resequenced a total of 14 cultivated and 17 wild soybean genomes with >90% genome coverage, and identified a higher allelic diversity among wild soybean genomes relative to the cultivated ones. Human selection, coupled with genetic bottlenecks, has reduced the genetic diversity of cultivated soybean to nearly half of that of the wild soybean. In another study [17], resequencing was performed in 302 wild and cultivated soybean accessions including landraces. A total of 230 selective sweeps and 162 copy number variants were reported. GWAS revealed associations between 10 selected genomic regions and nine domestication-related traits.

4. Distribution and Conservation of Wild Soybean in Korea

4.1. Geographical Distribution of Wild Soybean in Korea

Wild soybean grows in moist habitats from 0 to 2650 MASL (meters above sea level), spanning subtropical and subarctic zones (between 24° N and 53° N latitude) [16], and is restricted to East Asia. Occasionally, it can also be found in dry and salt-affected areas. In the Korean peninsula, wild soybeans are distributed throughout the mainland as well as on nearby islands. They can be found growing almost everywhere in Korea, including farmlands, roadsides, and river banks, and from mountain tops to deep valley bottoms. There are over 3000 islands off the coast of the Korean peninsula and nearly 400 are inhabited. A few of these inhabited islands have already been surveyed for wild soybean distribution [77].

4.2. Archaeological Records and Background

Despite the importance of soybean to the world economy, the history of soybean has been mostly restricted to phylogenetics and historical documents mentioning the domestication of soybean in East Asia. G. soja is the only wild member of the subgenus Soja native to the East Asian countries mentioned above [15,78]. Many reports suggest that soybean was first domesticated in China around 5000 years ago, but this statement is still controversial [79]. However, it is generally agreed that the ancient geographical region comprising China, Japan, and Korea (the CJK region) harbored one of the three pioneering societies to domesticate and cultivate this important legume [80]. In an attempt to rectify the domestication history of soybean, Lee et al. [81] pointed out that the differences between domesticated plants and their wild relatives/progenitors are not always clear, and therefore it is sometimes impossible to discern between wild and domesticated soybean in archaeological specimens which are not always well preserved. Despite their different appearances and growing conditions, cultivated soybean plants can cross breed with wild soybean plants and produce fertile F1 hybrids, making it quite challenging to understand and interpret the archaeological seed records [11]. There is still an ongoing debate over the archaeological records in southeastern Korea and China ([81] and references therein).
Figure 1 shows the archaeological sites in Korea. The Nam River valley contains multiple sites, e.g., Oun 1, Okbang 1, 2, 4, 6, 9, Sangchon B, and Pyeonggeodong, dating back to the Chulmun (8000~3500 CAL. B.P.), Mumun (~3500-2000 CAL. B.P.), and Three Kingdom Periods (2000~1200 CAL. B.P.). Other sites include Daundong in Ulsan and Dongsamdong shell midden in Busan. A detailed examination and comparison of archaeological seed records showed that the morphology of the seeds in the Korean soybean archaeological records resembles that of smaller domesticated varieties in more modern times [81,82] because there is a range of seed morphologies among soybean cultivars with ovate seeds. However, the report is based on archaeobotanical seed size measurements. A genomic approach could be more rewarding in terms of species identification. Another report [82] did not mention wild soybean in Korean flotation samples at all. Due to a higher number of landraces, as well as the presence of wild soybean in the area, the authors were not able to link any archaeological findings to a particular species (most probably G. max) or a soybean landrace. However, these studies confirm that the Korean peninsula is a region of great importance for early soybean domestication.

