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Article

Conjugates of 3,5-Bis(arylidene)-4-piperidone and Sesquiterpene Lactones Have an Antitumor Effect via Resetting the Metabolic Phenotype of Cancer Cells

by
M. E. Neganova
1,2,†,
Yu. R. Aleksandrova
1,2,†,
E. V. Sharova
2,
E. V. Smirnova
2,
O. I. Artyushin
2,
N. S. Nikolaeva
1,
A. V. Semakov
1,
I. A. Schagina
1,
N. Akylbekov
3,
R. Kurmanbayev
3,
D. Orynbekov
3,* and
V. K. Brel
2,*
1
Institute of Physiologically Active Compounds at Federal Research Center of Problems of Chemical Physics and Medicinal Chemistry, Russian Academy of Sciences, 142432 Chernogolovka, Russia
2
Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 119991 Moscow, Russia
3
Laboratory of Engineering Profile “Physical and Chemical Methods of Analysis”, Korkyt Ata Kyzylorda University, Aiteke bi Str. 29A, 120014 Kyzylorda, Kazakhstan
*
Authors to whom correspondence should be addressed.
†
These authors contributed equally to this work.
Molecules 2024, 29(12), 2765; https://doi.org/10.3390/molecules29122765
Submission received: 10 May 2024 / Revised: 30 May 2024 / Accepted: 5 June 2024 / Published: 11 June 2024
(This article belongs to the Section Medicinal Chemistry)
Browse Figures
Versions Notes

Abstract

:
In recent years, researchers have often encountered the significance of the aberrant metabolism of tumor cells in the pathogenesis of malignant neoplasms. This phenomenon, known as the Warburg effect, provides a number of advantages in the survival of neoplastic cells, and its application is considered a potential strategy in the search for antitumor agents. With the aim of developing a promising platform for designing antitumor therapeutics, we synthesized a library of conjugates of 3,5-bis(arylidene)-4-piperidone and sesquiterpene lactones. To gain insight into the determinants of the biological activity of the prepared compounds, we showed that the conjugates of 3,5-bis(arylidene)-4-piperidone and sesquiterpene lactones, which are cytotoxic agents, demonstrate selective activity toward a number of tumor cell lines with glycolysis-inhibiting ability. Moreover, the results of molecular and in silico screening allowed us to identify these compounds as potential inhibitors of the pyruvate kinase M2 oncoprotein, which is the rate-determining enzyme of glycolysis. Thus, the results of our work indicate that the synthesized conjugates of 3,5-bis(arylidene)-4-piperidone and sesquiterpene lactones can be considered a promising platform for designing selective cytotoxic agents against the glycolysis process, which opens new possibilities for researchers involved in the search for antitumor therapeutics among compounds containing piperidone platforms.

