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Article

Mechanochemical Synthesis and Molecular Docking Studies of New Azines Bearing Indole as Anticancer Agents

by
Mohamed S. Ibrahim
1,
Basant Farag
2,
Jehan Y. Al-Humaidi
3,
Magdi E. A. Zaki
4,
Maher Fathalla
1 and
Sobhi M. Gomha
1,5,*
1
Department of Chemistry, Faculty of Science, Islamic University of Madinah, Madinah 42351, Saudi Arabia
2
Department of Chemistry, Faculty of Science, Zagazig University, Zagazig 44519, Egypt
3
Department of Chemistry, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
4
Department of Chemistry, Faculty of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Saudi Arabia
5
Department of Chemistry, Faculty of Science, Cairo University, Cairo 12613, Egypt
*
Author to whom correspondence should be addressed.
Molecules 2023, 28(9), 3869; https://doi.org/10.3390/molecules28093869
Submission received: 20 March 2023 / Revised: 5 April 2023 / Accepted: 7 April 2023 / Published: 4 May 2023
(This article belongs to the Section Organic Chemistry)
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Versions Notes

Abstract

:
The development of new approaches for the synthesis of new bioactive heterocyclic derivatives is of the utmost importance for pharmaceutical industry. In this regard, the present study reports the green synthesis of new benzaldazine and ketazine derivatives via the condensation of various carbonyl compounds (aldehydes and ketones with the 3-(1-hydrazineylideneethyl)-1H-indole using the grinding method with one drop of acetic acid). Various spectroscopic techniques were used to identify the structures of the synthesized derivatives. Furthermore, the anticancer activities of the reported azine derivatives were evaluated against colon, hepatocellular, and breast carcinoma cell lines using the MTT technique with doxorubicin as a reference medication. The findings suggested that the synthesized derivatives exhibited potential anti-tumor activities toward different cell lines. For example, 3c, 3d, 3h, 9, and 13 exhibited interesting activity with an IC50 value of 4.27–8.15 µM towards the HCT-116 cell line as compared to doxorubicin (IC50 = 5.23 ± 0.29 µM). In addition, 3c, 3d, 3h, 9, 11, and 13 showed excellent cytotoxic activities (IC50 = 4.09–9.05 µM) towards the HePG-2 cell line compared to doxorubicin (IC50 = 4.50 ± 0.20 µM), and 3d, 3h, 9, and 13 demonstrated high potency (IC50 = 6.19–8.39 µM) towards the breast cell line (MCF-7) as compared to the reference drug (IC50 = 4.17 ± 0.20 µM). The molecular interactions between derivatives 3a-h, 7, 9, 11, 13, and the CDK-5 enzyme (PDB ID: 3IG7) were studied further using molecular docking indicating a high level of support for the experimental results. Furthermore, the drug-likeness analysis of the reported derivatives indicated that derivative 9 (binding affinity = −8.34 kcal/mol) would have a better pharmacokinetics, drug-likeness, and oral bioavailability as compared to doxorubicin (−7.04 kcal/mol). These results along with the structure–activity relationship (SAR) of the reported derivatives will pave the way for the design of additional azines bearing indole with potential anticancer activities.

Graphical Abstract

1. Introduction

Cancer is the second most common cause of death after heart disease. Cancer is the uncontrolled, rapid, and pathological proliferation of abnormal cells [1]. It claims the lives of over 9.6 million people each year [2]. Despite significant advances in the discovery of anticancer medications, there are still several barriers to cancer therapy, such as low effectiveness, excessive toxicity, and drug resistance, all of which have severely impacted patients’ normal lives [3]. As a result, one of the most important areas of current cancer research is the hunt for strong, safe anticancer agents with great selectivity [4]. Compounds possessing heterocyclic core play a significant role in designing and developing a new class of structural entities for pharmaceutical applications. Indoles represent an important structural class in drug discovery due to its important biological activities including antibacterial, antifungal [5,6], anti-inflammatory [7], antihistamine [8], antioxidant [9], anti-diabetic [10], antiviral [11], anticholinesterase [12] as well as anticancer properties, like vincristine, vinblastine, koumine, and topsentine [13,14,15,16,17,18,19,20].
On the other hand, aldazines and ketazines with a conjugated hydrazone system (C=N-N=C) were exploited in various pharmacological studies and many commercial applications. Both symmetric and asymmetric azines have demonstrated biological activities as antimicrobial, antibacterial, anti-inflammatory, antimalarial dyes, anticonvulsant, insect growth regulating, and many other activities [21,22,23,24,25]. Furthermore, several aldazine and ketazine derivatives possessed antiproliferative properties and were applied as cytotoxic agents capable of preventing cell progression in malignant cells via various mechanisms [26,27,28]. Consequently, indole hydrazones demonstrated selective and efficient cytotoxicity owing to their important favorable pharmacological properties, low toxicity, and low undesirable effects [29,30,31].
Green synthesis is an emerging field that offers significant economic and environmental advantages [32]. In this respect, choosing the reaction solvent, catalyst, and technique based on green chemistry protocols (GCPs) is of the utmost importance [33,34,35,36,37,38,39,40]. It is also vital to avoid the creation of unwanted or harmful byproducts by developing dependable, sustainable, and environmentally friendly synthesis processes [41,42,43]. The advantages of green chemistry protocols (GCPs) were harnessed by pharmaceutical production and implemented all (or most) of GCPs as far as practicable.
Recently, molecular docking was employed by many researchers as an effective tool to stimulate the potential interactions between two entities, thus guiding the design of effective therapeutic derivatives through the evaluation of its binding affinities with various enzymes [44,45,46]. In is reported that cyclin-dependent kinases (CDK) play key roles in the cell cycle, and CDK inhibitors have been widely investigated as cancer therapy agents [47], where vital interactions with residues of amino acids Asn132, Glu81, Glu12, Lys89, Gln85, Asp86, Lys129, Val18, Gln131, Lys33, Gly13, and Gly11 were demonstrated by molecular docking investigations. It was possible to determine the binding interactions of the produced derivatives to the EFP as native ligand [48,49].
Bearing the aforementioned in mind, and in the framework of our ongoing research on the synthesis of bioactive heterocyclic derivatives [42,50,51,52,53,54,55,56,57,58,59], the goal of the present study is the green synthesis of some new aldazine and ketazine derivatives, starting with 3-(1-hydrazineylideneethyl)-1H-indole and the evaluation of their potential anticancer activities, which was further supported by molecular docking studies using EFP as a native ligand [48,49]. In addition, the drug-likeness as well as SAR analysis of the reported derivatives were also investigated.

