We selected 55 PA-rich plant samples containing interesting but complex mixtures of natural PAs based on our previous study [
13]. These plant samples were similarly oxidized by aerial oxidation under alkaline conditions as in [
13], and after the oxidation, PAs were even more complex. These natural and modified PAs were studied here by UHPLC-DAD connected to ultrahigh-resolution Q-orbitrap MS/MS in order to detect the sophisticated changes in PA structures. PAs were identified based on their singly and/or multiply charged ions with their corresponding exact masses and molecular formula. The analyses were carried out by reversed-phase LC, and therefore, oligomeric and polymeric PAs were mainly present as unresolved humps in the UV chromatograms at 280 nm, see the leaf extract of
Ruprechtia salicifolia in
Figure 2A for an example. In the total ion chromatogram, the ionization of other phenolic compounds was more intensive than that of the PAs, and therefore, the PA hump was not so apparent (
Figure 2B). However, the accuracy of orbitrap makes the interpretation of MS results easier as the isotopic patterns of multiply charged ions are clearly defined, and the possible overlapping of peaks can be detected, thus enabling the determination of the exact masses and molecular formulae of different oligo- and polymeric PAs. For example, galloylated (epi)catechin at
m/
z 441, galloylated dimeric PC at
m/
z 729, and galloylated trimeric PC at
m/
z 1017 exhibit well-separated peaks in extracted ion chromatograms (EICs) in
Figure 2C–E, and they can be easily detected based on their UV and mass spectra, including exact masses and the corresponding molecular formula. The results obtained here were consistent with previous results obtained by MS/MS, showing that
Ruprechtia salicifolia leaves contained 24 mg/g of PAs, of which only 3% were PD-containing PAs, some of them were galloylated, and the mDP was found to be 7 [
13].
2.2. A-Type PCs in the Initial Non-Oxidized Plant Extracts
The presence of A-type PAs in the initial plant extracts was confirmed by their characteristic fragmentation patterns similarly to B-type PAs. As examples, the characteristic fragmentation pathways and the MS/MS data of A-type PC dimer and trimer having one A-type linkage are shown and discussed in detail (
Figure 4 and
Figure 5). The fragmentation of the A-type PC dimer produced four fragment ions (
Figure 4). The RDA fragmentation of the terminal unit produced an ion at
m/
z 423, which confirms the presence of an A-type linkage [
26,
34,
35]. In addition, we suggest that the RDA fragmentation of the extension unit and the sequential loss of water could produce the ion at
m/
z 407. The ion at
m/
z 449 is the HRF production, i.e., the result of the loss of the phloroglucinol unit [
26]. The ions at
m/
z 285 and 289 corresponded to QM cleavage. Similarly, the A-type PC trimer exhibited a molecular ion at
m/
z 863 and characteristic fragment ions in MS/MS at
m/
z 711, 693, 573, 559, 451, 411 and 289 as previously reported by Sui et al. (2016) [
26]. The RDA fragmentation of the A-type PC trimer produced an ion at
m/
z 711, which again confirms the presence of A-type linkage according to the previous study [
26] and hints that the A-type linkage could be between two extension units. We suggest that the ion at
m/
z 693 corresponds to the sequential loss of water and supports the position of A-type linkage, as shown in
Figure 5. In addition, we suggest that the additional RDA of the heterocyclic C-ring of the terminal flavan-3-ol unit exhibits the ion at
m/
z 559. This ion was minor in our studies. The ions at
m/
z 573 and 289 corresponded to the QM cleavage of the lower interflavanoid bond [
26]. We also detected ions at
m/
z 575 and 287. We propose that the ions at
m/
z 451 and 411 could correspond to the HRF of the heterocyclic C-ring of the middle flavan-3-ol unit supporting the location of A-type linkage between the extension units according to
Figure 5.