5. Korea: A Region of High Wild Soybean Diversity

Wild soybean propagates by self-pollination with a limited outcrossing potential (2.4–19%) [84]. Short-distance dispersal is attributed to pod dehiscence while long-distance dispersal may occur via migratory birds, water, and mammals [85]. During the interglacial cycle, wild soybean survived in multiple cryptic refugia (at least two refugia have been inferred: one in Northeast Asia including the Korean peninsula, and another in the Yangtze River basin) in its native habitats (the CJK region) [86]. The geographical distribution is characterized by three climatic zones, i.e., subtropical, warm temperate, and cool temperate zones. Such a wide distribution area, with a temperature range of at least 20 °C, requires that wild soybean be able to adapt to a wide range of growing conditions [87]. The Korean peninsula was one of the wild soybean refugia. Owing to its geographical location in the West Pacific, as well as to periodic warm/wet and cold/dry spells during the Quaternary Period, a rich wild soybean diversity is expected to be present in this region [86]. It has been reported that wild soybean is distributed across the entire Korean mainland territory and nearby islands [77].
Archaeological records suggest that wild soybean could have been present in Korea for more than 5000 years (as discussed above in Section 4.2). Many studies based on molecular markers, agronomic characteristics, and isozymes reported that Korean wild soybean is rich in genetic diversity [88,89,90,91,92,93]. Based on the protein Kunitz trypsin inhibitor variations in 172 wild soybeans, it is proposed that Korea should be regarded as a subcenter of soybean diversity [89]. Based on microsatellite markers in the Korean wild soybean, a high genetic diversity index was obtained, supporting previous reports [94,95,96]. A chloroplast microsatellite-based study of 604 wild soybean accessions from 43 locations across China, Japan, and Korea suggested that Korea may be a subcenter of diversity. However, nuclear microsatellite markers revealed that the Yangtze River basin in China had the highest genetic diversity [97].
The wild soybean populations growing on the islands off the Korean peninsula have a much higher risk of extinction, compared to the mainland populations. The risk factors include the accumulation of different mutations, adaptation to the microenvironment of a particular island, loss of genetic diversity, and inbreeding [98,99,100]. In this regard, there is a greater urgency to collect and conserve as many wild soybean germplasms as possible from the islands. Lee et al. [77] studied the genetic diversity of wild soybean accessions collected from 24 inhabited islands and reported that these accessions showed a similar degree of genetic diversity to that among the mainland accessions. It was thus concluded that, regardless of the collection site, i.e., mainland versus island habitats, the genetic diversity in Korean wild soybean is high, meaning that the Korean wild soybean accessions from connected as well as small isolated regions are equally important wild genetic resources, and their conservation programs should be of equally high priority.

6. Collection of Wild Soybean Germplasm in Korea

The second report on the state of the world’s plant genetic resources for food and agriculture stated that public awareness of the importance of crop diversity and the use of CWRs is growing in both developing and developed countries. A 20% increase in the number of global accessions conserved ex situ has been observed since 1996. Major ex situ soybean collections are reported to be present in China, Russia, Ukraine, and the United States of America, with a total of 229,944 accessions. However, 23% of the total collection is held by only two organizations, i.e., the Institute of Crop Germplasm Resources at The Chinese Academy of Agricultural Sciences (ICGR-CAAS) and SOY (USA) [5]. Among these soybean germplasm collections, the majority of the wild accessions are held by organizations in China, USA, Korea, Japan, and Russia (Table 2). According to the second report on plant genetic resources, there has been a significant increase in nationally designated protected areas since 1928. However, the report did not include priority genetic reserve locations for wild soybean relatives. The most likely reason for the omission is that this report based its information on another report by Maxted and Kell which focused only on 12 major food crops, excluding soybean [101]. A recent report on global conservation priorities classified soybean wild relatives as medium priority [21]. This classification is based on the consideration given to the situations of all food crops. Therefore, a classification system based solely on the rankings within legumes or oilseeds could help advocate for a higher priority for conserving wild soybean.
Wild soybean, being able to hybridize with cultivated soybean, becomes an extended source of diversity to broaden the gene pool [11]. The utilization of wild soybean is expected to increase as a result of ongoing improvements in the information on the species’ genome and genetic diversity, and advances in breeding tools [21]. This expectation is based on the assumption that the wild accessions will be readily available for research and soybean breeding, which requires their conservation as germplasms in gene banks. Urbanization, road construction, deforestation, intensive agriculture, climate change, and soil erosion are all threatening wild soybean in its natural habitats. Since wild soybean is mainly distributed in the CJK region, greater conservation efforts should be made by the local authorities in charge of biological conservation in these countries. In East Asia, major wild soybean germplasm centers in these three countries include the Chinese Crop Germplasm Information System, in China, the National Institute of Agrobiological Sciences Genebank and the Legume Base, in Japan, and the National Agrobiodiversity Center and the Chung’s Wild Legume Germplasm Collection (CWLGC) (described in this work), in Korea. In Korea, there are >6000 accessions in CWLGC and 3229 accessions at the National Agrobiodiversity Center.
Soybean breeding in Korea started in the early 1900s and, since then, more than 178 varieties/cultivars have been registered. Major soybean breeding work has been completed in the past three decades, particularly after the establishment of the National Agrobiodiversity Center in 1987 [102]. Cultivated soybean has received greater attention regarding germplasm collection when compared to wild soybean. This is quite logical because most of the germplasm centers were busy collecting, breeding, and documenting major crops during their early establishment. However, the recent trend of utilizing CWRs in breeding and preliminary assessments of the comprehensiveness of the conservation of CWRs in gene banks have reported substantial gaps [21]. A report by FAO on the state of diversity indicated that the number of accessions of CWRs has substantially increased since 1996. However, they are still under-represented [5]. Considering this scenario, as well as the limited number of wild soybean accessions collected from Korea, large-scale individual as well as collective efforts are needed to enhance wild soybean collections. Although information is available about the conservation status of this species in Korea, lack of information and access to wild soybean in North Korea is a big limitation. Table 3 details the conservation efforts by the CWLGC in Korea, placing its major focus on wild soybean collection.

