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Article
Peer-Review Record

Comparison of Widely Targeted Metabolomics and Untargeted Metabolomics of Wild Ophiocordyceps sinensis

Molecules 2022, 27(11), 3645; https://doi.org/10.3390/molecules27113645
by Jinna Zhou 1, Donghai Hou 2, Weiqiu Zou 2, Jinhu Wang 1, Run Luo 2, Mu Wang 3,* and Hong Yu 4,*
Reviewer 1:
Reviewer 2:
Reviewer 3: Anonymous
Molecules 2022, 27(11), 3645; https://doi.org/10.3390/molecules27113645
Submission received: 21 April 2022 / Revised: 1 June 2022 / Accepted: 3 June 2022 / Published: 6 June 2022

Round 1

Reviewer 1 Report

I don't think there is enough novelty/significance in this work and the English fluency is very poor and also enough references were not cited. Literature search by the author about this work is very poor. I reject this manuscript for publication.

Author Response

Reply to Reviewer #1

Dear Reviewer,

Thank you very much for your time involved in reviewing the manuscript and your very encouraging comments on the merits.

Comments: “I don't think there is enough novelty/significance in this work and the English fluency is very poor and also enough references were not cited. Literature search by the author about this work is very poor. I reject this manuscript for publication.”

Response:We appreciate your clear and detailed feedback and hope that the explanation has fully addressed all of your concerns. Your comments made us aware of the problem with the article. Therefore, fully consider your comments and make revisions in the process of rewriting the article. First of all, this paper was a comparative study on the metabolome of Ophiocordyceps sinensis, hoping that the comparison results of the two methods can provide methodological guidance for Ophiocordyceps sinensis. Secondly, the rewritten article has been revised by professional teachers and language editing companies, hoping to ensure your smooth reading. We also strengthened reference reading and citation, with 43 references cited in our study. Your comments are very important to the revision of the article, and we look forward to your comments.

We attach the modified documents and records.

Author Response File: Author Response.pdf

Reviewer 2 Report


Comments for author File: Comments.pdf

Author Response

Reply to Reviewer #2

Dear Reviewer,

Thank you very much for giving us an opportunity to revise our manuscript, and we also appreciate you very much for your positive and constructive comments and suggestions on our manuscript.

Comments: “This manuscript describes the explore metabolites present in stroma and sclerotia of Ophiocordyceps sinensis. Researchers have used both targeted and untargeted approaches to address the following:

  • The difference between the metabolites between the stroma and sclerotia.
  • Comparing the differences by using various basic Stastical analysis.
  • Comparing general metabolite profile towards biosynthesis and pathway analysis.
  • Comparing targeted Vs untargeted metabolomics approaches.

Here experimental design seems to be quite simple for both the omics analysis, but the conclusions and the data interpretation done by the authors are of highly importance that demonstrates advantages between targeted and untargeted methods. Here they have just done the profiling experiment and the data has been reported as just identified species without proper conclusions or interpretations on the identified metabolites.”

Thank you very much for your opinion. We have rewritten the article based on your comments, placing more emphasis on the methods, results, and initial discussion of the mechanism. In the remainder of this letter, we discuss each of your comments individually along with our corresponding responses. To facilitate this discussion, we first retype your comments in italic font and then present our responses to the comments.

Comment 1: Results/methods section should contain the details of obtaining the 778 metabolites, where did they get these transitions and how did they identify the metabolites.

Response 1: Thank you very much for your professional review, which was a great help in revising the article. The identification of metabolites is the key and difficult point of the metabolome. We have highlighted this work in the article, and the methods and results are presented in the article. Specifically, databases for metabolite identification were described in the “Methods”.

Comment 2,3: Results section needs to be re written, this section reads to me like methods section. Similar sentences are repeated in both of these sections. In the results section, it would be better to explain the obtained results in detail and with detailed explanations of its importance.

Response 2,3: Your comment reminds us to focus on the description of the results, which is crucial to the structure of the article. We have rewritten the Results section to describe the research results in detail. On the other hand, we also explain the obtained results in detail and with detailed explanations of its importance.

Comment 4: The detailed list of the both the targeted metabolites and untargeted metabolites masses need to be disclosed in the supplementary list. This will help the readers to replicate the methodology.

Response 4: Thank you for your careful observation to make the revision of the article more specific. We have added details of differential metabolites in the article, as shown in Table 1 and Table 2.

