2.1. Identification of Flavonoids in Arabidopsis thaliana (L.)
Flavonoids are a kind of secondary metabolite of plants that widely exist in different plants [
19,
20]. They play important roles in plant growth, development, flowering, fruiting and disease prevention. Flavonoids contain a lot of active hydroxyls which may react with nerve agents to produce potential biomarkers. Q–TOF MS was used to analyze flavonoids in the acetonitrile extract of
Arabidopsis thaliana (L.) leaves that were not exposed to Tabun. Both full scan and product ion scan modes were performed. The extracted ion chromatograms (EICs) of the quasi-molecular ions ([M + H]
+) from three flavonoids not exposed to Tabun are shown in
Figure 1. The [M + H]
+ m/
z value of compound
1, compound
2 and compound
3 were calculated as 741.2237, 595.1657 and 579.1708, respectively. The collision energy was optimized to produce the PIMS with good quality. The corresponding PIMS are shown in
Figure 2,
Figure 3 and
Figure 4, respectively.
For compound
1,
m/
z 741.2237 was set as parent ion and three product ions were formed in the PIMS (
Figure 2). The neutral loss between
m/
z 741 and
m/
z 595 was 146, which means compound
1 could have a rhamnose structure (rhamnose, C
6H
12O
4, 148 Da). The neutral loss between
m/
z 741 and
m/
z 433 was 162 + 146, which means compound
1 could have a glucoside structure (glucoside, C
6H
12O
5, 164 Da). The neutral loss between
m/
z 741 and
m/
z 287 was 162 + 146 + 146, which means compound
1 could have another rhamnose structure. The product ion
m/
z 287 was formed from the kaempferol structure (kaempferol, C
15H
10O
6, 286 Da). The fragmentation patterns were consistent with references [
21,
22], and the substance was identified as kaempferol-3-
O-rhamnosyl-glucoside-7-
O-rhamnoside (C
33H
40O
19). This chemical was reported to be present in
Arabidopsis thaliana (L.) [
21].
For compound
2 and compound
3, similar neutral losses were observed in the PIMS. In the PIMS of compound
2 (
Figure 3), the parent ion was set as
m/
z 595.1657 and two product ions were formed. The neutral loss between
m/
z 595 and
m/
z 433 was 162 and the neutral loss between
m/
z 595 and
m/
z 287 was 162 + 146, which means compound
2 could have a glucoside structure and a rhamnose structure. In the PIMS of compound
3 (
Figure 4), the parent ion was set as
m/
z 579.1708 and two product ions were formed. The neutral loss between
m/
z 579 and
m/
z 433 was 146 and the neutral loss between
m/
z 579 and
m/
z 287 was 146 + 146, which means compound
3 could have two rhamnose structures. According to the fragmentation pathways, compound
2 was deduced to be kaempferol 3-
O-glucoside 7-
O-rhamnoside (C
27H
30O
15) and compound
3 to be kaempferol 3-
O-rhamnoside 7-
O-rhamnoside (C
27H
30O
14). These two chemicals were also reported to be present in
Arabidopsis thaliana (L.) [
21]. The deviations between the calculated
m/
z and observed
m/
z values of each fragment ions derived from compound
1, compound
2 and compound
3 are in
Table 1 (within 3.55 ppm),
Table 2 (within 4.30 ppm) and
Table 3 (within 1.91 ppm), respectively.
After the identification of the three flavonoids, comparison was made for the peak areas in EICs of the corresponding ([M + H]
+) ions. The EICs are shown in
Figure 1, in which the peak area of
m/
z 579.1708 (compound
3) was the largest, while the peak area of
m/
z 741.2237 (compound
1) was the least. Since the three flavonoids have similar chemical structures and similar properties, it can be inferred that among the three identified flavonoids, compound
3 was the most abundant in
Arabidopsis thaliana (L), while compound
1 was the least.
2.2. Identification of Flavonoid Adducts Formed in Arabidopsis thaliana (L.) Exposed to Tabun
The discovery of long-term biomarkers is of great significance since it can provide convincible confirmation of nerve agent exposure. In this article, three flavonoid adducts as novel potential exposure biomarkers were identified in the extracts of leaves of Arabidopsis thaliana (L.) exposed to the nerve agent Tabun. These adducts can be detected four weeks after exposure, which makes them suitable for long-term retrospective detection.
In this article, Q–TOF MS was used to analyze the acetonitrile extract of both the exposed and unexposed
Arabidopsis thaliana (L.) leaves. Both full scan and product ion scan modes were performed. By comparing the exposed plant with the plant not exposed to Tabun, two characteristic ions were identified in the full scan mass spectra at retention times of about 13.73 min, 14.50 min and 14.96 min, respectively.
Figure 5A shows EICs of the quasi-molecular ion ([M + Na]
+) of the three flavonoid adducts, which were coded as compound four, compound five and compound six, of which the
m/
z values were 898.2505, 752.1926 and 736.1977, respectively. Besides the quasi-molecular ion ([M + Na]
+) of the three flavonoid adducts, the characteristic ion
m/
z 568.1578 (EICs shown in
Figure 5B) was also found in the corresponding retention times of the three compounds.
Compound four, compound five and compound six were the reaction products of Tabun with compound
1, compound
2 and compound
3, respectively. There were nine hydroxyls located on the sugar rings and two located on the benzene rings. In order to specify the reaction sites, PIMS of the quasi-molecular ion ([M + Na]
+) and characteristic ion
m/
z 568.1578 were collected with collision energy optimized. For compound four, compound five and compound six, the PIMS are shown in
Figure 6,
Figure 7 and
Figure 8.