6.1. Chung’s Wild Legume Germplasm Collection

Founded by Professor Gyuhwa Chung in 1983 and located in the Yeosu campus of the Chonnam National University, the CWLGC now possesses the most comprehensive collection of wild soybean in Korea. Guided by the international code of conduct for plant germplasm collecting and transfer (http://www.fao.org/3/x5586e/x5586e0k.htm), the main focus of this center is on the direct collection, acquisition, conservation, evaluation, characterization, documentation, and distribution of wild legume germplasms. CWLGC followed the guidelines of the National Agrobiodiversity Center, Genebank of Rural Development Administration, Korea, and became a local sub-bank in 2007. The list of species and the respective number of accessions available at CWLGC is shown in Table 3. The wild legume accessions were directly collected by the CWLGC team from Korea, Japan, China, and Russia, or acquired from Australia, India, Taiwan, and Zambia. The wild soybean collections include 5050 accessions originating from Korea.

6.2. In situ Conservation of G. soja at CWLGC

In the last 30 years, a major effort at CWLGC has been dedicated to wild soybean germplasm collection, acquisition, development, and characterization. In situ wild soybean germplasm propagation and characterization at CWLGC is done throughout the year and is ongoing. About 500-1000 accessions/year are propagated and characterized at two outdoor planting and propagation sites: Yeosu (Chonnam Province) and Jinju (Gyeongsangnam Province) (Figure 2).
One important feature of CWLGC is that it holds wild soybean accessions collected from ~130 islands along the coast of the Korean peninsula. These accessions could be used to address questions related to the adaptations to microclimatic conditions in geographically isolated areas. With increasing land exploitations by humans and decreasing wild soybean habitats in Korea, CWLGC is focusing on extensive surveys and germplasm collections. The germplasm characterization performed at CWLGC has revealed interesting and useful morphological and biochemical variations. Examples of the morphological diversity in leaf shape and root architecture are shown in Figure 3.
The germplasm collection at CWLGC exhibits high genetic and morphological variations [77,81]. For instance, microsatellite marker-based genetic diversity has been investigated in the wild soybean at CWLGC that originated from the southern islands of Korea. Five hundred and thirty wild soybean accessions originating from China, Japan, and Korea included in the CWLGC have also been utilized for the successful identification of GmSALT3 haplotypes and the development of molecular markers related to salt tolerance [103].
Moreover, the CWLGC germplasms were studied for their natural variations in saponin contents and were used to help identify different group-A acetylsaponin-deficient mutants [32,104,105,106]. The wild soybean soyasaponin mutants from CWLGC have been used to identify and characterize the genes involved in the saponin biosynthesis pathway, e.g., Sg-1 locus (CWS2133), sg-5 locus (CWS5095), and Sg-6 locus [33,105,107,108,109]. In addition to saponins, wild soybean accessions at the CWLGC have also been screened for the presence of Kunitz trypsin inhibitor polymorphism, alpha-linolenic acid concentration, and soyisoflavone profile diversity [110,111,112,113]. Furthermore, the germplasms have been used to functionally characterize two seed-specific flavonoid glycosyltransferases and a β-amyrin synthase gene [109,114].
Another interesting discovery using the CWLGC collection is the identification of the W1 locus and the analysis of four new alleles at this locus associated with flower color in soybean [40]. A complete range of flower color has been observed in the CWLGC wild soybean collection and different flower color variants have been studied to help understand the genetic and molecular basis of flower color e.g., the pinkish-white flowers of accession CW13133 [39] (Figure 4).
Being a major source of plant oils and proteins, the demand for soybean is escalating. Soybean yield has been significantly increased since the 1960s and is forecasted to reach 3.0 metric tonnes per hectare in 2028. It was observed that soybean yields in East Asian countries have been stagnant for some time. To meet the projected demands, it is important to consider breeding soybean cultivars with higher yield potentials and better tolerance to biotic and abiotic stresses. Wild soybean has been shown to provide an important resource for soybean breeding in terms of nutrition, biotic and abiotic stress tolerance, and yield-related traits (Table 1).
So far, only a few characteristics of wild soybean contained in the CWLGC have been explored. Phenotypic screening towards biotic and abiotic resistance under diverse climate conditions would reveal more relevant results to meet current needs. In this regard, the CWLGC G. soja collection has been initially explored for the diversity in root system architecture (Figure 3b). Regarding biotic stress tolerance, no screening has yet been done, leaving the opportunity open for researchers interested in disease and insect pest resistance. Soybean cyst nematode, soybean mosaic virus, bacterial blight and wilt, and a whole list of fungal diseases could be the initial screening targets. Furthermore, early emergence and vigor traits in wild soybean have not yet been examined. Wild soybean seeds can survive in extreme climatic conditions in their native habitats, making them a good target for studying dormancy as well as longevity traits. These traits are important in terms of soybean improvement as well as ex situ germplasm conservation. By analyzing the morphological variations in leaf shape in the CWLGC G. soja accessions, we can potentially unveil the process of domestication of this trait and enhance our understanding of the regulation of photosynthesis. A comparative and in-depth genome resequencing of G. soja chloroplast genomes could enhance our understanding of the domestication process of G. max, as well as of the traits regulated by the plastid genome. Up until now, only limited knowledge of these aspects is available [115,116].

7. Conclusions

It is now well understood that during the process of domestication of soybean, many genes/alleles related to abiotic and biotic stress tolerance and agronomic traits may have been lost due to bottleneck and human selection. The narrow genetic background of cultivated soybean can be expanded by exploring wild soybean germplasms. The wild soybean present on the Korean peninsula is a valuable resource and has high genetic diversity. CWLGC maintains a comprehensive wild soybean collection and strives to preserve its valuable genetic diversity. Through this review, we introduce a genetic resource of wild soybean that could be beneficial to soybean researchers worldwide.

Author Contributions

G.C. led the collection, maintenance, and characterization of the germplasm bank. G.C. and H.M.L. coordinated the preparation and writing of this manuscript. All authors actively participated in conducting literature review, collecting relevant information, writing, preparing tables and figures, and proofreading. All authors have read and agreed to the published version of the manuscript.

Funding

The work is supported by the Cooperative Research Program for Agriculture Science and Technology Development (project no. PJ012942), Rural Development Administration, Korea, to G.C., and the Hong Kong RGC AoE Scheme (AoE/M-403/16), to H.M.L. G.C. thanks all graduate and post-graduate students, collaborators, and friends who participated in germplasm collection. Jeeyan Chu copy-edited this manuscript.

Conflicts of Interest

No conflicts of interest are to be declared.

Availability of Germplasm

The germplasm and genetic resource described in this review is currently available to the international soybean breeding community under the jurisdiction of international as well as Korean laws. Germplasm requests and plans for collaborations should be sent to G.C. ([email protected]).