Table 1 Differential metabolites in samples of the widely targeted metabolomics

Number

Name

m/z

VIP

P-vlue

RT(min)

1

N-Acetyl-L-phenylalanine

206.10

3.910

0.0058

5.877

2

5-Methyltetrahydrofolic acid

458.20

3.479

0.0006

3.280

3

Riboflavine

377.10

2.906

0.0064

5.056

4

Tripdiolide

377.20

2.787

0.0110

5.136

5

N-Acetyl-L-leucine

174.10

2.721

0.0030

5.377

6

4-Hydroxy-3-methoxymandelate

181.10

2.431

0.0015

3.273

7

Bromocriptine

654.20

2.346

0.0351

12.035

8

Lumichrome

243.10

2.051

0.0034

6.697

9

N1-Methyl-2-pyridone-5-carboxamide

153.10

2.049

0.0033

2.628

10

Nicotinic acid adenine dinucleotide

664.10

2.023

0.0006

0.753

11

Tetrahymanol

443.40

1.987

0.0130

10.573

12

Citrostadienol

427.40

1.906

0.0025

12.285

13

11β-Hydroxyandrost-4-ene-3,17-dione

303.20

1.851

0.0231

6.838

14

Pyridoxine

170.10

1.811

0.0417

1.552

15

Trans-zeatin-riboside

352.00

1.717

0.0439

4.310

16

3-(Carboxymethylamino)propanoic acid

148.10

1.712

0.0276

0.672

17

L-Arginine

175.10

1.704

0.0022

0.600

18

2-Picolinic acid

124.00

1.701

0.0236

1.326

19

Melibiose

341.10

1.699

0.0011

4.546

20

Salsolinol

180.10

1.695

0.0113

2.266

21

L-Homoserine

120.10

1.680

0.0005

0.671

22

L-Threonine

120.10

1.673

0.0004

0.640

23

Gemcitabine

264.10

1.671

0.0290

0.745

24

L-Homoglutamic acid

162.10

1.665

0.0176

0.728

25

Hesperidin

611.20

1.661

0.0002

6.809

26

Flavin adenine dinucleotide (FAD)