2. Results and Discussion

2.1. Chemistry

The (E)-3-(1-hydrazineylideneethyl)-1H-indole 1 [60] is a critical precursor for the synthesis of the proposed derivatives, utilizing facile and green methodology. The condensation of carbonyl compounds (aldehydes and ketones) with hydrazine 1 afforded the corresponding azines under grinding process with one drop of acetic acid. For examples, the reaction of the hydrazine 1 with aromatic benzaldehyde derivatives 2a–j give the corresponding benzaldazine derivatives 3a–j in high to exceptional yields regardless of the kind of substituents (electron-withdrawing or electron-donating group) as shown in Scheme 1.
Based on information from their 1H-NMR, mass, IR, and elemental analyses, the structure of derivatives 3a–j was validated. For the 1H-NMR spectra of the condensation products 3a–j, all lack the signal attributed to NH2 groups indicating azine formation. In addition, the imine proton CH=N- is clearly apparent at δ ~ 8.68 ppm, as well as in the presence of the expected aromatic protons. In the IR spectra, the stretching absorption of the (C=N) group was observed at v ~ 1593 cm−1. Elemental analyses accord well with the hypothesized structures 3a–j.
The efficacy of grinding as compared to the traditional heating was evaluated by comparing the yield and time of the reaction of the two methodologies. Table 1 showed that the application of the grinding process is preferable for the reported reactions, as it sped up the reaction time and increased product yields.
The ketazine series is extended by reaction of hydrazine 1, with aromatic ketones 5a,b using the grinding method to furnish ketazines 6a,b, respectively. The synthesis is simple and efficient, since nothing is added except starting ingredients and one drop of AcOH impacted by mechanical power (Scheme 1). The structure of ketazine derivatives 6a,b were confirmed using all available spectroscopic techniques (see experimental part).
Our efforts were extended to the preparation of symmetric and asymmetric heterocyclic ketazines. Thus, different acetyl heterocyclic compounds (6, 8, and 10) and isatin 12 were subjected to react with hydrazine 1 under the employed conditions to give the respective ketazines 7, 9, 11, and 13 in good yields (Scheme 2). The structures of these compounds are validated by their spectroscopic data. For example, the 1H-NMR spectrum of azine 13 showed three singlet signals at δ 2.46, 9.54, and 10.64 ppm for methyl group and two NH groups. The nine aromatic protons were resonated as multiplet signals at δ 6.81–8.26 ppm. Moreover, its mass analysis identified the molecular ion peak at m/z = 302 (37%), This is equivalent to a chemical formula (C18H14N4O).

2.1.1. Biological Evaluation

The synthesized azine derivatives were tested in vitro for inhibitory efficacy versus anticancer cell lines like HCT-116 (colorectal carcinoma), HEPG-2 (hepatocellular carcinoma), and MCF-7 (human breast adenocarcinoma) using the MTT technique. Doxorubicin, a commonly used small-molecule anticancer medication, was used as a control. The concentration of chemicals required to inhibit the development of 50% of cancer cells was represented as (μM) and is shown in Table 2 and Figure 1.
The 12 derivatives under investigation inhibit human tumor cells to various degrees. When compared to doxorubicin (IC50 = 5.23 ± 0.29 µM), derivatives 3a–h, 7, 9, 11, and 13 were tested for their capacity to inhibit the HCT-116 cell line. The synthesized derivatives’ inhibitory potency ranged from 4.27 to 52.28 µM. Derivatives 3c, 3d, 3h, 9, and 13 exhibited interesting activity with an IC50 value of 4.27–8.15 µM. Further, compounds 3e, 3f, 3g, 7, and 11 are proved to be of moderate activity with IC50 values of 10.18–33.18 µM, respectively. On the other hand, derivatives 3a and 3b demonstrated poor activity with IC50 values >40 µM.
The 12 HCT-116 inhibitors obtained were selected to be further assayed against the HePG-2 cell line and compared with doxorubicin (IC50 = 4.50 ± 0.20 µM). Derivatives 3c, 3d, 3h, 9, 11, and 13 showed excellent cytotoxic activities (IC50 = 4.09–9.05 µM). Moderate cytotoxic activities were noticed by derivatives 3a, 3f, 3g and 7 with IC50 values = 19.78–31.71 µM. Moreover, derivatives 3a and 3b displayed low values of IC50 > 35 µM. Finally, many derivatives were evaluated against the breast cell line (MCF-7). Compounds 3d, 3h, 9, and 13 demonstrated high potency (IC50 = 6.19–8.39 µM) compared to the reference drug (IC50 = 4.17 ± 0.20 µM). Derivatives 3c, 3e, and 11 proved to be moderately active with IC50 = 13.27–17.02 µM. The other five azines are inactive and registered IC50 > 50 µM. Based on earlier research, we discovered that HePG-2 was the most effective growth inhibitor among the cells tested, while MCF-7 was the least effective.

