Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study
Abstract
:1. Introduction
2. Materials and Methods
2.1. Experimental Details
2.2. Computational Methods
3. Results and Discussion
3.1. DFT Studies on the Isolated Molecule of Thiabendazole
3.1.1. Structural Details
3.1.2. Spectroscopic Properties
3.2. DFT Studies on the Isolated Thiabendazole-Formic Acid Complex
3.3. Single Crystal X-Ray Diffraction Studies on TBZ-Formic Acid Solvate, Theoretical Predictions, and Comparison with the Crystal of Pure TBZ
3.4. Hirshfeld Analysis of Crystalline TBZ and TBZ-Formic Acid Solvate
3.5. DSC Study of TBZ and TBZ-Formic Acid Solvate Crystalline Materials
3.6. Infrared and Raman Spectra of TBZ and TBZ-Formic Acid Solvate Crystalline Materials
3.6.1. Infrared Spectra
3.6.2. Raman Spectra
4. Conclusions
Supplementary Materials
Author Contributions
Acknowledgments
Conflicts of Interest
References
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trans | gauche | trans | gauche | ||
---|---|---|---|---|---|
C5-C6 | 1.415 | 1.412 | C6-C7-H7 | 120.4 | 120.3 |
C6-C7 | 1.397 | 1.397 | C6-N1-C4 | 105.1 | 105.5 |
C6-N1 | 1.383 | 1.383 | C10-C5-N3 | 132.9 | 132.9 |
C5-C10 | 1.392 | 1.392 | C5-C10-C9 | 116.8 | 116.7 |
C5-N3 | 1.378 | 1.381 | C5-C10-H10 | 121.9 | 122.1 |
C10-C9 | 1.388 | 1.388 | C5-N3-H3 | 128.8 | 126.1 |
C10-H10 | 1.081 | 1.081 | C5-N3-C4 | 107.0 | 107.0 |
C8-C9 | 1.406 | 1.406 | C9-C10-H10 | 121.3 | 121.2 |
C9-H9 | 1.081 | 1.081 | C10-C9-C8 | 121.5 | 121.5 |
C8-C7 | 1.386 | 1.386 | C10-C9-H9 | 119.3 | 119.2 |
C8-H8 | 1.081 | 1.081 | C8-C9-H9 | 119.2 | 119.2 |
C7-H7 | 1.081 | 1.081 | C9-C8-C7 | 121.5 | 121.4 |
N3-H3 | 1.006 | 1.004 | C9-C8-H8 | 119.0 | 119.0 |
C4-N1 | 1.313 | 1.309 | C7-C8-H8 | 119.5 | 119.6 |
C2-H2 | 1.075 | 1.076 | C8-C7-H7 | 121.6 | 121.7 |
C2-C3 | 1.367 | 1.371 | C4-N3-H3 | 124.2 | 125.9 |
C2-S | 1.720 | 1.721 | N1-C4-C3 | 126.1 | 125.9 |
C1-H1A | 1.079 | 1.079 | N1-C4-N3 | 113.0 | 112.6 |
C1-S | 1.738 | 1.744 | C3-C2-H2 | 127.7 | 128.8 |
C1-N2 | 1.295 | 1.291 | S-C2-H2 | 122.5 | 120.8 |
C3-C4 | 1.454 | 1.460 | C3-C2-S | 109.8 | 110.4 |
C3-N2 | 1.380 | 1.378 | C2-C3-C4 | 125.7 | 125.3 |
C4-N3 | 1.374 | 1.384 | C2-C3-N2 | 115.3 | 114.8 |
C5-C6-C7 | 119.8 | 119.8 | C2-S-C1 | 89.2 | 88.5 |
C5-C6-N1 | 110.2 | 110.3 | C1-S-C1-H1A | 121.0 | 120.6 |
C6-C5-C10 | 122.4 | 122.5 | N2-C1-H1A | 124.2 | 124.2 |
C6-C5-N3 | 104.6 | 104.6 | S-C1-N2 | 114.8 | 115.2 |
C7-C6-N1 | 130.0 | 129.8 | C1-N2-C3 | 110.9 | 111.1 |