1. Introduction

Cancer is the second leading cause of death worldwide and the leading cause of death in humans before the age of 85 years [1,2,3]. In spite of continuous efforts in biomedical chemistry and tangible accomplishments in cancer treatment, morbidity and mortality rates are still very high, mainly due to numerous side effects resulting from chemotherapeutic medication [4,5,6]. Therefore, the development of less toxic for healthy microenvironments and more efficient strategies for malignant neoplasm treatment is still a frontier of contemporary research programs in the search for promising antitumor agents.
One of the promising medicinal agents is curcumin, a highly active component of turmeric extract with an endless range of therapeutic properties, such as antioxidant, antitumor, antimicrobial, neuroprotective, and other types of activity [7,8,9]. However, the achievement of the therapeutic effect of curcumin is confined by a number of considerable drawbacks due to its low solubility in water, fast metabolic degradation, instability, and low bioavailability [10,11,12,13], which considerably limits its further pharmaceutical application and provides no possibility to convert this compound into a successful clinical drug. Therefore, significant attention has been paid to designing curcumin analogs by modifying their chemical structures to overcome the considerable drawbacks of curcumin and improve their pharmacological properties [14]. To date, a large number of studies have shed light on the high potential of bioactive piperidone molecules structurally related to curcumin as antitumor agents [15,16,17,18]. Piperidones are easily amenable to various chemical modifications, which makes this class of compounds promising as basic platforms for creating hybrid structures. A promising direction for creating such hybrids is the introduction of natural products into their composition [19,20,21].
Natural compounds have been the main sources of efficient drugs to design therapeutic strategies for the treatment of malignant neoplasms for many centuries. In particular, sesquiterpene lactones, which are a group of secondary metabolites obtained from the Asteráceae family [22], exhibit antitumor potential according to numerous reports [23,24,25]. Thus, a wide spectrum of biological activities has been convincingly demonstrated for costunolide [26,27,28], a sesquiterpene lactone isolated from the roots of Saussureacostus, dehydrocostuslactone [29,30] from the roots of Saussurealappa, alantolactone [31,32,33] from the roots of Inula helenium, and many others [34,35]. Owing to their participation in the modulation of different intracellular signaling pathways responsible for tumor growth and progression, these molecules can amplify the therapeutic potential and thus open new possibilities to improve chemotherapeutic treatment in the nearest future.
Thus, considering the factors mentioned above to search for compounds with higher antitumor activity and specificity toward tumor cells, we performed the purposeful synthesis of new curcumin analogs, including conjugates of 3,5-bisarylidene-4-piperidone and modified sesquiterpene lactones, namely isoalantolactone (1, Figure 1), alantolactone (2, Figure 1), and dehydrocostus lactone (3, Figure 1). We also studied the possible mechanisms of their action using in vitro and in silico molecular screening methods.
Thus, to date, the therapeutic potential of isoalantolactone has been convincingly demonstrated in the treatment of bladder [36] and endometrial cancer [37], colorectal carcinoma [38], liver cancer [39], breast cancer [40], etc. [41,42], due to its influence on a wide range of signaling pathways and pathological cascades that play a critical role in the progression of malignant neoplasms. Similarly well-known is the fact that alantolactone can exert an antitumor effect by targeting the pathways of apoptosis via Wnt/β-Catenin signaling [43], Nrf2 signaling pathway [44], and by regulating p38MAPK, NF-kB [45], and MAPK-JNK/c-Jun [46] pathways. The ability of dehydrocoslactone to suppress cancer progression by inhibiting migration [47], proliferation, epithelial–mesynchemic transition [48], sub-G1 cell cycle arrest, DNA damage, and loss of mitochondrial membrane potential [49] has been widely described.

2. Results and Discussion

2.1. Chemistry

To solve the task of designing hybrid molecular systems via the conjugation of 3,5-bis(arylidene)-4-piperidones and sesquiterpene lactones (1–3), we used the click-chemistry methodology proposed by Professor Sharpless, which is widely used for preparing biologically active conjugates [50,51] and was previously used by us to construct hybrid molecules [52,53,54]. This approach was used because it is simple and efficient, and it is based on the [2+3] cycloaddition reaction, leading to the formation of 1,2,3-triazole hydrophilic linker that combines 3,5-bis(arylidene)-4-piperidones and sesquiterpene lactones into a single molecular system and serves as an important pharmacophore involved in binding to the target [55]. To implement the click-chemistry methodology, one should first introduce terminal acetylene bonds and N3 groups into the molecules selected for conjugation. To introduce N3 groups into sesquiterpene lactones 1–3, we performed a nucleophilic addition reaction of 2-azidoethylamine at the terminal double bond located in the lactone ring. The reaction was performed in EtOH for 48 h. The yields of the azide blocks (4–6) were about 80% (Scheme 1).
To synthesize the acetylene fragment, we used 3,5-bis(benzylidene)-4-piperidones 7a–c, which were obtained by the previously described procedure [56] (Scheme 2). Using propargyl bromide as an alkylating agent in the presence of K2CO3 and using DMSO as a solvent, we performed the N-alkylation of 3,5-bis(benzylidene)-4-piperidones 7a–c. The yields of compounds 8a–c were 82–95%. Azide (4–6) and acetylene (8a–c) compounds were isolated in individual states using column chromatography and were characterized using spectral methods (NMR and IR, detail in Supplementary Materials).
The final stage of designing the molecular systems consisted of the conjugation of acetylene blocks 8a–c with azide blocks 4–6 using CuBr as a catalyst. We used similar conditions previously for designing biologically hybrid active compounds based on natural substrates [52,53,54]. Target hybrid compounds (9a–c–11a–c) were isolated in 57–65% yields using column chromatography and characterized by spectral methods (Scheme 3).