2.1.2. SAR Analysis for Aldazine Derivatives 3a–h

Investigations into the data from the evaluation of the analyzed derivatives’ inhibitory effects against three different tumor cell lines make it clear that certain structural characteristics of the tested derivatives are necessary for specific activities to exist. Based on previous findings, it was discovered that substituting the phenyl ring with a mono substituent bromo atom at the para position in derivative 3d and a di substituent chloro atom at the ortho and para positions in derivative 3h resulted in the most potent cytotoxic activities vs. the reference medication, doxorubicin, against the HCT-116 cell line. Introduction of the Cl group was a small size electron-withdrawing moiety, which also included3c high activity, while nitro group 3e is bulky and steric. In general, derivatives with meta substitution on the phenyl ring 3f were less potent than those with para-substituted derivatives 3g [61]. Finally, derivatives 3a and 3b had weak activity against three cell lines.

2.1.3. SAR Analysis for Ketazine Derivatives 7, 9, 11 and 13

Based on the past outcomes, it was noticed that two indole rings in derivative 9 gave the most potent cytotoxic activities against HePG-2 and HCT-116 cell lines in comparison with the reference drug, doxorubicin. In addition, the analogs with 5-membered aromatic heterocycle exhibited higher inhibitory activity than 6-membered aromatic heterocycle analogs [62,63]. Therefore, the derivative with indolin-2-one ring 13 displayed stronger inhibitory ability than compound with chromen-2-one ring 11. Finally, derivative 7 had weak activity against three cell lines.

2.2. Molecular Docking Studies

The EFP (N-{1-[cis-3-(acetylamino)cyclobutyl]-1H-imidazol-4-yl}-2- (4-methoxy phenyl)acetamide) is known to inhibit the enzyme CDK-5 as it exhibits significant interactions with the CDK-5 enzyme’s active site residues [48,49] (Figure 2). Consequently, molecular docking was exploited to stimulate the binding affinities of the synthesized derivatives showing potential anti-tumor activities by locating its structure into the binding site of CDK-5 enzyme (PDB 3ig7) (obtained from the PDB repository at https://www.rcsb.org (accessed on 30 January 2023) with docking data using EFP as a reference ligand) [48,49]. The results of molecular docking simulations indicated that derivatives 3a–h, 7, 9, 11, and 13 exhibited binding energy values between −8.34 to −7.18 kcal/mol. The negative free energy values pertain to the spontaneity of binds (Table 3, Figure 3 and Figure S1).
As shown in Table 3, derivative 3d was tightly bound into CDK-5 enzyme through one hydrogen bond acceptor via its nitrogen of hydrazinylidene moiety with Asn132. The docking study revealed that derivatives 3e, 3f, 3h, and 13 showed the hydrogen bond donor between NH of these ligands and Glu81 from the enzyme. Additionally, derivative 3f shows an additional another H-bond donor between the oxygen atom of phenol ring and Asp86. Furthermore, derivative 3h shows another additional H-bond acceptor between the chloro atom of the ligand and Lys89. A 3D simulation of the binding mode of derivative 3g in CDK-5 enzyme showed two H-bonds: one H-bond donor between the oxygen of the phenol skeleton and Gln131, and another H-bond acceptor between the nitrogen of the hydrazinylidene moiety with Lys33, respectively. Due to a strong hydrogen bond donor between the NH of the ligand and Gln131 from the enzyme in addition to another mode of interaction known as ligand exposure, derivative 9 had the highest binding energy to the CDK-5 enzyme (−8.34 Kcal/mol), according to the docking studies.
Alternatively, compound 13 also exhibited a potential inhibitory action for the CDK-5 enzyme (−8.06 Kcal/mol) via a. In addition, there is another hydrogen bond acceptor between the amino acid Lys89 and the carbonyl of the indolin-2-one ring. The role of hydrogen bonds in establishing out the ligand binding specificity [64,65], and its significance for biomacromolecules’ properties and structures has been defined theoretically and experimentally [64]. The results indicated that the comparable positions and orientations within the investigated ligands assumed the binding site of the target enzyme. Thus, the outcomes of molecular docking simulation results indicated that the synthesized derivatives possess higher binding energies than the standard inhibitor (EFP).