C6-C7-C8 | 118.0 | 118.0 | C4-C3-N2 | 119.0 | 119.9 |
C3-C4-N3 | 120.8 | 121.5 | N1-C4-C3-N2 | 180.0 | 21.1 |
ν | IIR | Approximate b Description | ν | IIR | Approximate Description | ν | IIR | Approximate Description |
---|---|---|---|---|---|---|---|---|
3573 | 79 | νN-H | 1226 | 3 | δCH Ph | 732 | 70 | γCH Ph |
3202 | 8 | νC2-H | 1218 | 6 | δC1-H | 721 | 2 | γ(inter-rings) |
3156 | 0 | νC1-H | 1167 | 6 | δN-H | 654 | 1 | τThi |
3131 | 14 | νCH Ph | 1146 | 4 | δCH Ph | 626 | 1 | δThi |
3123 | 18 | νCH Ph | 1113 | 2 | δCH Ph | 617 | 2 | δCCC Ph |
3112 | 7 | νCH Ph | 1073 | 2 | δC2-H | 579 | 4 | τPh |
3103 | 0 | νCH Ph | 1005 | 6 | νC-C Ph | 567 | 1 | δCCC Ph |
1620 | 5 | νC=C Ph | 968 | 3 | δNCN Imi | 529 | 11 | δ(inter-rings) |
1582 | 4 | νC=C Ph | 962 | 0 | γCH Ph | 509 | 80 | γN-H |
1560 | 8 | νC3-C4 | 923 | 2 | γCH Ph | 480 | 6 | τThi |
1495 | 34 | νC2-C3 | 892 | 15 | δCCC Ph | 428 | 1 | τPh |
1488 | 3 | δCH Ph | 888 | 8 | δC3N2C1 | 333 | 0 | δ(butterfly) |
1445 | 7 | δCH Ph | 857 | 38 | νC2-S | 331 | 1 | δ(inter-rings) |
1422 | 44 | νC1-N2 | 837 | 1 | γCH Ph | 282 | 0 | δ(skeletal) |
1392 | 41 | νC4-N3/δN-H | 820 | 40 | γC2H/γC1H | 251 | 3 | τImi |
1344 | 49 | νC=C Ph | 808 | 4 | δCCC Ph | 188 | 0 | τ(skeletal) |
1305 | 28 | νC3-N2 | 764 | 1 | νC1-S | 94 | 3 | δ(inter-rings) |
1296 | 16 | δCH Ph | 760 | 7 | γC2H/γC1H | 67 | 0 | τ(skeletal) |
1261 | 51 | νC6-N1/νC5-N3 | 754 | 7 | τPh | 57 | 4 | τC3-C4 |
Excited State | Wavelength (nm) | Oscillator Strength (f) | Most Relevant One-Electron Transition a |
---|---|---|---|
T1 (A′) | 433.77 | 0 | HOMO→LUMO (0.6) |
T2 (A′) | 364.25 | 0 | HOMO-1→LUMO (0.5) |
T3 (A′) | 327.01 | 0 | HOMO→LUMO+1 (0.5) |
S1 (A′) | 307.01 | 0.2636 | HOMO→LUMO (0.7) |
S2 (A′) | 291.22 | 0.0542 | HOMO-1→LUMO (0.7) |
T4 (A′) | 286.09 | 0 | HOMO-1→LUMO+4 (0.4); HOMO-1→LUMO+2 (0.3) |
T5 (A′) | 280.58 | 0 | HOMO-2→LUMO (0.4) |
S3 (A′) | 271.17 | 0.341 | HOMO→LUMO+1 (0.7) |
T6 (A′) | 268.91 | 0 | HOMO→LUMO+4 (0.5) |
S4 (A′) | 266.33 | 0.0694 | HOMO-1→LUMO+1 (0.6) |
S5 (A″) | 255.47 | 0.0009 | HOMO→LUMO+2 (0.7) |
S6 (A″) | 254.22 | 0.0008 | HOMO-3→LUMO+1 (0.7) |
Exp. | B3LYP | B3LYP-D2 | 2 | ||||||
---|---|---|---|---|---|---|---|---|---|
pob-TZVP | %E | 6-31G(d,p) | %E | pob-TZVP | %E | 6-31G(d,p) | %E | ||
TBZ orthorhombic (Z = 8) Pbca | |||||||||
a | 17.052 | 18.928 | 11.0 | 19.325 | 13.3 | 17.411 | 2.1 | 17.620 | 3.3 |
b | 10.998 | 10.399 | −5.4 | 11.482 | 4.4 | 10.132 | −7.9 | 10.632 | −3.3 |
c | 10.030 | 9.923 | −1.1 | 10.081 | 0.5 | 9.848 | −1.8 | 9.946 | −0.8 |