2.2. Biological Evaluation

2.2.1. Conjugates of Sesquiterpene Lactones and 3,5-Bis(arylidene)piperidin-4-ones Decrease Vitality of Tumor Cells

Initially, all studied compounds were tested for cytotoxicity against the human cells of tumor origin, including epithelial cells of breast adenocarcinoma MCF-7, neuroblastomes SH-SY5Y and IMR-32, human cervical adenocarcinoma HeLa, and conditionally normal culture of fibroblasts WI-38 obtained from fetal lung tissue.
The structural analogs considered as reference ligands were Arglabine, a sesquiterpene lactone isolated from Artemisia glabella and used in clinical practice as an antitumor and radiosensitizing agent [57], and curcumin, whose therapeutic potential as a modulator of carcinogenesis is widely described in the literature [58].
As shown in Table 1, the initial sesquiterpene lactones 1–3 and piperidones 7a–c exhibit moderate cytotoxic activity toward the cell lines used, which agrees well with the known literature data [59,60,61] and confirms the reliability of the obtained results.
In a study of the cytotoxic profile of conjugates 9a–11c containing the above piperidones and sesquiterpene lactones in their structure for a series of tumor cells, we revealed that these compounds retained high cytotoxicity toward cell lines obtained from different human solid malignancies, including two morphologically and biochemically different cell types of neuroblastomes SH-SY5Y and IMR-32, human cervical adenocarcinoma HeLa, and mammary duct adenocarcinoma MCF-7. So, the IC50 values of cytotoxic effect for the most toxic compound 11b containing fragments of 3 and 7b ranged from 6.07 ± 0.06 µM to 8.07 ± 0.02 µM, which is higher than the toxicity of the initial dehydrocostus lactone 3 (in IMR-32) and 3,5-bis(arylidene)piperidin-4-one 7b (in HeLa and IMR-32). It should be noted that the cytotoxicity of the synthesized compounds in most cases exceeded that of the reference ligands.
The results obtained for the normal cell line, WI-38, are of special interest. In contrast to the initial piperidones, the cytotoxicity of the synthesized conjugates toward WI-38 was considerably lower compared with that of the tumor cell lines. We calculated the selectivity indexes of each molecule, and Table 1 shows values equal to or greater than 3. Thus, the calculation of the selectivity index showed that it reached 7 for compound 11b, whereas the IC50 value of the cytotoxic effect in WI-38 for 7b—one of the pharmacophoric fragments of this conjugate—was in the submicromolar range. Selective action was reached because of the chemical modification of the initial piperidones by sesquiterpene lactones.
Thus, these results indicate the useful therapeutic window of the obtained conjugates and allow one to make intriguing assumptions regarding the design of agents specific to tumor cells. They also attract interest in further studying the mechanism of their action.