Drug-Likeness and Oral Bioavailability Analysis of the Most Potent Compounds and Standard

In the early stages of drug discovery, pharmacokinetic property analysis of prospective drugs is essential. According to Lipinski and his team [66], drug-like compounds must obey the rule of five (RO5), i.e., molecular weight (MW) ≤ 500 Da, number of hydrogen bond donor (HBD’s) ≤ 5, and number of hydrogen bond acceptor (HBAs) ≤ 10. The values of the most powerful chemicals are within the permitted range as specified in the RO5, as seen in Tables S1–S3. The polarity of the identified derivatives and reference drug was examined using the total polarity surface area (TPSA), whose acceptable value is between 20 and 130. It is interesting to note that the chosen anticancer and standard have a high likelihood of being absorbed in the human intestine, a major pharmacokinetic characteristic in the development of new drugs. Additionally, the metabolic activities of the chosen drug candidates were predicted using microsomal enzymes (cytochrome P450 inhibitors). All of the chosen drugs and standards do not block any of the cytochrome P450 enzymes, which improve their metabolism as possible therapeutic drugs [67].

3. Experimental Section

3.1. Chemistry

3.1.1. Materials and Methods

The reported synthetic approach did not include any further purification of any of the reagents or solvents used. Distilled water was used in all experiments. Using Merck silica gel GF254 plates, analytical thin-layer chromatography (TLC) was carried out. The melting points were determined using the Gallenkamp equipment (Shanghai Jiahang Instruments Co., Shanghai, China). The IR spectra (KBr) were obtained using an FTIR spectrometer, Thermo Scientific Nicolet iS10 (SpectraLab Scientific Inc., Markham, ON L3R 3V6, Canada). The 1H NMR spectra was detected in DMSO-d6 using a JEOL’s NMR spectrometer (500 MHz). The mass analysis was performed using a Thermo Scientific GC/MS model ISQ and/or an Agilent LC-MSD IQ Infinity II 1260 ((SpectraLab Scientific Inc., Markham, ON L3R 3V6, Canada). Elemental analysis (C, H, and N) were executed with the Perkin-Elmer 2400 apparatus (Elementar Analysensysteme GmbH, Langenselbold, Germany).