786.20

1.658

0.0386

4.082

27

Isodiospyrin

375.10

1.648

0.0332

11.278

28

3-Aminoisobutanoic acid

104.10

1.620

0.0154

0.940

29

Cupressuflavone

539.10

1.608

0.0207

9.667

30

Aminomalonic acid

120.00

1.601

0.0004

0.655

31

L-Citrulline

176.10

1.599

0.0075

0.660

32

N,N-Dihydroxy-L-phenylalanine

198.10

1.595

0.0235

2.315

33

Docosahexaenoic acid

329.20

1.572

0.0204

12.603

34

5-Methyl-2-furaldehyde

111.00

1.566

0.0144

0.755

35

13(S)-HPOT

311.20

1.538

0.0104

11.465

36

5-Carboxyvanillic acid

213.00

1.522

0.0355

3.522

37

Isopulegol

155.10

1.483

0.0001

2.460

38

Serotonin

177.10

1.467

0.0280

2.612

39

Dipterocarpol

443.40

1.466

0.0038

12.052

40

1-Aminocyclopropanecarboxylic acid

102.00

1.460

0.0020

0.700

41

Betaine aldehyde

102.10

1.443

0.0495

0.753

42

Phenethylamine

122.10

1.441

0.0222

2.820

43

Thiamine

265.10

1.425

0.0386

0.701

44

7-Hydroxyflavone

239.10

1.418

0.0421

0.562

45

Cytosine

112.10

1.412

0.0285

0.630

46

6,8-Diprenylnaringenin

409.20

1.409

0.0017

12.621

47

D-Proline

116.10

1.366

0.0438

0.755

48

L-Ornithine

133.10

1.365

0.0129

0.550

49

5-(3-pyridyl)-2-hydroxytetrahydrofuran

166.10

1.357

0.0111

2.803

50

2-carboxybenzaldehyde

151.00

1.333

0.0374

3.072

51

L-Proline

116.10

1.309

0.0166

0.730

52

4-Hydroxybenzaldehyde

123.00

1.287

0.0313

1.905

53

6-Aminocaproic acid

132.10

1.282

0.0170

1.837

54

Sarsasapogenin

417.30

1.276

0.0167

12.084

55

L-Histidine

156.10

1.269

0.0245

0.590

56

Vanillic acid

169.00

1.251

0.0460

3.776

57

(+)-Pteryxin

387.10

1.236

0.0343

11.106

58

L-Asparagine

133.10

1.223

0.0400

0.640

59

p-Aminobenzoate

138.10

1.220

0.0273

0.736

60

Carnosol

329.20

1.202

0.0026

12.147

61

5-Aminolevulinate

132.10

1.201

0.0230

1.555

62

(S)-(-)-perillyl alcohol

135.10

1.200

0.0450

11.602

63

Ethyl 3,4,5-trimethoxybenzoate

241.10

1.170

0.0047

0.529

64

5-Aminovaleric acid

118.10

1.157

0.0452

1.108

65

Cardanol

303.30

1.148

0.0293

12.688

66

1H-Indole-2,3-dione

148.00

1.145

0.0467

2.794

67

Oxymorphone

302.10

1.133

0.0405

11.184

68

Ailanthone

377.20

1.121

0.0307

3.687

69

β-sitosterol

397.40

1.085

0.0096

12.930

70

5,6-DHET

339.30

1.080

0.0264

13.034

71

Anacrotine

352.20

1.024

0.0233

9.550

 

Table 2 Differential metabolites in samples of the untargeted metabolomics

Number

Name

m/z

VIP

P-vlue

RT(min)

1

Sancycline

414.14

2.349

0.0190

5.185

2

Vignatic acid B

519.29

2.284

0.0151

4.656

3

Glycyrin

382.14

2.191

0.0123

7.114

4

4'-O-Methylkanzonol W

350.12

2.134

0.0182

7.115

5

Pirbuterol

240.15

2.009

0.0362

0.713

6

Neotame

378.22

1.978

0.0126

4.295

7

Rubrophen

380.13

1.963

0.0124

7.810

8

5'-Dehydroadenosine

265.08

1.916

0.0058

3.025

9

Nï‰-hydroxy-L-arginine

190.11

1.846

0.0102

0.607

10

Geniposidic acid

374.12

1.840

0.0031

4.467

11

3-Phenylpropanoic acid

150.07

1.797

0.0457

4.055

12

L-Arginine

174.11

1.783

0.0210

0.625

13

Phthalic acid

166.03

1.716

0.0327

0.894

14

Methionylleucine

262.14

1.652

0.0132

3.654

15

Epalrestat

319.03

1.635

0.0157

0.613

16

N-Phenyl-beta-D-glucopyranosylamine

255.11

1.632

0.0160

2.719

17

Tes (buffer)