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Figure 1. Map showing the archaeological sites of soybeans in Korea. Bullets under each city show the names of the archaeological sites while the dates in brackets show the carbon dating information on charred soybean seeds. If there is no carbon dating of the soybean samples, then the reported chronological year is given [81,83].
Figure 1. Map showing the archaeological sites of soybeans in Korea. Bullets under each city show the names of the archaeological sites while the dates in brackets show the carbon dating information on charred soybean seeds. If there is no carbon dating of the soybean samples, then the reported chronological year is given [81,83].
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Figure 2. Wild soybean germplasm. (a) Wild soybean germplasm distribution and collection. (b) Different stages of in situ propagation and characterization at CWLGC.
Figure 2. Wild soybean germplasm. (a) Wild soybean germplasm distribution and collection. (b) Different stages of in situ propagation and characterization at CWLGC.
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Figure 3. Morphological diversity of soybeans in the CWLGC collection. (a) Leaf shape variations in G. soja accessions. (b) Root structure variations in G. soja accessions. (c) Samples of the legume seed collection at CWLGC.
Figure 3. Morphological diversity of soybeans in the CWLGC collection. (a) Leaf shape variations in G. soja accessions. (b) Root structure variations in G. soja accessions. (c) Samples of the legume seed collection at CWLGC.
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Figure 4. Demonstrations of the diversity in the CWLGC. (a) Flower color variations [40]. (b) Using Kunitz trypsin inhibitor, different KTi forms were detected in Korean G. soja accessions by non-denaturing PAGE. Lanes 1–9 are: Tia protein standard (Sigma), Tia, Tib, Tia/Tib, Tibi7-1, Tia, Tibi5, Tib, and Tia, respectively [110]. (c) Comparison of saponin composition phenotypes in seed hypocotyls in the Korean G. soja collection by thin-layer chromatography (TLC). Lanes 1–7 are the common phenotypes: Aa, Ab, AaBc, AbBc, Aa+a, AaBc+a, and AbBc+a types, respectively. Lanes 8, 9, and 10 are mutant phenotypes: AuAeBc (CWS0115), A0Bc+ag (CWS2133), and A0Bc-S (CWS5095) types, respectively [32].
Figure 4. Demonstrations of the diversity in the CWLGC. (a) Flower color variations [40]. (b) Using Kunitz trypsin inhibitor, different KTi forms were detected in Korean G. soja accessions by non-denaturing PAGE. Lanes 1–9 are: Tia protein standard (Sigma), Tia, Tib, Tia/Tib, Tibi7-1, Tia, Tibi5, Tib, and Tia, respectively [110]. (c) Comparison of saponin composition phenotypes in seed hypocotyls in the Korean G. soja collection by thin-layer chromatography (TLC). Lanes 1–7 are the common phenotypes: Aa, Ab, AaBc, AbBc, Aa+a, AaBc+a, and AbBc+a types, respectively. Lanes 8, 9, and 10 are mutant phenotypes: AuAeBc (CWS0115), A0Bc+ag (CWS2133), and A0Bc-S (CWS5095) types, respectively [32].