General Procedure for the Synthesis of Hydrazones 3a–j, 5a,b, 7, 9, 11 and 13

Method A: a mixture of (E)-3-(1-hydrazineylideneethyl)-1H-indole 1 (1 mmol, 0.173 g) and the appropriately substituted aldehyde 2a–j or ketone, specifically, acetophenones 4a,b, 2-acetylthiophene 6, 3-acetylindole 8, or 3-acetycoumarin 10, or isatin 12 (1 mmol for each) in acetic acid (20 mL) was refluxed for 3–5 h. (monitored by TLC). The produced precipitate was separated by filtering, followed by washing with methanol, drying, and recrystallization from the appropriate solvent to produce, in turn, products 3a–j, 5a,b, 7, 9–11, and 13.
Method B: one drop of acetic acid was added to a mixture of (E)-3-(1-hydrazine ylideneethyl)-1H-indole 1 (1 mmol, 0.173 g) and the substituted aldehyde 2a–j or ketone, specificall, acetophenones 4a,b, 2-acetylthiophene 6, 3-acetylindole 8, or 3-acetycoumarin 10 or isatin 12 (1 mmol for each). Then the mixture was mashed with a pounder in a mortar at 25 °C. When the reaction progresses, the mixture turns into a pasty mixture, which finally solidifies for 20–30 min on completion. TLC (EtOAc: n-hexane, 1:1, v/v) was used to monitor reaction progress. To get products 3a–j, 5a,b, 7, 9–11, or 13, the reaction mixture was drained and filtered, and the impure compounds were purified by recrystallization from the suitable solvent. The spectrum data and physical constants for the compounds are listed below:
3-((E)-1-(((E)-Benzylidene)hydrazineylidene)ethyl)-1H-indole (3a)
Yellow solid (85%); m.p. 189–191 °C (EtOH); IR (KBr): v 3394 (NH), 3038, 2929 (CH), 1593 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.42 (s, 3H, CH3), 7.15–8.26 (m, 10H, Ar-H), 8.68 (CH=N), 11.88 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 16.1 (CH3), 112.1, 116.6, 117.1, 120.1, 120.8, 122.6, 123.6, 125.6, 129.3, 131.4, 137.7, 158.3 (Ar-C and C=N) ppm; MS, m/z (%) 261 (M+, 19). Anal. Calcd. for C17H15N3 (261.33): C, 78.13; H, 5.79; N, 16.08. Found C, 78.01; H, 5.62; N, 16.00%.
3-((E)-1-(((E)-4-Methoxybenzylidene)hydrazineylidene)ethyl)-1H-indole (3b)
Yellow solid (80%); m.p. 283–285 °C (DMF); IR (KBr): v 3394 (NH), 3044, 2925 (CH), 1588 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.55 (s, 3H, CH3), 3.79 (s, 3H, OCH3), 7.00–8.59 (m, 9H, Ar-H), 8.67 (CH=N), 11.63 (s, 1H, NH) ppm; MS, m/z (%) 291 (M+, 17). Anal. Calcd. for C18H17N3O (291.35): C, 74.20; H, 5.88; N, 14.42. Found C, 74.06; H, 5.69; N, 14.31%.
3-((E)-1-(((E)-4-Chlorobenzylidene)hydrazineylidene)ethyl)-1H-indole (3c)
Yellow solid (87%); m.p. 252–254 °C (DMF); IR (KBr): v 3394 (NH), 3049, 2938 (CH), 1587 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.53 (s, 3H, CH3), 7.14–8.47 (m, 9H, Ar-H), 8.64 (CH=N), 11.46 (s, 1H, NH) ppm; MS, m/z (%) 297 (M++2, 9), 295 (M+, 30). Anal. Calcd. for C17H14ClN3 (295.77): C, 69.04; H, 4.77; N, 14.21. Found C, 68.91; H, 4.54; N, 14.07%.
3-((E)-1-(((E)-4-Bromobenzylidene)hydrazineylidene)ethyl)-1H-indole (3d)
Yellow solid (89%); m.p. 259–261 °C (DMF); IR (KBr): v 3394 (NH), 3042, 2922 (CH), 1588 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.53 (s, 3H, CH3), 7.14–7.91 (m, 9H, Ar-H), 8.47 (CH=N), 11.47 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 15.9 (CH3), 112.1, 116.0, 120.8, 122.6, 123.2, 124.9, 128.2, 129.2, 129.3, 133.7, 133.8, 137.6, 146.2, 151.7 (Ar-C and C=N) ppm; MS, m/z (%) 342 (M++2, 19), 340 (M+, 21). Anal. Calcd. for C17H14BrN3 (340.22): C, 60.02; H, 4.15; N, 12.35. Found C, 59.88; H, 4.04; N, 12.18%.
3-((E)-1-(((E)-4-Nitrobenzylidene)hydrazineylidene)ethyl)-1H-indole (3e)
Brown solid (91%); m.p. 195–197 °C (EtOH); IR (KBr): v 3393 (NH), 3045, 2927 (CH), 1595 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.52 (s, 3H, CH3), 7.11–8.32 (m, 9H, Ar-H), 8.47 (CH=N), 11.46 (s, 1H, NH) ppm; MS, m/z (%) 306 (M+, 15). Anal. Calcd. for C17H14N4O2 (306.33): C, 66.66; H, 4.61; N, 18.29. Found C, 66.50; H, 4.48; N, 18.15%.
2-((E)-(((E)-1-(1H-Indol-3-yl)ethylidene)hydrazineylidene)methyl)phenol (3f)
Yellow solid (89%); m.p. 296–298 °C (DMF); IR (KBr): v 3394, 3247 (NH and OH), 3044, 2921 (CH), 1593 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.46 (s, 3H, CH3), 6.92–7.65 (m, 9H, Ar-H), 8.17 (CH=N), 8.96 (s, 1H, OH), 11.11 (s, 1H, NH) ppm; MS, m/z (%) 277 (M+, 17). Anal. Calcd. for C17H15N3O (277.33): C, 73.63; H, 5.45; N, 15.15. Found C, 73.52; H, 5.57; N, 15.03%.
4-((E)-(((E)-1-(1H-indol-3-yl)ethylidene)hydrazineylidene)methyl)phenol (3g)
White solid (92%); m.p. 299–301 °C (DMF); IR (KBr): v 3394, 3296 (NH and OH), 3043, 2927 (CH), 1588 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.54 (s, 3H, CH3), 6.83–8.46 (m, 9H, Ar-H), 8.53 (CH=N), 10.04 (s, 1H, OH), 11.48 (s, 1H, NH) ppm; MS, m/z (%) 277 (M+, 100). Anal. Calcd. for C17H15N3O (277.33): C, 73.63; H, 5.45; N, 15.15. Found C, 73.51; H, 5.37; N, 15.00%.
3-((E)-1-(((E)-2,4-Dichlorobenzylidene)hydrazineylidene)ethyl)-1H-indole (3h)