2.3. Modifications of B-Type PCs in Plant Extracts Due to the Alkaline Oxidation
After the oxidation, B-type PCs in different plant extracts were modified differently. Some of the samples showed no or minor modifications; see
Figure 6A,B, for example, for shorter B-type PC oligomers in the leaf extract of
Begonia bowerae “Nigra” before and after oxidation. When these types of plant extracts were oxidized, the total mass spectra of the initial and oxidized plant extracts were similar. However, tiny differences were detected in the detailed mass spectrometric data. For example, the PC dimer at
m/
z 577 was companioned with
m/
z 575, and the PC trimer at
m/
z 865 with
m/
z 863, respectively. When the amounts of PCs were low before the oxidation, after the oxidation their signals almost disappeared from the mass spectra, hinting that they had converted to unidentifiable or degraded due to the oxidation. This phenomenon was observed, for example, for the leaf extracts of
Combretum indicum and
Euphorbia characias containing low amounts of few short PC oligomers and supported by the previous MS/MS data that showed that the PA content decreased from 4 mg/mL to 1 mg/mL and 7 mg/mL to 1 mg/mL, respectively, due to the oxidation [
13]. This phenomenon might be related to the experimental conditions used, meaning that they were more severe when the initial PA contents were low. In some samples, a part of the B-type PCs was modified more, see
Figure 6C,D, for example, for shorter B-type PC oligomers in the leaflet extract of
Cyperus owanii before and after oxidation. When these types of plant extracts were oxidized, visible differences were detected in the total mass spectra showing the mass difference of 2 Da in comparison to initial PCs (
Figure 6C,D,
Table S2).
It is well-known that the oxidation of
o-dihydroxy polyphenols, i.e., the catechol B-ring of PCs, typically yields
o-quinones with a mass difference of 2 Da. In fact, we have noticed that this kind of oxidation can also happen in mass spectrometric analyses. There can be minor signals in the mass spectra having the
m/
z values 2 Da smaller than the
m/
z values of PCs corresponding for the possible oxidation or formation of quinone forms of PCs during the ionization (data not published). It is feasible that here in the alkaline oxidation,
o-dihydroxy polyphenols form first
o-quinones. However, the
o-quinone forms formed are unstable and most probably quickly react further. One possible outcome could be the oxidative conversion of B-type PCs to A-type PCs, as previously reported in the literature [
15]. The transformation of B-type PCs to A-type PCs involves the oxidative removal of the hydride ion at C2 of the C-ring as an initial step: the prevailing basic conditions induce the oxidation of the
o-dihydroxy functionality of B-ring to an
o-quinone, which subsequently serves as an oxidant for the conversion of B-type procyanidin dimer to A-type one [
15] (
Figure 7). This quinone methide mechanism has also been evidenced in different temperatures, pH and catalytic conditions [
37], by radical oxidation using 1,1-diphenyl-2-picrylhydrazyl radicals under neutral conditions [
38] and by laccase (EC 1.10.3.2) [
39].
When we studied the modified PCs with the mass difference of 2 Da in the oxidized extracts and their product ions obtained by MS/MS, they were concluded to be similar to A-type PCs and their fragment ions (as discussed above in
Section 2.2), showing the characteristic fragmentation patterns yielding ions at
m/
z 285 and 289 (QM cleavage),
m/
z 423 (RDA fragmentation) and
m/
z 449 (HRF). As an example, we show the conversion of the B-type PC dimers of leaflet extract of
Microgramma mauritiana to A-type PC dimers in
Figure 8. In the non-oxidized extract, we detected four B-type PC dimers with
m/
z values 577 (
Figure 8A) but no A-type PC dimers with
m/
z values 575 (
Figure 8B). The tiny peaks in the EIC at
m/
z 575 corresponded presumably for the oxidation of B-type PCs in the ion source as the retention times are exactly the same as for B-type PCs. In the oxidized extract, we detected only traces of the initial B-type PCs at
m/
z 577 (
Figure 8C), but instead, we detected intensive peaks at later retention times corresponding for A-type PCs at
m/
z 575 (
Figure 8D). The tiny peaks in the EIC at
m/
z 577 having the very same retention times corresponded for the isotopic signals of the
m/
z 575. It must be noted that this study was qualitative, meaning that the abundances of the ions cannot be compared as such. In addition, it must be noted that the conversion of B-type PC to A-type PC was not always as complete as in this example and that all B-type PCs were not converted to A-type PCs; roughly estimated the abundances of the ions of A-type and B-type PC oligomers were equal. On the other hand, in some samples, we detected more differences of 2 Da; for example, the PC heptamer at
m/
z 2017 could be companioned with ions at
m/
z 2015 and 2013, hinting at the formation of one and two A-type linkages, respectively.