229.06

1.618

0.0427

0.648

18

4-Pyridoxic acid

183.05

1.592

0.0288

2.897

19

(2R)-2-î²-gdimboa

373.10

1.584

0.0148

1.071

20

Ethosuximide

141.08

1.571

0.0029

2.716

21

12-Azabenz[a]anthracene

229.09

1.569

0.0064

9.210

22

Vorinostat

264.15

1.551

0.0264

3.953

23

(Methylthio)pyrazine

126.03

1.540

0.0055

0.695

24

Nicotinamide adenine dinucleotide

663.11

1.537

0.0189

0.979

25

Acmimycin

346.17

1.512

0.0052

1.228

26

Pentothal

242.11

1.439

0.0071

2.868

27

Phenylethyl alcohol

122.07

1.438

0.0016

4.042

28

Coumarin

146.04

1.433

0.0033

1.208

29

Pentobarbital

226.13

1.425

0.0156

0.710

30

Doxercalciferol

412.33

1.417

0.0089

9.951

31

Vitamin D2

396.34

1.416

0.0418

9.957

32

2-Hydroxycinnamic acid

164.05

1.409

0.0019

1.206

33

5,10-Methenyltetrahydrofolate

456.16

1.409

0.0010

0.697

34

Bicine

163.08

1.407

0.0254

0.655

35

Delta-guanidinovaleric acid

159.10

1.399

0.0021

1.085

36

L-Alanyl-L-proline

186.10

1.376

0.0006

0.706

37

Noradrenaline

169.07

1.374

0.0006

0.706

38

5-Oxidanidyl-5-oxidanylidenenorvalylarginine

302.15

1.372

0.0086

0.704

39

Febrifugine

301.14

1.354

0.0369

4.430

40

L-Tyrosine

181.07

1.353

0.0006

1.040

41

Hydroxytorsemide

364.12

1.338

0.0008

0.665

42

L-dopa

197.07

1.324

0.0220

0.992

43

Aspirin

180.04

1.322

0.0213

0.991

44

Piracetam

142.07

1.318

0.0225

1.405

45

Boldenone undecylenate

452.33

1.310

0.0129

9.950

46

γ-L-glutamyl-L-tyrosine

310.12

1.303

0.0027

2.800

47

N-acetyl-L-tyrosine

223.08

1.297

0.0248

3.208

48

Val-ser

204.11

1.286

0.0006

0.707

49

Methohexital

262.13

1.284

0.0147

3.621

50

Succinyl proline

215.08

1.278

0.0174

0.991

51

Benzoic acid

122.04

1.275

0.0028

0.744

52

Piperonyl sulfoxide

324.18

1.272

0.0163

10.098

53

Reticuline

329.16

1.270

0.0141

0.652

54

Liafensine

366.19

1.258

0.0013

9.830

55

Dihydroxyphenylalanine

197.07

1.245

0.0202

0.884

56

Lumichrome

242.08

1.244

0.0138

5.674

57

D-Xylonic acid

166.05

1.243

0.0044

0.649

58

DL-Mevalonic acid

148.07

1.233

0.0073

0.693

59

Ethenodeoxyadenosine

275.10

1.231

0.0411

1.428

60

Pro-gln

243.12

1.224

0.0034

0.692

61

Mebutamate

232.14

1.222

0.0116

0.718

62

Pipemidic acid

303.13

1.221

0.0068

1.349

63

γ-Glutamyl-S-(1-propenyl) cysteine sulfoxide

306.09

1.221

0.0451

3.240

64

11-Nitro-1-undecene

199.16

1.209

0.0355

6.186

65

Asp-tyr

296.10

1.203

0.0015

2.456

66

7-Formyldehydrothalicsimidine

411.17

1.199

0.0163

0.680

67

N2-(1-Carboxyethyl)-2'-deoxyguanosine

339.12

1.191

0.0184

1.391

68

Deoxyadenosine

251.10

1.191

0.0005

3.118

69

Coumarone

118.04

1.190

0.0272

1.210

70

6-Hydroxy-5-methoxyindole glucuronide

339.10

1.172

0.0290

4.627

71

1-Linoleyl-sn-glycerol 3-phosphate

434.24

1.170

0.0394

9.579

72

Choline o-sulfate

183.06

1.160

0.0058

0.664

73

4-Hydroxybenzaldehyde

122.04

1.157

0.0381

1.216

74

L-Egothioneine

229.09

1.154

0.0274

0.699

75

1-Stearyl estercitric acid

444.31

1.148

0.0036

9.412

76

NS-102

261.07

1.144

0.0014

4.748

77

N-Ribosylhistidine

287.11

1.141

0.0038

0.660

78

N-Acetylmuramic acid

293.11

1.134

0.0177

1.363

79

4-Aminopyridine

94.05

1.134

0.0206

0.627

80

Porphobilinogen

226.10

1.117

0.0209

2.900

81

N-Phenylacetylglutamic acid

265.09

1.108

0.0029

2.371

82

Carglumic acid

190.06

1.100

0.0143

0.605

83

N-Methylethanolamine phosphate

155.04

1.093

0.0420

0.654

84

N-Acetyl-L-glutamic acid

189.06

1.091

0.0172

1.183

85

N2-(carboxymethyl)arginine

232.12

1.089

0.0172

0.690

86

Lodenosine

253.10

1.084

0.0351

9.214

87

Arecoline

155.09

1.070

0.0291

0.715

88

Diphenolic acid

286.12

1.067

0.0079

0.659

89

Gabapentin

171.13

1.052

0.0414

4.803

90

γ-Aminobutyric acid

103.06

1.052

0.0111

0.639

91

Phe-gln

293.14

1.043

0.0090

3.321

92

Bardoxolone methyl

505.32

1.029

0.0210

9.358

93

Indospicine

173.12

1.017

0.0464

1.433

94

3'-Deaminofusarochromanone

277.13

1.015

0.0431

2.437

95

2'-Deoxycytidine

227.09

1.014

0.0314

4.673

96

Troxipide

294.16

1.003

0.0140

2.704

 

 

Comment 5: It is not clear from the figures and the methods section, that how many replicates did they use to obtain the conclusions, from the PCA plots it seems to be 3 replicates, are they biological or technical replicates.

Response 5: We are very sorry for our negligence of describe. In fact, we used 3 biological replicates, and added to the Methods section of the manuscript.

Comment 6: The figures in the article is not clear, it needs to be redrawn by increasing the font.

Response 6: It is really true as Reviewer suggested that figures in the article is not clear. Therefore, we have made appropriate adjustments to the image.