Yellow solid (86%); m.p. 253–255 °C (DMF); IR (KBr): v 3394 (NH), 3039, 2925 (CH), 1603 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.46 (s, 3H, CH3), 6.70–8.47 (m, 8H, Ar-H), 8.67 (CH=N), 11.69 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 15.9 (CH3), 113.3, 116.5, 117.9, 119.2, 124.9, 125.3, 125.8, 127.0, 129.7, 129.8, 133.1, 141.7, 142.0, 143.5, 154.0, 159.9 (Ar-C and C=N) ppm; MS, m/z (%) 330 (M+, 18). Anal. Calcd. for C17H13Cl2N3 (330.21): C, 61.84; H, 3.97; N, 12.73. Found C, 61.70; H, 3.99; N, 12.59%.
2-((E)-(((E)-1-(1H-Indol-3-yl)ethylidene)hydrazineylidene)methyl)-4-bromophenol (3i)
Yellow solid (81%); m.p. 275–277 °C (DMF); IR (KBr): v 3394, 3158 (NH and OH), 3046, 2929 (CH), 1590 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.46 (s, 3H, CH3), 6.91–8.48 (m, 8H, Ar-H), 8.90 (CH=N), 11.10 (s, 1H, OH), 11.47 (s, 1H, NH) ppm; MS, m/z (%) 358 (M++2, 24), 356 (M+, 27). Anal. Calcd. for C17H14BrN3O (356.22): C, 57.32; H, 3.96; N, 11.80. Found C, 57.13; H, 3.88; N, 11.69%.
2-(4-((E)-(((E)-1-(1H-indol-3-yl)ethylidene)hydrazineylidene)methyl)-3-methoxyphenoxy)-N-(4-bromophenyl)acetamide (3j)
Yellow solid (83%); m.p. 265–267 °C (DMF); IR (KBr): v 3392, 3269 (2NH), 3281, 2939 (CH), 1697 (C=O), 1589 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.52 (s, 3H, CH3), 3.84 (s, 3H, OCH3), 4.75 (s, 2H, CH2), 7.00–8.46 (m, 12H, Ar-H), 8.61 (CH=N), 10.26 (s, 1H, NH), 11.48 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 15.7 (CH3), 56.2 (OCH3), 66.2 (CH2), 103.0, 109.8, 114.0, 114.1, 115.8, 121.9, 122.3, 125.9, 126.1, 128.7, 129.9, 130.2, 132.1, 138.3, 142.8, 149.6, 149.8, 150.0, 158.2 (Ar-C and C=N), 167.1 (C=O) ppm; MS, m/z (%) 521 (M++2, 15), 519 (M+, 16). Anal. Calcd. for C26H23BrN4O3 (519.40): C, 60.12; H, 4.46; N, 10.79. Found C, 60.04; H, 4.31; N, 10.65%.
3-((E)-1-(((E)-1-Phenylethylidene)hydrazineylidene)ethyl)-1H-indole (5a)
Yellow solid (87%); m.p. 189–191 °C (DMF); IR (KBr): v 3394 (NH), 3030, 2926 (CH), 1588 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.23 (s, 3H, CH3), 2.54 (s, 3H, CH3), 7.13–8.48 (m, 10H, Ar-H), 11.49 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 14.1 (CH3), 15.7 (CH3), 112.2, 116.2, 117.1, 117.1, 118.7, 120.1, 121.5, 124.3, 131.4, 131.7, 133.7, 140.2, 142.3, 149.4 (Ar-C and C=N) ppm; MS, m/z (%) 275 (M+, 49). Anal. Calcd. for C18H17N3 (275.36): C, 78.52; H, 6.22; N, 15.26. Found C, 78.64; H, 6.14; N, 15.12%.
3-((E)-1-(((E)-1-(4-Bromophenyl)ethylidene)hydrazineylidene)ethyl)-1H-indole (5b)
Yellow solid (80%); m.p. 183–185 °C (DMF); IR (KBr): v 3413 (NH), 3053, 2920 (CH), 1590 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.22 (s, 3H, CH3), 2.53 (s, 3H, CH3), 7.11–7.92 (m, 9H, Ar-H), 11.49 (s, 1H, NH) ppm; MS, m/z (%) 356 (M++2, 14), 354 (M+, 16). Anal. Calcd. for C18H16BrN3 (354.25): C, 61.03; H, 4.55; N, 11.86. Found C, 61.00; H, 4.43; N, 11.70%.
3-((E)-1-(((E)-1-(2-Thienyl)ethylidene)hydrazineylidene)ethyl)-1H-indole (7)
Yellow solid (88%); m.p. 284–286 °C (EtOH); IR (KBr): v 3214 (NH), 2920 (CH), 1600 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.42 (s, 3H, CH3), 2.54 (s, 3H, CH3), 7.12–8.48 (m, 8H, Ar-H), 11.39 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 15.4 (CH3), 16.1 (CH3), 112.1, 116.6, 120.8, 122.6, 123.6, 125.6, 126.4, 127.8, 128.4, 129.3, 130.4, 137.7, 158.3, 160.5 (Ar-C and C=N) ppm; MS, m/z (%) 281 (M+, 24). Anal. Calcd. for C16H15N3S (281.38): C, 68.30; H, 5.37; N, 14.90. Found C, 68.14; H, 5.25; N, 14.72% [68].
(1E,2E)-1,2-Bis(1-(1H-indol-3-yl)ethylidene)hydrazine (9)
Yellow solid (82%); m.p. 215–217 °C (EtOH); IR (KBr): v 3393 (NH), 3027, 2933 (CH), 1613 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.55 (s, 6H, 2CH3), 7.12–7.17 (m, 4H, Ar-H), 7.42–7.43 (d, 2H, Ar-H), 7.93 (s, 2H, Ar-H), 8.48–8.50 (d, 2H, Ar-H), 11.49 (s, 2H, 2NH) ppm; 13C-NMR (DMSO-d6): δ = 16.1 (CH3), 112.2, 116.6, 120.9, 122.7, 123.7, 125.70, 129.3, 137.8, 158.4 (Ar-C and C=N) ppm; MS, m/z (%) 314 (M+, 22). Anal. Calcd. for C20H18N4 (314.39): C, 76.41; H, 5.77; N, 17.82. Found C, 76.32; H, 5.53; N, 17.61%.
3-((E)-1-(((E)-1-(1H-Indol-3-yl)ethylidene)hydrazineylidene)ethyl)-2H-chromen-2-one (11)
Yellow solid (88%); m.p. 181–183 °C (EtOH); IR (KBr): v 3393 (NH), 3049, 2922 (CH), 1723 (C=O), 1588 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.46 (s, 3H, CH3), 2.53 (s, 3H, CH3), 7.10–8.48 (m, 10H, Ar-H), 11.48 (s, 1H, NH); 13C-NMR (DMSO-d6): δ = 13.1 (CH3), 16.0 (CH3), 112.2, 115.6, 120.5, 120.6, 120.9, 121.9, 122.7, 122.9, 123.2, 123.6, 125.3, 129.6, 134.8, 135.0, 137.7, 143.6, 144.5, 159.3 (Ar-C and C=N), 165.0 (C=O) ppm; MS, m/z (%) 343 (M+, 13). Anal. Calcd. for C21H17N3O2 (343.39): C, 73.45; H, 4.99; N, 12.24. Found C, 73.33; H, 4.91; N, 12.05%.
(E)-3-(((E)-1-(1H-Indol-3-yl)ethylidene)hydrazineylidene)indolin-2-one (13)
Orange solid (84%); m.p. 261–263 °C (DMF); IR (KBr): v 3394 (NH), 3028, 2930 (CH), 1692 (C=O), 1589 (C=N) cm−1; 1H-NMR (DMSO-d6) δ = 2.46 (s, 3H, CH3), 6.81–8.26 (m, 9H, Ar-H), 9.54 (s, 1H, NH), 10.64 (s, 1H, NH) ppm; 13C-NMR (DMSO-d6): δ = 15.9 (CH3), 112.1, 114.2, 115.9, 120.8, 122.6, 123.2, 123.9, 124.9, 128.2, 130.0, 134.0, 137.6, 141.9, 143.0, 146.2, 155.8 (Ar-C and C=N), 170.7 (C=O) ppm; MS, m/z (%) 302 (M+, 37). Anal. Calcd. for C18H14N4O (302.34): C, 71.51; H, 4.67; N, 18.53. Found C, 71.35; H, 4.50; N, 18.39%.