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Table 1. List of genes and QTLs found to be associated with specific traits using either wild soybean or a cross between wild and cultivated soybeans.
Table 1. List of genes and QTLs found to be associated with specific traits using either wild soybean or a cross between wild and cultivated soybeans.
TraitGene/QTLChromosome/Locus GroupSource (accession)Reference
Yield Related Traits
Flower colorDihydroflavonol-4-reductase 4 (w4-s1 allele) (DFR)B2 (Ch 14)WS (CW13133)[39]
Flavonoid 3′5′-hydroxylase (F3′5′H) and DFRB2 (Ch 14)WS (CW12700 and CW13381)[40]
DFR2 (w4-s1)B2 (Ch 14)WS (CW13133) × CS (IT182932)[41]
Oil and local breeding related traitsQTLs3, 8, 13, 17, WS × CS[17]
Shoot fresh weightQTLs6, 15, 19WS (PI 483463) × CS (Hutcheson)[42]
Biological nitrogen fixation related traitsQTLs7,8,12,17,18WS (W05) × CS (C08)[43]
Small seed, Yellow seed color,
Soy sprout
WS (PI135624)[44]
High yield B2 (U26)WS (PI 407305) [45]
Yield, height and maturityQTLsC2, E, K and MWS × CS[46]
Seed yield, 100-seed weight, seed filling period, maturity, height, lodgingQTLsA1, J, N, H, F, LWS × CS[47]
QTLsMultipleCS (NN86-4) × WS (PI342618B)[48]
QTLs1, 2, 6, 8, 13, 14, 17, 20CS (Williams 82) × WS (PI 366121)[49]
Biotic Stress Tolerance
Soybean cyst nematode resistanceRhg1, Rhg4 locus and QTLsG, A2, B1CS (Magellan) × WS (PI 404198A)[26]
Glyma18g196200, Glyma18g077900, Glyma18g078000, Glyma18g106800, Glyma18g107000, Glyma18g107100Ch18WS[50]
Glyma18g106800, Glyma18g064100
QTLs (cqSCN-006, cqSCN-007)I, J, K, OWS (PI 468916, 464925B)[51,52]
Markers (A245_1 and Satt598)15, 18WS (PI 468916)[53]
Resistance to southern root knot nematode WS[54]
Foxglove aphid resistance
(Aulacorthum solani)
Raso27CS (Williams 82) × CS (PI 366121)[55]
Aphid resistance (Aphis glycines)Rag3c and Rag68, 16WS (85-32)[56]
QTLs8, 16, WS
WS (PI 518282)
[57]
[58]
Sclerotinia stem rotQTLs3, 8, 20WS × CS[59,60,61]
Resistance to Mung bean yellow mosaic India virus Ch 8 and 14WS (PI 393551)[62]
Resistance to Phtophthora sojaQTLsJ, I, G (Ch 16, 18, 20)WS (PI 407162) × CS (V71-370)[63]
Abiotic Stress Tolerance
Salt tolerance WS (N23232 BB52)[64]
Allele (Ncl locus) WS (PI 483463)[65]
QTLs D2 (Ch 17) WS (JWS156-1)[66]
QTLs3WS[67]
RLKs CaMs, JA/SA Signaling genes, MAPKs, WRKYs [60,61]
Tolerance to herbicide metribuzin WS (PI 245331, PI 163453)[68]
Root traitsQTLs8, 12WS (PI 326582A) × CS (PI 552538)[69]
Root architectureGlyma15g42220, Glyma06g46210, Glyma06g45910, Glyma06g45920, Glyma07g324806, 7, 15WS (PI 407162) × CS (V71-370)[70]
Alkalinity toleranceALMT, LEA, ABC transporter, GLR, NRT/POT and SLAH genesMultipleWS (N24852)[71]
Drought toleranceGsWRKY20 [72]
Nutrition
Seed protein contentMarker pA-245CCS (A81-356022) × WS (PI 468916)[73]
Seed saturated fatty acid contentsSNPs GS[30]
Glyma14g121400, Glyma16g06850014, 16
Seed unsaturated fatty acidsGlyma16g014000, Glyma07g1121007, 16
Linolenic acidQTLsMultipleWS × CS[74]
Pearl Japanese fermented product (Natto) WS[54]
Protein, oil, palmitic acid, stearic acid, oleic acid, linoleic acid, lenolenic acidQTLs2, 7, 14, 16WS[30]
Saponin ASg-1Ch 7WS[58,75]
Sg-5 (Glyma15g39090)Ch 15WS × CS[34,62]
Glyma15g39090Ch 15WS[33]
Seed antioxidant, phenolics, and flavonoidsGmMATE1,2,4Ch 18,19WS (W05) × CS (C08)[76]