Even though the conversion of B-type PCs to A-type seemed to be the main reaction mechanism, we cannot fully exclude other modification reactions. PAs were present as complex mixtures in the initial non-oxidized extracts, and these mixtures were even more complex after the alkaline oxidation producing an enormous amount of MS data. For example, previous studies on base-catalyzed oxidation and rearrangement reactions of PAs have shown that PC dimers can converse into different products of C-ring isomerization, including tetrahydroxypyranochromenes, also known as phlobatannins [
15]. These products would exhibit very similar
m/
z values at 577 but different retention times in LC and different fragmentation patterns in MS. Based on the EICs at
m/
z 577, we did not detect rearrangements of this kind in the reaction conditions used. The rearrangements and the opening of the heterocyclic C-ring could also produce other products via regio-isomerization, epimerization or 1,3-aryl migration [
15]. The epimerization has mainly been related to manufacturing processes and, for example, the high temperatures related to the roasting of cocoa leads to flavan-3-ol losses, but also to the epimerization of flavan-3-ol monomers, dimers and trimers [
40]. In addition, it has been reported that polyphenol oxidase in banana fruit flesh caused the epimerization of (-)-epigallocatechin to (-)-gallocatechin [
41]. We looked at the possible epimerization of flavan-3-ols using EICs at
m/
z 289, and in general, we did not detect significant epimerization caused by the alkaline oxidation used. However, we cannot fully exclude the epimerization as we detected higher amounts of (+)-catechin in relation to (−)-epicatechin in the oxidized extract of
Pavonia cauliflora flowers than in the initial non-oxidized extract (
Figure S1). It must also be noted that the oxidized extracts were neutralized prior to the UHPLC-MS/MS, which may have caused redox reactions. In the oxidized forms, quinones are electrophiles that can react with the nucleophilic water present, and this could simply result in the reduction reaction yielding B-type PCs, which could also explain why some of the B-type PCs seemed to be unaffected.
2.4. Modifications of A-Type PCs in Plant Extracts due to the Alkaline Oxidation
A-type PCs in different plant extracts reacted differently due to the alkaline oxidation. Some of the samples showed no or minor modifications. When these types of plant extracts were subjected to alkaline oxidation, no significant differences were detected in the total mass spectra (for example, see
Table S3 for the major ions observed in the leaf extract of
Aglaonema commutatum var.
maculatum before and after oxidation). However, tiny differences could be detected in the detailed mass spectrometric data having the mass difference of 2 Da and hinting that additional A-type ether linkages could be formed. This phenomenon was more evident for some of the samples with A-type PCs; these A-type PCs were noticed to form additional A-type ether linkages due to the alkaline oxidation (
Figure 9). When these types of plant extracts were oxidized, distinct differences were detected in the total mass spectra showing the mass difference of 2 Da in comparison to initial A-type PCs. The [M − H]
− ion at
m/
z 863 corresponded for a PC trimer having one A-type ether bond and the ion at
m/
z 861 for a PC trimer having two ether linkages (
Figure 9A). Similarly, tetrameric PCs having one, two and three ether linkages were detected by the [M − H]
− ions at
m/
z 1151, 1149 and 1147, respectively (
Figure 9B). In proportion, pentameric and hexameric PCs having one, two and three ether bonds were detected by the [M − H]
− ions at
m/
z 1439, 1437 and 1435 and at
m/
z 1727, 1725 and 1723, respectively (
Figure 9C,D; however, the [M − 2H]
2− ion at
m/
z 861 of a PC hexamer was explicitly more abundant than the [M − H]
− ion at
m/
z 1723 and therefore, shown in the figure).
The formation of additional A-type linkages also affected the retention times of these oligomers. The number of additional ether linkages seemed to some extent increase as the degrees of polymerization of PCs increased, which is expected as there are more positions for the additional bonds. However, it must also be noticed that there can be minor signals with the mass difference of 2 Da corresponding to the possible oxidation or formation of quinone forms of PCs during the ionization, as discussed above. These peaks are also visible in the mass spectra in
Figure 9 before the main peaks corresponding for A-type PCs. The abundances of the ions, the shapes of the isotopic patterns and the characteristic fragment ions obtained by MS/MS confirmed the observation of additional A-type ether linkages. It is also important to note that these intramolecular reactions observed did not seem to affect the mean degree of polymerization as the higher PA oligomers or polymers were not detected in the oxidized extracts in comparison to non-oxidized extracts. The observation is supported by Mouls and Fulcrand (2012) [
14].