Comment 7: Figure 2, column chart needs to be redrawn in another format, the stacked format is bit confusing and can’t read any text in the figure.

Response 7: We grateful your advice, as you said that the stacked format is bit confusing and can’t read any text in the figure. We redrawn the column chart and plotted the relative abundance of column chart the top 20 metabolites according to the VIP value to observe the difference between OSBSz and OSBSh.

Comment 8: There is a lack of explanation of the observed metabolites in respective stroma and sclerotia samples. I suggest researchers to explain the reasons behind these metabolites and why do we observe the similar and different in this stroma and sclerotia samples.

Response 8: Those comments are all valuable and very helpful for revising and improving our paper, as well as the important guiding significance to our researches. In the Results and Discussion section of the article, we have added descriptions of some metabolites. We found important metabolites responsible for the difference between OSBSz and OSBSh, and these metabolites play important roles in the growth of the stroma and sclerotia.

Comment 9: I would suggest to researchers to describe the mechanisms behind the common components that were found in these two methods.

Response 9: Special thanks to you for your good comments. Based on your suggestion we also explored he common components that were found in these two methods in the Discussion section and they have a particular role for OSBSz and OSBSh.

Comment 10: The article needs to rewritten focusing the broad profiling experiment. Some of the experimental details are repeated both in the methods section and also in the results section. Repetition of the same thing multiple times is not good.

Response 10: Thank you for taking the time to review our manuscript, as you said, there are many problems with this article and your suggestions are crucial to the revision of the manuscript. Therefore, in the process of rewriting the article, we consider your comments to enrich the article. In the discussion section of the article, there is also more emphasis on discussing the mechanism of difference.

We would like to take this opportunity to thank you for all your time involved and this great opportunity for us to improve the manuscript. We hope you will find this revised version satisfactory.

 

Author Response File: Author Response.pdf

Reviewer 3 Report

The manuscript described performing both targeted and untargeted approach to profile the metabolome of Ophiocordyceps sinensis. Overall, the study design and result is OK. However, a significant writing quality improvement is required for this manuscript. I just listed some typos or grammar errors caught by me. The authors need to read the manuscript carefully and fix all the typos and grammar errors.

(1) Line 49 delete “analysis techniques”

(2)Line 53, change “different samples. Such as” to “different samples, such as”

(3)Line 65-66 change “to detected” to “to detect”

(4)Line 233 “liquid phase” should be “liquid chromatography”

(5)Line 233, 237 “mass spectrometry” should be “mass spectrometer”

(6)Line 245 insert spaces to “1minat” and “100mg”

(7)Line 259 “drained” should be “dried down”

Other concerns:

(1)Line 113, could authors’ column separate L or D-arginine? If not, the authors should delete L or D before arginine.

(2)Figure 2 and 4, the authors should provide high resolution figure.

Author Response

Reply to Reviewer #3

We are very grateful to your comments for the manuscript. According with your advice, we tried our best to amend the relevant part and made some changes in the manuscript. These changes will not influence the content and framework of the paper. All of your questions were answered below. 

Comments: “The manuscript described performing both targeted and untargeted approach to profile the metabolome of Ophiocordyceps sinensis. Overall, the study design and result is OK. However, a significant writing quality improvement is required for this manuscript. I just listed some typos or grammar errors caught by me. The authors need to read the manuscript carefully and fix all the typos and grammar errors.

(1) Line 49 delete “analysis techniques”

(2)Line 53, change “different samples. Such as” to “different samples, such as”

(3)Line 65-66 change “to detected” to “to detect”

(4)Line 233 “liquid phase” should be “liquid chromatography”

(5)Line 233, 237 “mass spectrometry” should be “mass spectrometer”

(6)Line 245 insert spaces to “1minat” and “100mg”

(7)Line 259 “drained” should be “dried down”

Other concerns:

(1)Line 113, could authors’ column separate L or D-arginine? If not, the authors should delete L or D before arginine.

(2)Figure 2 and 4, the authors should provide high resolution figure.”

Comment 1:(1) Line 49 delete “analysis techniques”

(2)Line 53, change “different samples. Such as” to “different samples, such as”

(3)Line 65-66 change “to detected” to “to detect”

(4)Line 233 “liquid phase” should be “liquid chromatography”

(5)Line 233, 237 “mass spectrometry” should be “mass spectrometer”

(6)Line 245 insert spaces to “1minat” and “100mg”

(7) Line 259 “drained” should be “dried down”

Response 1: Thank you for the detailed review. We have carefully and thoroughly proofread the manuscript to correct all the grammar and typos. We rewritten the article according to the review comments. LetPub for its linguistic assistance during the preparation of this manuscript.