Table 2. Global soybean germplasm collections by institute.
Table 2. Global soybean germplasm collections by institute.
InstcodeInstituteNo. of Accessions %WSLRBLACOT
CHN001ICGR-CAAS32,0211421 79
USA033SOY21,07591080541
KOR011RDAGB-GRD17,6448<1455150
TWN001AVRDC15,3147 <1 <1100
BRA014CNPSO11,8005 100
JPN003NIAS11,473553321 40
RUS001VIR64393 9404111
IND016AICRP-Soybean40222<1 100
CIV005IDESSA37272 100
TWN006TARI27451 100
DEU146IPK266111235323
ZWE003CBICAU22361 100
IDN182ICRR21981<1 100
AUS048ATCFC212113<138526
NGA039IITA19091 54190
FRA060AMFO15821 100
THA005FCRI-DA/TH15101 100
MEX001INIA-Iguala15001 100
PHL130IPB-UPLB13811 100
UKR001IR128813121723
COL017ICA/REGION 112351 <1641322
SRB002IFVCNS12001 100
ROM002ICCPT Fundul1024<1 6238<1
Others (166)81,83936 1142751
Total229,94410061771356
ICGR-CAASInstitute of Crop Germplasm Resources, Chinese Academy of Agricultural Sciences
SOYSoybean Germplasm Collection, United States Department of Agriculture, Agricultural Research Services
RDAGB-GRDGenetic Resources Division, National Institute of Agricultural Biotechnology, Rural Development Administration (Korea)
AVRDCWorld Vegetable Centre (former Asian Vegetable Research and Development Centre)
CNPSOEmbrapa Soja (Brazil)
NIASNational Institute of Agrobiological Sciences (Japan)
VIRN.I. Vavilov All-Russian Scientific Research Institute of Plant Industry (Russian Federation)
AICRP-SoybeanAll India Coordinated Research Project on Soybean (India)
IDESSAInstitut des Savanes (Côte d’Ivoire)
TARITaiwan Agricultural Research Institute
IPKGenebank, Leibniz Institute of Plant Genetics and Crop Plant Research (Germany)
CBICAUCrop Breeding Institute (Zimbabwe)
ICRRIndonesian Centre for Rice Research
ATCFCAustralian Tropical Crops & Forages Genetic Resources Centre
IITAInternational Institute of Tropical Agriculture
AMFOG.I.E. Amelioration Fourragère (France)
FCRI-DA/THField Crops Research Institute–Department of Agriculture (Thailand)
INIA-IgualaEstación de Iguala, Instituto Nacional de Investigaciones Agrícolas (Mexico)
IPB-UPLBInstitute of Plant Breeding, College of Agriculture, University of the Philippines, Los Baños College (Philippines)
IRInstitute of Plant Production n.a. V.Y. Yurjev of UAAS (Ukraine)
ICA/REGION 1Corporación Colombiana de Investigación Agropecuaria Tibaitata (Colombia)
IFVCNSInstitute for Field and Vegetable Crops (Serbia)
ICCPT FundulResearch Institute for Cereals and Technical Plants Fundulea (Romania)
WS = Wild Relatives, LR = Landrace, BL = Breeding Line, AC = Advanced Cultivar, and OT = Others. Source: [5].
Table 3. List of wild legume germplasm accessions at Chung’s Wild Legume Germplasm Collection.
Table 3. List of wild legume germplasm accessions at Chung’s Wild Legume Germplasm Collection.
SpeciesNo. of Accessions
Glycine max (L.) Merr600
Glycine soja6232
Amphicarpaea edgeworthii1300
Vigna vexillata810
Rhynchosia volubilis225
Phaseolus nipponensis700
Other wild legumes
Dunbaria villosa (Thunb.) Makino
Vigna umbellate (Thumb.) Ohwi & Ohashi
Vigna angularis var. nipponensis (ohwi) ohwi & ohashi
Vigna angularis (Willd.) Ohwi & Ohashi
700
Total10,567