2.5. Plant Extracts with PAs Having Both PC and PD Subunits and Their Modifications Due to the Alkaline Oxidation
Many of the samples contained PAs with both (epi)catechin and (epi)gallocatechin units, i.e., the PAs were PC/PD mixtures. The fate of these PC/PD mixtures due to the modification via alkaline oxidation was different in comparison to PCs. PC/PD mixtures were clearly detected in the plant extracts before the oxidation both by UV and MS; see, for example, the small PA oligomers in the initial leaf extract of
Podocarpus macrophyllus (
Figure 10A and
Table S4). After the oxidation, the modified PAs were still detected by UV at 280 nm as a different type and/or delayed hump (
Figure S2), but they were not detected anymore by MS, see, for example, the missing PA oligomers in the oxidized leaf extract of
Podocarpus macrophyllus (
Figure 10B and
Table S4). We did neither detect any other signals that could correspond to the modified PC/PD mixtures nor to their possible degradation products. For example, for the PC dimer at
m/
z 577, we could detect the corresponding A-type PC dimer at
m/
z 575 in the oxidized extract, but similar distinct observations could not be made for PC/PD dimers or trimers (
Figure 10B). The reason for the loss of detectable PC/PD oligomers in ESI-MS can be, for example, intermolecular reactions between PAs [
13,
14,
15,
24,
25]. The intermolecular reactions are known to result in the formation of modified PAs by the connection of two distinct oligomeric chains, and typically, they lead to an increase in the mean degree of polymerization [
14]. For example, Vernhet et al. (2014) have noticed by small-angle X-ray scattering experiments that if PAs are oxidized in concentrated solutions, the modified PAs are high polymers with long linear or branched chains [
25]. Further oxidation can also lead to cyclization between A and B rings of different PAs [
24]. In addition, it has been noted that these new bonds and structures are resistant to acid-catalyzed cleavage, and therefore, the increase in the mean degree of polymerization can be estimated only by non-depolymerizing methods [
14,
24]. However, our results showed that these modified PAs are not either detected under the standard ESI-MS conditions used for PAs (
Figure 10). In our previous study, we used a method based on selected reaction monitoring by triple quadrupole to detect the PAs in non-oxidized and oxidized samples and noticed that the subunit composition changed due to the alkaline oxidation so that the method was not any longer capable of detecting the modified PAs [
13]. The present high-resolution MS results support our previous observations by triple quadrupole that the modified PAs in the oxidized extracts are much more complex than the initial PAs in the non-oxidized extracts and that they are not detected under similar UPLC-MS/MS conditions [
13].
The methods used for the oxidation of PAs in the literature are rather different from our method, and therefore, the results may not be directly comparable [
14,
24,
25]. In previous studies, the oxidation has been performed in water acidified with trifluoroacetic acid at pH 3.5 in order to mimic the wine pH, and the actual oxidation has been obtained by stirring the sample in the presence of air for several days [
14,
24,
25]. We used alkaline oxidation by carbonate buffer at pH 10 only for one hour.
Most of the plant extracts involved PAs with both PC and PD subunits, and only in two samples, the PAs could be considered almost PD pure. These two samples were the extracts of
Callisia gentlei var.
elegans and
Pellaea ovata. The B-type PDs were detected in the
Callisia gentlei var.
elegans extract before the oxidation; see, for example, the small PD oligomers in
Table S5, but after the oxidation, these PDs were not detected anymore by MS. We did neither detect any other signals that could correspond to the modified PDs nor to their possible degradation products. However, some of the modified PAs were still detected by UV at 280 nm as a lower and delayed hump (
Figure S3). Interestingly, before the oxidation, A-type trimeric PDs were detected in the
Pellaea ovata extract, and after the oxidation, these signals were still present, but their intensities were substantially lower by MS and, in addition,
m/
z values corresponding to the formation of additional A-type linkages in PD trimers were detected similarly to A-type PCs (
Table S6). This may indicate that in addition to intermolecular reactions observed for B-type homo- and heterogenous PDs, the A-type PDs could also have similar intramolecular reactions that were detected for A-type PCs.
2.6. Galloylated PAs in Plant Extracts and Their Modifications Due to the Alkaline Oxidation
Some of the plants contained galloylated PAs. The presence of galloylated PCs, PDs and PC/PDs in plant extracts was confirmed by their characteristic fragmentation patterns. In general, the fragmentation of galloylated PAs in MS analysis occurred similarly via RDA, HRF and QM mechanisms as discussed above [
31,
32,
33]. As an example, the characteristic fragmentation pathway and MS/MS data of a galloylated PC dimer in the leaf extract of
Ruprechtia salicifolia are shown and discussed in detail (
Figure 11). The position of the galloyl group is only indicative, and it could be attached to any other free hydroxyl group in the terminal unit. The ion at
m/
z 603 is the HRF product ion. The ions at
m/
z 287 and 441 corresponded to QM cleavage. In addition, we detected the cleavage of the galloyl group resulting in the ion corresponding for PC dimer at
m/
z 577 and the subsequent RDA fragmentation with an ion at
m/
z 425 and the further cleavage of water with an ion at
m/
z 407. The HRF of
m/
z 577 produced the fragment ion at
m/
z 451. In addition, we detected small fragment ions at
m/
z 109, 123 and 125, corresponding to the aromatic rings. The galloylated PAs could contain several galloyl groups in their structures (
Table S7).