3.2. Cytotoxic Activity

The cytotoxicity of freshly synthesized azines was investigated against HCT-116, MCF-7, and HepG2 cells using the MTT test over a 24-h incubation period [69,70].
Mammalian cell line: HCT-116, MCF-7, and HepG2 cells were obtained from the VACSERA Tissue Culture Unit in Cairo, Egypt.

3.3. Docking Study

All information about the docking study is explained in the Supplementary Materials file [59,71,72,73,74].

4. Conclusions

The present study disclosed the green synthesis of 16 new benzaldazine and ketazine derivatives through the reaction of 3-(1-hydrazineylideneethyl)-1H-indole with various carbonyl compounds (aldehydes and ketones). Elemental and spectral analyses were used to confirm the structures of the produced derivatives. By using in vitro and in silico docking studies, all the synthesized derivatives were found to be efficient in inhibiting human colon cancer, human breast adenocarcinoma, and hepatocellular carcinoma cell lines. Molecular docking has proceeded for the 12 compounds 3a–h, 7, 9, 11, and 13 on CDK-5 enzyme in an attempt to show their manner of action as anticancer drugs. The complete analysis of the structure–activity connection, advancements, and pharmacological activity of substituted hydrazineylidene-1H-indole derivatives stated and elucidated in the article will aid researchers generating innovative, powerful, and safe anticancer candidates in the future.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/1420-3049/28/9/3869/s1, Figure S1: ligand interactions in 3D and 2D at the 3IG7 receptors’ binding site for derivatives 3a–h, 7, 9, 11 and 13; Table S1: Computed values for prediction parameters of derivative 9; Table S2: Computed values for prediction parameters of derivative 3d; Table S3: Computed values for prediction parameters of Doxorubicin; Section 3.2. Docking study; and some 1H-, 13C-NMR and Mass spectra of the synthesized compounds

Author Contributions

M.S.I., B.F., B.F., J.Y.A.-H., M.E.A.Z., M.F. and S.M.G.: Supervision, Investigation, Methodology, Resources, Formal analysis, Data curation, Funding acquisition, Writing-original draft, Writing review and editing. All authors have read and agreed to the published version of the manuscript.

Funding

Princess Nourah bint Abdulrahman University Researchers Supporting Project number (PNURSP2023R24), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented in this study are available on request.

Conflicts of Interest

The authors declare no conflict of interest.

Correction Statement

This article has been republished with a minor correction to the existing affiliation information. This change does not affect the scientific content of the article.

Sample Availability

Samples of the compounds 3a–j, 5a,b, 7, 9, 11 and 13 are available from the authors.