Comment 2:Line 113, could authors’ column separate L or D-arginine? If not, the authors should delete L or D before arginine.

Response 2:Thank you for your valuable advice, in fact, there are differences between L-arginine and D-arginine. L-arginine is an essential amino acid for the human body, which cannot be synthesized by the human body and needs to be ingested from food. D-arginine is derived from L- Arginine is used as raw material, and it is obtained by racemization reaction.

Comment 3:Figure 2 and 4, the authors should provide high resolution figure.

Response 3: It is really true as Reviewer suggested that figures in the article is not clear. We have improved the resolution of the figure.

I wish this revision will be acceptable for publication in your journal.

Thank you for your consideration. I am looking forward to hearing from you.

Author Response File: Author Response.pdf

Round 2

Reviewer 1 Report

The manuscript can be published after minor revisions. See below:

The authors have improved the manuscript quite better from the previous version. I still would suggest the authors to revise the manuscript more thoroughly, especially the abstract part (writing needs to be improved), and make sure to revise all other sections including the conclusion part once or twice. 

Author Response

Reply to Reviewer #1

Dear Reviewer,

Thank you very much for giving us an opportunity to revise our manuscript, and we also appreciate you very much for your positive and constructive comments and suggestions on our manuscript.

Comments: “The manuscript can be published after minor revisions. The authors have improved the manuscript quite better from the previous version. I still would suggest the authors to revise the manuscript more thoroughly, especially the abstract part (writing needs to be improved), and make sure to revise all other sections including the conclusion part once or twice.”

Response:We appreciate your clear and detailed feedback and hope that the explanation has fully addressed all of your concerns. Therefore, we carefully revised the abstract, discussion and other sections. Thank you very much for your professional review and pointing out the direction for our manuscript. We sincerely hope that this manuscript can be published and look forward to your review.We would like to take this opportunity to thank you for all your time involved and this great opportunity for us to improve the manuscript. We hope you will find this revised version satisfactory.

Author Response File: Author Response.pdf

Reviewer 2 Report

Thanks for considering all those coments and taking time to revise the manuscript.  the paper reads much better now. is it possible to increase the font of x and y axis of figure 4.

Author Response

Dear Reviewer, 

Thank you very much for your time involved in reviewing the manuscript and your very encouraging comments on the merits.
Comments: “Thanks for considering all those coments and taking time to revise the manuscript. the paper reads much better now. is it possible to increase the font of x and y axis of figure 4. ”
Response: Thank you very much for your comments in the round 1 of comments, your comments are very professional and detailed. We made some changes to the abstract and discussion, and also adjusted Figure 4. Thanks again for your suggestion, your comments are very important to the revision of the article, and we look forward to your comments.

Author Response File: Author Response.pdf

Reviewer 3 Report

I'm glad to see the authors revised the manuscript carefully. I think the writing quality of the manuscript is OK now. In the previous round of review, I asked the authors if their LC column was able to separate L- or D- metabolites. The authors didn't understand my question. I know the L- or D- are different metabolites and have different physiological functions, but I’m talking about separation of them on a LC column. It is impossible to separate L- or D- metabolites on C18 column without derivatization. The authors should check the raw data carefully to confirm this.  The authors should remove L-/D- in text and heatmaps if this is true.

Author Response

Reply to Reviewer #3

Thank you very much for giving us an opportunity to revise our manuscript, and we also appreciate you very much for your positive and constructive comments and suggestions on our manuscript. Your professional advice is essential for the revision of the article.

Comment: “I'm glad to see the authors revised the manuscript carefully. I think the writing quality of the manuscript is OK now. In the previous round of review, I asked the authors if their LC column was able to separate L- or D- metabolites. The authors didn't understand my question. I know the L- or D- are different metabolites and have different physiological functions, but I’m talking about separation of them on a LC column. It is impossible to separate L- or D- metabolites on C18 column without derivatization. The authors should check the raw data carefully to confirm this.  The authors should remove L-/D- in text and heatmaps if this is true.”

Response:We are very sorry for misunderstanding your advice before, we take your advice very seriously, and consulted experts and teachers due to our lack of knowledge. As you said, it is impossible to separate L- or D- metabolites on C18 column without derivatization, and we remove L-/D- in text and heatmaps. In addition, we focused on revising the abstract and discussion sections. Thanks again for your professional review.

 

Author Response File: Author Response.pdf

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