The different galloylated PAs behaved differently during the aerial oxidation under alkaline conditions. Galloylated PCs were rather stable and reacted similarly to nongalloylated PCs. For example, no notable changes were detected for the galloylated PCs having one galloyl group in their structures in the oxidized leaf extract of
Nepenthes maxima (
Table S7). However, it must be noted that the intensities of the ions for the galloylated PCs having two or more galloyl groups were lower in the oxidized extract of
Nepenthes maxima and, for example, the galloylated PC pentamers with several galloyl groups were no longer detectable (
Table S7). The integer
m/
z values for some galloylated PCs are similar to the
m/
z values for PC/PDs and, therefore, the ultrahigh-resolution MS is required. For example,
m/
z 881 corresponds to a trimeric PA consisting of two PC and one PD units (C
45H
38O
19, mcalculated 882.20074) and to a galloylated PC dimer having two galloyl groups (C
44H
34O
20, mcalculated, 882.16435). In some samples, such as in the oxidized leaf extract of
Coccoloba uvifera, galloylated PCs were converted to A-type galloylated PCs due to oxidation, even though the galloylated PAs in the initial extract seemed to be similar to those in
Nepenthes maxima. For example, the galloylated PC dimer having one galloyl group and exhibiting an ion
m/
z 729 (
Table S7) was stable during the alkaline oxidation in the leaf extract of
Nepenthes maxima but partly modified in the leaf extract of
Coccoloba uvifera exhibiting ions both at
m/
z 727 and 729. The former ion corresponded for a galloylated A-type PC dimer (
m/
z 727.13148, C
37H
27O
16) and showed characteristic MS/MS fragments supporting the A-type linkage:
m/
z 601 (HRF product of
m/
z 727), 575 (A-type PC dimer), 557 (cleavage of water from
m/
z 575), 449 (HRF of
m/
z 575, see
Figure 4), 423 (RDA of
m/
z 575, see
Figure 4), 285 (QM of
m/
z 575, see
Figure 4), 169 (gallic acid), 125 (see
Figure 11) and 109 (see
Figure 11). One reason for these differences of similar PAs between plant extracts could be the other compounds present in the extracts and affecting the reactions of PAs.
Galloylated PC/PD mixtures and PDs were reactive and modified similarly to the nongalloylated PC/PD mixtures and PDs. After oxidation, these PAs were not detected by MS even though they were still visible at UV at 280 nm. We did neither detect any other signals that could correspond to these modified PAs nor to their possible degradation products. In one sample, namely in Acacia karroo leaves, the modified galloylated and nongalloylated PDs were not detected by UV at 280 nm either.
In our previous study [
13], where PAs in non-oxidized and oxidized extracts were analyzed by selected reaction monitoring methods, we noticed that a clear galloyl hump was detected with the galloyl specific MS/MS method in the oxidized samples, but the shape of the hump had changed and shifted accordingly to the observed hump in the UV chromatogram. The original galloylated PAs had been modified in a way that the galloyl group could still be detected with the selected reaction monitoring method [
13]. Previous studies on (-)-epigallocatechin gallate and (-)-epigallocatechin have shown that the trihydroxyphenyl B-ring is the principal site of action for oxidation and that there are no detectable products resulting from the oxidation of the galloyl moiety [
42]. However, the reaction conditions used and oxidation products obtained were fairly different in comparison to our study as the oxidation was performed with peroxyl radicals generated by the thermolysis of the azo initiator 2,2′-azobis(2,4-dimethylvaleronitrile) [
42].
In addition to galloylated PAs, two samples, namely Cephalotaxus harringtonia subsp. drupacea leaflets and Laurus nobilis leaves seemed to contain glycosylated PCs having one sugar unit attached to one PC structure. Some of these glycosylated B-type PCs were noticed to convert to glycosylated A-type PCs during the alkaline oxidation without the cleavage of the sugar unit. In addition, the formation of additional ether linkages to A-type PCs was detected.