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Molecules 28 03869 sch001
Scheme 1. Synthesis of aldazines 3a–j and ketazines 5a,b.
Scheme 1. Synthesis of aldazines 3a–j and ketazines 5a,b.
Molecules 28 03869 sch001
Molecules 28 03869 sch002
Scheme 2. Synthesis of ketazines 7, 9, 11 and 13.
Scheme 2. Synthesis of ketazines 7, 9, 11 and 13.
Molecules 28 03869 sch002
Molecules 28 03869 g001
Figure 1. IC50 of the cytotoxic activity of the examined derivatives against human tumor cell lines.
Figure 1. IC50 of the cytotoxic activity of the examined derivatives against human tumor cell lines.
Molecules 28 03869 g001
Molecules 28 03869 g002
Figure 2. 2D Binding of EFP (a reference ligand) with CDK-5.
Figure 2. 2D Binding of EFP (a reference ligand) with CDK-5.
Molecules 28 03869 g002
Molecules 28 03869 g003aMolecules 28 03869 g003b
Figure 3. Ligand interactions in 3D and 2D at the 3IG7 receptors’ binding site for derivatives 3d, 9, and 13.
Figure 3. Ligand interactions in 3D and 2D at the 3IG7 receptors’ binding site for derivatives 3d, 9, and 13.
Molecules 28 03869 g003aMolecules 28 03869 g003b
Table 1. Comparison of the traditional heating and grinding method for synthesizing aldazines 3a–j.
Table 1. Comparison of the traditional heating and grinding method for synthesizing aldazines 3a–j.
Product No.ConventionalGrinding Technique
Time (h)Yield (%)Time (min)Yield (%)
3a4701790
3b3712091
3c3691988
3d4751987
3e5721888
3f4711789
3g5732091
3h4742292
3i3702189
3j3722091
Table 2. Cytotoxic activity of synthesized derivatives against human tumor cell lines.
Table 2. Cytotoxic activity of synthesized derivatives against human tumor cell lines.
DerivativesIn Vitro Cytotoxicity IC50 ± S. D (µM)
HCT-116HePG-2MCF-7
3a44.24 ± 2.3035.38 ± 2.3053.64 ± 1.84
3b52.28 ± 3.4745.29 ± 3.5769.28 ± 4.16
3c8.15 ± 2.008.41 ± 2.2613.36 ± 1.37
3d4.27 ± 2.414.83 ± 1.947.93 ± 1.30
3e19.07 ± 2.1519.78 ± 2.7217.02 ± 2.12
3f33.81 ± 3.8328.27 ± 2.3068.14 ± 3.16
3g29.29 ± 2.9323.17 ± 2.2857.45 ± 3.38
3h5.11 ± 1.755.03 ± 0.938.39 ± 2.19
729.38 ± 2.9331.71 ± 3.1950.34 ± 2.61
94.42 ± 0.964.09 ± 0.856.19 ± 2.37
1110.18 ± 2.379.05 ± 2.3913.27 ± 3.04
136.01 ± 1.394.87 ± 1.327.91 ± 2.37
Doxorubicin5.23 ± 0.294.50 ± 0.204.17 ± 0.20
Table 3. Docking score (kcal/mol), no. of H-bonding, and no. Of arene interaction formed between synthesized derivatives 3a–h, 7, 9, 11, and 13 with 3IG7 receptors when compared to native co-crystallized ligand EFP.
Table 3. Docking score (kcal/mol), no. of H-bonding, and no. Of arene interaction formed between synthesized derivatives 3a–h, 7, 9, 11, and 13 with 3IG7 receptors when compared to native co-crystallized ligand EFP.
Derivative No.Docking Score (kcal/mol)No. of Hydrogen BondingAffinity Bond Length (Å from Hydrogen Bond)No. of Arene Interaction
3a−7.49--1 (π-H) [Glu12]
3b−7.18---
3c−7.61--1 (π-H) [Glu12]
3d−7.821 (Asn132)2.931 (π-H) [Lys129]
1 (π-cation) [Lys129]
3e−7.441 (Glu81)2.931 (π-H) [Gly11]
3f−7.311 (Glu81)2.921 (π-H) [Gly11]
1 (Asp86)3.61
3g−7.361 (Gln131)2.91-
1 (Lys33)2.92
3h−7.751 (Glu81)2.85-
1 (Lys89)2.91
7−7.27--1 (π-H) [Val18]
1 (π-H) [Lys129]
9−8.341 (Gln131)3.041 (π-H) [Gly13]
1 (π-H) [Asn132]
11−7.53--1 (π-H) [Gln85]
13−8.061 (Glu81)3.03
3.04		2 (π -H) [Gly11]
1 (Lys89)
Doxorubicin−7.041 (Asn132)3.041 (π-H) [Gly11]
1 (π-cation) [Lys129]
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MDPI and ACS Style

Ibrahim, M.S.; Farag, B.; Al-Humaidi, J.Y.; Zaki, M.E.A.; Fathalla, M.; Gomha, S.M. Mechanochemical Synthesis and Molecular Docking Studies of New Azines Bearing Indole as Anticancer Agents. Molecules 2023, 28, 3869. https://doi.org/10.3390/molecules28093869

AMA Style

Ibrahim MS, Farag B, Al-Humaidi JY, Zaki MEA, Fathalla M, Gomha SM. Mechanochemical Synthesis and Molecular Docking Studies of New Azines Bearing Indole as Anticancer Agents. Molecules. 2023; 28(9):3869. https://doi.org/10.3390/molecules28093869

Chicago/Turabian Style

Ibrahim, Mohamed S., Basant Farag, Jehan Y. Al-Humaidi, Magdi E. A. Zaki, Maher Fathalla, and Sobhi M. Gomha. 2023. "Mechanochemical Synthesis and Molecular Docking Studies of New Azines Bearing Indole as Anticancer Agents" Molecules 28, no. 9: 3869. https://doi.org/10.3390/molecules28093869

APA Style

Ibrahim, M. S., Farag, B., Al-Humaidi, J. Y., Zaki, M. E. A., Fathalla, M., & Gomha, S. M. (2023). Mechanochemical Synthesis and Molecular Docking Studies of New Azines Bearing Indole as Anticancer Agents. Molecules, 28(9), 3869. https://doi.org/10.3390/molecules28093869

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