Volume | 1881.01 | 1953.24 | 3.8 | 2236.91 | 18.9 | 1737.44 | −7.6 | 1863.16 | −0.9 |
TBZ-formic acid solvate monoclinic (Z = 4) P21/c | |||||||||
a | 3.8339 | 4.219 | 10.0 | 4.295 | 12.0 | 3.621 | −5.6 | 3.734 | −2.6 |
b | 22.195 | 22.580 | 1.7 | 22.606 | 1.9 | 22.046 | −0.7 | 22.133 | −0.3 |
c | 15.3695 | 14.442 | −6.0 | 15.168 | −1.3 | 15.157 | −1.4 | 15.181 | −1.2 |
β | 93.412 | 100.542 | 7.6 | 92.51 | −1.0 | 97.596 | 4.5 | 95.477 | 2.2 |
Volume | 1305.52 | 1352.61 | 3.6 | 1471.27 | 12.7 | 1199.27 | −8.1 | 1248.98 | −4.3 |
νexp | νpred | Approximate b Description | νexp | νpred | Approximate b Description |
---|---|---|---|---|---|
1622 | 1631 | νC=C Ph | 1158 | 1160 | δCH Ph |
1592 | 1595 | νC=C Ph | 1095 | 1109 | δC2-H |
1579 | 1577 | νC3-C4 | 1013 | 1018 | νC-C Ph |
1492 | 1500 | νC3-C2 | 986 | 983 | δNCN Imi |
1481 | 1490 | νC4-N3 | 927 | 927 | γCH Ph |
1455 | 1460 | δCH Ph | 902 | 946 | γN-H |
1412 | 1438 | νC1-N2 | 874 | 899 | δC3N2C1 |
1403 | 1422 | δN-H | 835 | 864 | νC2-S |
1358 | 1371 | νC=C Ph | 822 | 848/840 | γC2H/γC1H |
νC3-N2 | n.obs. | 815 | νC1-S/δCCC Ph | ||
δCH Ph | 780 | 767 | γC2H/γC1H | ||
1278 | 1285 | νC6-N1/νC5-N3 | 769 | 756 | γCH Ph |
1254 | 1271 | δN-H | 731 | 751 | γ (inter-rings) |
1231 | 1230 | δC10-H/δC7-H | 723 | 739 | γCH Ph |
1197 | 1202 | δC2-H/δC1-H | 653 | 654 | τThi |
TBZ | TBZ-Formic Acid Solvate | ||||
---|---|---|---|---|---|
νexp | νpred | App. Description | νexp | νpred | App. Description |
3091 | 3100 | νC-H Thi | 3121 | 3126 | νC-H Thi |
3065 | 3063 | νC-H Ph | 3107 | 3116 | νC-H Thi |
3044 | 3043 | νC-H Ph | 3078 | 3080 | νC-H Ph |
2976 | 2967 | νN-H | 3068 | 3062 | νC-H Ph |
b | 2912 | νN-H | 2921 | 2921 | νC-H HCOOH |
1623 | 1629 | νC=C Ph | b | 2889 | νN3-H |
1593 | 1593 | νC=C Ph | 2835 | 2835 | νC-H HCOO− |
1579 | 1574 | νC3-C4 | b | 2669 | νO-H HCOOH/νN-H |
1547 | 1564 | νC3-C4 | b | 2632 | νO-H HCOOH/νN-H |
1494 | 1501 | νC3-C2 | b | 2546 | νO-H HCOOH |
1482 | 1487 | νC4-N1 | b | 2514 | νN1-H |
1456 | 1461 | δCH Ph | 1732 | 1756 | νC=O HCOOH |
1425 | 1434 | νC1-N2 | δN1-H | ||
1416 | 1419 | νC4-N3 | νC=C Ph | ||
1357 | 1369 | νC=C Ph | 1597 | 1597 | νC3-C4 |
1303 | 1317 | δCH Thi | 1544 | 1544 | δN1-H/δN3-H |
1303 | 1309 | δCH Ph | 1494 | 1503 | νC3-C2 |
1278 | 1278 | νC5-N3 | 1469 | 1479 | νC1-N2 |
1257 | 1273 | δN-H | δO-H HCOOH | ||
1231 | 1227 | νC6-N1 | δCH Ph | ||
1201 | 1207 | δC2-H/δC1-H | 1428 | 1446 | νC4-N3 |
1157 | 1157 | δCH Ph | 1415 | 1439 | νC4-N1 |