2.2.2. Conjugates of Sesquiterpene Lactones and 3,5-Bis(arylidene)piperidin-4-ones Behave as Negative Regulators of Aerobic Glycolysis in Cells of Human Cervical Carcinoma

The metabolic profile of tumor cells differs from that of normal cells due to intense aerobic glycolysis, known as the Warburg effect [62,63]. This modification of metabolic patterns causes invasive behavior in tumors, including proliferation, metastasis, immunosuppression, drug resistance, and recurrence [64,65]. Thus, Liu and coauthors revealed a direct correlation between the Warburg effect and the progression of triple-negative breast cancer [66]. Glycolysis is also the dominant energy metabolism in epithelial ovarian carcinoma [67], lung cancer [68,69], colorectal carcinoma [70,71], brain tumors [72], and others. To date, convincing data have been accumulated, proving that targeting this reprogrammed metabolism in neoplastic cells can have a wide spectrum of positive results for the treatment of malignant neoplasms. In particular, a recent study by Jin et al. showed that dihydroartemisinin, which is an inhibitor of the allosteric glycolytic enzyme pyruvate kinase M2, amplifies the antitumor effects of photodynamic therapy in esophageal cancer cells [73]. In spite of the fact that glycolysis inhibitors are not allowed in clinical practice till now, changes in the energetic metabolism of tumor cells are the subject of intense studies by many research teams, which enables one to consider it as a promising and efficient approach to cancer treatment.
In our study, to assess metabolic changes under the action of the prepared compounds at a concentration of 100 µM, we measured the acidification rate of the extracellular medium by human cervical adenocarcinoma HeLa cells using a glycolysis stress test. As shown in Table 2, the treatment of cells with the studied compounds considerably decreased the rate of extracellular acidification of the medium by cells, thereby reducing the glycolytic activity of tumor cells.
The most promising glycolysis inhibition profile was demonstrated for conjugate 11b, containing 7b and 3 fragments. Thus, compound 11b reliably decreased the extracellular acidification rate in terms of glycolysis (by 34.30%), glycolytic capacity (by 56.40%), and glycolytic reserve (91.79%), which indicates the ability of this compound to drastically disturb the glycolytic metabolism of tumor cells, thus initiating a series of fatal events in neoplastic cells.
It should be noted that the parameters of glycolytic function calculated for cells treated with sesquiterpene lactones 1–3 (Table 2) showed no considerable difference from those for control samples, whereas glycolytic capacity and glycolytic reserve considerably decreased under the action of the initial piperidones 7a–c.
Figure 2 provides representative images of the kinetic curves showing the change in the external cell acidification rate of the medium by HeLa cells, illustrating the actions of compounds 3 and 7b, as well as their conjugate 11b. Thus, based on the noted features, the obtained results allow us to suppose the key contribution of the piperidone platform to the emergence of glycolysis-inhibiting properties; however, modification with lactones seems to amplify this effect.