In
Figure 6A, the parent ion was set as m/z 898.2505 and four product ions were formed. The parent ion
m/
z 898 lost 146, leading to the formation of
m/
z 752; lost 146 + 162, leading to the formation of
m/
z 590; and lost 146 + 146 + 162, leading to the formation of
m/
z 444. The product ion
m/
z 331 was formed from the cationized disaccharide fragment. In
Figure 7A, the parent ion was set as
m/
z 752.1926 and two product ions were formed. The parent ion
m/
z 752 lost 146, leading to the formation of
m/
z 606, and lost 146 + 162, leading to the formation of
m/
z 444. In
Figure 8A, the parent ion was set as
m/
z 736.1977 and two product ions were formed. The parent ion
m/
z 736 lost 146 leading to the formation of
m/
z 590, and lost 146 + 146, leading to the formation of
m/
z 444. In
Figure 6B,
Figure 7B and
Figure 8B, the parent ion was set as
m/
z 568.1578 and two product ions were formed. The parent ion
m/
z 568 lost 146, leading to the formation of
m/
z 422, and lost 146 + 28, leading to the formation of
m/
z 394. The neutral losses 146, 162 and 28 were due to the departure of rhamnose, glucoside and ethylene moieties through the respective fragmentations. From the fragmentation behaviors, it can be deduced that the modified site was located on a benzene ring instead of a sugar ring.
In our previous research [
17], density functional theory computation was used to compare the reactivity of the two hydroxyl groups on the benzene ring of compound
1, compound
2 and compound
3. It was found that O18 has relatively low steric hindrance and stronger nucleophilicity than O20, and is more likely to attack the P atom in the molecule of a nerve agent. Possible structures (O18 being the modified site) of the O-Ethyl
N,N-dimethyl phosphoryl modified flavonoids and fragmentation pathways of product ions are illustrated in
Figure 9,
Figure 10 and
Figure 11, respectively. The deviations between the calculated and observed
m/
z values of each fragment derived from compound four, compound five and compound six are shown in
Table 4 (within 6.14 ppm),
Table 5 (within 6.11 ppm) and
Table 6 (within 4.91 ppm), respectively.
2.3. Confirmation of the Identification of Flavonoid Adducts by a Structurally Closely Reference
Identification of chemicals by references is reliable and is usually used by chemists. In the field of verification for chemical weapon abuse, the identification of unknown chemicals is usually based on comparison with authentic reference chemicals or recorded spectra in the database [
18,
23]. In our previous work, we identified the new phosphonyl-modified flavonoid adducts by comparison with the synthesized reference, in which the synthetic route was complicated and laborious. It is not easy to synthesize and obtain every reference chemical, especially for the complicated adduct biomarkers of chemical agents with lethal toxicity. Therefore, the OPCW provided a third approach to identify the unknown chemicals by comparison with structurally closely related chemicals. When used for comparison, the spectra of the structurally closely related chemicals together with spectral interpretations must be provided [
18]. In order to confirm the identification of the structures of the three adducts without references chemicals, comparison was made to a structurally closely related reference of Isobutyl methylphosphonyl-modified flavonoid (compound seven, the structure is shown in
Figure 12), which was synthesized in-house previously. The PIMS of [M + Na]
+ m/
z 735.2024 and [M + H − C
6H
10O
4]
+ m/
z 567.1626 of compound seven was collected as shown in
Figure 13. The deviations between the calculated and observed
m/
z values of each fragment were within 4.13 ppm, as shown in
Table 7.
In
Figure 13A, the parent ion was set as
m/
z 735.2024 and two product ions were formed. The parent ion
m/
z 735 lost 146, leading to the formation of
m/
z 589, and lost 146 + 146, leading to the formation of
m/
z 443. In
Figure 13B, the parent ion was set as
m/
z 567.1626 and two product ions were formed. The parent ion
m/
z 567 lost 146, leading to the formation of
m/
z 421, and lost 146 + 56, leading to the formation of
m/
z 365. The neutral losses 146 and 56 were due to the departure of rhamnose and butylene moieties through the respective fragmentations. The possible fragmentation pathways of compound seven are shown in
Figure 14.
By comparing the PIMS and fragmentation pathways of compound four (
Figure 6 and
Figure 9), compound five (
Figure 7 and
Figure 10), compound six (
Figure 8 and
Figure 11) and compound seven (
Figure 13 and
Figure 14), we found that the four chemicals were similar in that there were fragments resulting from the neutral loss of saccharide and alkene structural units. This result showed that compound four, compound five, compound six and compound seven have similar structures, thus confirming the chemical structures of the O-Ethyl
N,N-dimethyl phosphoryl modified flavonoids.
After identifying the three new adducts, the peak area of the three adducts were compared. For adducts compound four, compound five and compound six, they are the reaction products of Tabun with compound
1, compound
2 and compound
3, respectively.
Figure 5 shows that the peak area of compound six (Tabun-modified compound
3) was the highest, while the peak area of compound four (Tabun-modified compound
1) was the least, which is consistent with that of the three flavonoids. The results indicated that among the endogenous components, which have similar chemical structures and similar properties, the xenobiotic toxicants tend to react with the abundant endogenous components and form the exposure biomarkers. Therefore, among the endogenous components that have similar chemical structures and similar properties that can react with xenobiotic toxicants, more attention should be paid to the abundant endogenous components.