1120 | 1119 | δCH Ph | 1387 | 1390 | δC-H HCOO− |
1097 | 1109 | δC2-H | 1375 | 1386 | δC-H HCOOH |
1014 | 1017 | νC-C Ph | 1359 | 1359 | νO-C-O HCOO− |
989 | 985 | δNCN Imi | 1324 | 1328 | νC3-N2 |
970 | 967 | γCH Ph | 1311 | 1310 | δCH Ph |
936 | 948 | γN-H | 1291 | 1300 | νC6-N1/νC-C Ph |
δC3N2C1 | 1263 | 1278 | νC5-N3 | ||
δCC Ph | 1225 | 1234 | νC-OH HCOOH | ||
879 | 867 | νC2-S | 1202 | 1206 | δC2-H/δC1-H |
858 | 844 | γC2H/γC1H | 1161 | 1168 | δCH Ph |
840 | 836 | γCH Ph | 1140 | 1133 | δC2-H |
823 | 814 | νC1-S/δCCC Ph | 1124 | 1124 | δCH Ph |
782 | 783 | γC2H/γC1H | 1052 | 1051 | γCH HCOO− |
771 | 770 | νC1-S/δCCC Ph | 1048 | 1041 | γOCO HCOOH |
749 | 761 | γCH Ph | 1011 | 1017 | νC-C Ph |
726 | 732 | γ(inter-rings) | 981 | 990 | γCH Ph/γN1H |
655 | 654 | τThi | 971 | 978 | δNCN Imi |
636 | 629 | δThi | 932 | 930 | γN3H |
626 | 622 | δCCC Ph | 901 | 896 | γCH Ph |
618 | 613 | δCCC Ph | 879 | 886 | δC3N2C1 |
578 | 575 | τPh | 842 | 849 | νC2-S |
577 | 569 | δCCC Ph | γCH Ph | ||
538 | 539 | δ(inter-rings) | δN2C1S | ||
491 | 487 | τThi | 781 | 776 | γC2H/γC1H |
451 | 465 | τPh | 750 | 747 | γCH Ph |
357 | 363 | δ(butterfly) | 724 | 719 | γ (inter-rings) |
331 | 329 | δ(inter-rings) | 699 | 693 | δOCO HCOOH |
292 | 289 | δ(skeletal) | τThi | ||
270 | 273 | τImi | δThi | ||
202 | 209 | τ (skeletal) | 609 | 614 | δCCC Ph |
570 | 567 | τPh | |||
530 | 535 | δCCC Ph | |||
488 | 487 | τThi | |||
425 | 432 | τPh | |||
354 | 344 | δ(butterfly) | |||
δ(inter-rings) | |||||
νHCOOH…HCOO− | |||||
283 | 284 | δ(skeletal)/τImi | |||
198 | 221 | τHCOOH | |||
182 | 209 | τ(skeletal) |
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Tabanez, A.M.; Nogueira, B.A.; Milani, A.; Eusébio, M.E.S.; Paixão, J.A.; Nur Kabuk, H.; Jajuga, M.; Ildiz, G.O.; Fausto, R. Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study. Molecules 2020, 25, 3083. https://doi.org/10.3390/molecules25133083
Tabanez AM, Nogueira BA, Milani A, Eusébio MES, Paixão JA, Nur Kabuk H, Jajuga M, Ildiz GO, Fausto R. Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study. Molecules. 2020; 25(13):3083. https://doi.org/10.3390/molecules25133083
Chicago/Turabian StyleTabanez, Andreia M., Bernardo A. Nogueira, Alberto Milani, M. Ermelinda S. Eusébio, José A. Paixão, Hayrunnisa Nur Kabuk, Maria Jajuga, Gulce O. Ildiz, and Rui Fausto. 2020. "Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study" Molecules 25, no. 13: 3083. https://doi.org/10.3390/molecules25133083