2.2.3. Determination of Allosteric Glycolytic Enzymes Binding Affinities of Compounds by Molecular Docking Analysis

To elucidate the molecular background of the glycolysis-inhibiting action of the studied compounds, we performed a molecular docking analysis for modeling the affinity of compounds binding to key enzymes of this process: hexokinase, phosphofructokinase, and pyruvate kinase M2.
The obtained docking scores for each compound in the binding sites of the rate-limiting enzymes of the glycolytic pathway are presented in Table 3. Thus, the study of molecular docking showed a larger binding affinity between the synthesized conjugates and pyruvate kinase M2, an enzyme that catalyzes the reaction in the final stage of the glycolytic pathway, transforming phosphoenolpyruvate into pyruvate. This is evidenced by the lowest values of binding affinity ranging from −8.4 to −9.9, thus indicating the formation of strong interactions with the target. It is interesting that the binding affinities of these potential inhibitors surpassed those of the positive control of phenylalanine.
It should also be noted that the initial piperidones showed the values of the estimated free energy of binding to hexokinase 2 and 6-phosphofructo-2-kinase similar to those of reference agents and, therefore, lower than for the synthesized conjugates (Table 3). This fact enables us to assume that the modification of the piperidone platform by sesquiterpene lactones hampers the entrance of the compounds into the binding sites of these enzymes.
In a detailed study of the mechanism of interaction of the studied compounds with PKM2, the docking of compounds showed that all synthesized conjugates exhibited good theoretical binding affinity to the target protein through the phosphoenolpyruvate (PEP)-binding site of this enzyme (Figure 3) via hydrogen bonding (Table 4) and hydrophobic (Table 5) and electrostatic (Table 6) interactions.
Table 4, Table 5 and Table 6 display the details of the interaction between the compounds and amino acid residues of the PEP-binding site of PKM2. Thus, it was revealed that all studied compounds produced hydrogen bonds of the conventional type (Table 4), mainly with the amino acids Arg73 and Lys270. It is of interest that, except for the initial lactones, both piperidones and their conjugates produce additional hydrogen bonds of the carbon type, while the structural features of 11a, 11b, and 11c enable these compounds to interact with amino acids Asn75 and Asp296 via π-donor hydrogen bonds and salt bridges, thus improving the inhibition profile of the compound.
Table 4. Assessment of hydrogen bonding of the studied compounds in the PEP-binding site of PKM2.
Table 4. Assessment of hydrogen bonding of the studied compounds in the PEP-binding site of PKM2.
Hydrogen Bond
ConventionalCarbonPi-Donor Hydrogen BondSalt Bridge
Res.Dis.Res.Dis.Res.Dis.Res.Dis.
1ARG732.43
2LYS2702.92
3ARG732.89
2.27
LYS2702.79
2.80
7aARG732.43HIS842.83
SER3622.31
7bARG73
GLN329		2.53
2.36		SER3622.34
THR3283.75
ILE513.50
7cARG732.53SER3622.57
ASN753.57
9aARG732.48SER3622.83
ARG1203.02
GLN3292.08
9bARG732.45SER3622.72
ALA2933.76
2.04ASN753.26
HIS783.44
9cARG732.83ASN753.46
LYS2702.41GLU1183.76
2.57ASP2963.62
10aARG1202.98GLY792.38
10bARG2942.82LEU1802.89
2.98GLY2983.62
2.45GLN3293.16
ALA3032.21ASP1773.65
10cLYS2702.51GLY792.58
2.29HIS842.95
2.93HIS783.78
SER3622.76GLU1183.66
SER2433.55
11aARG732.32ASP2963.27ASN752.85
ASN752.442.95
11bARG732.72GLU1183.27 ASP2962.44
2.27
11cSER772.47GLY792.32ASN753.11
LYS2072.21HIS783.73
LYS2702.20GLU1183.62
SER2433.48
The analysis of hydrogen bonding of the synthesized compounds with the PEP-binding site of PKM2 revealed that both the initial piperidones and their conjugates mainly formed π-alkyl and alkyl types of bonds (Table 5); Pro53, Ala366, Ala293, and Lys367 are typical amino acids that produce this kind of interaction with the majority of the docked ligands. Furthermore, compounds 9a,b, 10a,b, and 11b showed amide-π stacked, π–π stacked, or π-sigma interactions with His78, Tyr83, Tyr175, and Gly298 amino acid residues, which amplified the PKM2-inhibiting action of these compounds.
Table 5. Assessment of the hydrophobic interactions of the studied compounds in the PEP-binding site of PKM2.