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MDPI and ACS Style

Nawaz, M.A.; Lin, X.; Chan, T.-F.; Ham, J.; Shin, T.-S.; Ercisli, S.; Golokhvast, K.S.; Lam, H.-M.; Chung, G. Korean Wild Soybeans (Glycine soja Sieb & Zucc.): Geographic Distribution and Germplasm Conservation. Agronomy 2020, 10, 214. https://doi.org/10.3390/agronomy10020214

AMA Style

Nawaz MA, Lin X, Chan T-F, Ham J, Shin T-S, Ercisli S, Golokhvast KS, Lam H-M, Chung G. Korean Wild Soybeans (Glycine soja Sieb & Zucc.): Geographic Distribution and Germplasm Conservation. Agronomy. 2020; 10(2):214. https://doi.org/10.3390/agronomy10020214

Chicago/Turabian Style

Nawaz, Muhammad Amjad, Xiao Lin, Ting-Fung Chan, Junghee Ham, Tai-Sun Shin, Sezai Ercisli, Kirill S. Golokhvast, Hon-Ming Lam, and Gyuhwa Chung. 2020. "Korean Wild Soybeans (Glycine soja Sieb & Zucc.): Geographic Distribution and Germplasm Conservation" Agronomy 10, no. 2: 214. https://doi.org/10.3390/agronomy10020214

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