Table 5. Assessment of the hydrophobic interactions of the studied compounds in the PEP-binding site of PKM2.
Hydrophobic Interactions
Pi-Pi T-ShapedPi-Alkyl/AlkylAmide-Pi StackedPi-Pi StackedPi-Sigma
Res.Dis.Res.Dis.Res.Dis.Res.Dis.Res.Dis.
1No electrostatic interactions
2
3
7aHIS785.70TYR834.32
HIS844.65
ALA3664.73
7b TYR834.73
HIS845.31
PRO534.96
ALA364.71
LYS3675.37
ALA2934.47
PRO534.52
LYS3674.06
7cHIS785.80TYR834.42
PRO534.91
ALA3664.70
LYS3674.98
ALA2933.60
PRO534.29
9a TYR834.57HIS785.25
ALA3664.25
9b HIS784.45 HIS784.64
TYR834.75
PRO535.09
4.31
ALA3664.56
LYS3674.64
ALA2933.17
9c HIS784.96
LYS3675.33
PRO534.61
ALA2933.67
ALA3665.48
4.86
MET2914.98
10a ALA3664.23 HIS783.97
LYS3675.35TYR833.91
10b ALA3035.47 TYR1754.89GLY2982.79
4.91
ILE2995.16
LEU1804.13
ALA3434.26
PRO3024.67
10c ALA3664.62
LYS365.48
PRO535.31
4.54
3.79
LYS3673.87
11a HIS784.80
ALA3664.11
LEU1804.18
ILE2995.35
11b HIS784.94 HIS785.20ASP1783.88
TYR834.71
HIS844.58
ALA3664.64
11c HIS785.05
4.40
ALA3664.32
PRO535.34
ALA2934.43
LYS3674.86
The assessment of electrostatic interactions for the synthesized compounds with the PEP-binding site of PKM2 showed the presence of the maximum number of bonds of this kind for compound 11b (Table 6), which contributed considerably to the most preferable bond energy equal to −9.9 kcal/mol. In addition to hydrogen bonding and hydrophobic interactions, 11b actively forms π-cation and attractive charge bonds, thus producing the most stable ligand–target complex in terms of orientation and conformation.
Table 6. Assessment of electrostatic interactions of the synthesized compounds in the PEP-binding site of PKM2.
Table 6. Assessment of electrostatic interactions of the synthesized compounds in the PEP-binding site of PKM2.
Electrostatic Interactions
Pi-AnionPi-CationAttractive Charge
Res.Dis.Res.Dis.Res.Dis.
1No electrostatic interactions
2
3
7a
7b
7c
9aGLU3324.04
9b ARG1204.27
9cASP2963.64
GLU332
10aNo electrostatic interactions
10bNo electrostatic interactions
10c LYS207 3.59
11aGLU1184.38ARG1203.20
11b ARG120 3.97GLU1185.34
GLU2724.13
11cASP2964.47
Two-dimensional representations of the favorable binding modes of conjugates 7b and 3–11b and their initial fragments are demonstrated in Figure 4. It is seen that 11b displays a much wider spectrum of docking interaction patterns against the PEP-binding site of PKM2, which causes a much lower binding affinity of enzyme −9.9 at docking scores of −6.1 and −7.9 for dehydrocostus lactone 3 and 3,5-bis(arylidene)piperidin-4-one 7b, respectively.
As a whole, the above results allow us to assume that modulation of glycolytic function by the studied derivatives may be caused by the presence of unique sites in their structures for binding to pyruvate kinase M2, which directly affects the activity of this enzyme and, therefore, the glycolysis process at large.
Thus, the obtained data on the selective interaction of the synthesized conjugates (but not the initial 3,5-bis(arylidene)piperidin-4-ones) with pyruvate kinase M2 led to the formulation of a hypothesis on the possible contribution of this phenomenon to the selectivity of the cytotoxic action of compounds, which was revealed in the study of their effect on the survival of cells of both tumor and normal origin. To date, it is well established that the second isoform of pyruvate kinase, which is a highly specific tumor protein, participates in the development of malignant neoplasms and, therefore, this enzyme refers to the class of metabolic oncomarkers [74]. It is of interest that there is no PKM2 in healthy adult organisms, but instead, three others are in operation (mainly PKM1). So, the blood serum samples of patients with primary prostate cancer exhibit a direct correlation between the increased expression of subtype 2 of pyruvate kinase and bone metastasis [75,76]. Analysis of tissues obtained from patients with stomach cancer and glioblastoma revealed an increase in the content of this enzyme associated with low survivability [77,78], which emphasizes the clinical significance of PKM2—an enzyme that supports the divergent biosynthetic and energetic needs of tumor cells—in the pathogenesis of different types of malignant neoplasms. Moreover, it was convincingly proven that the inhibition of PKM2 in the therapy of triple-negative breast cancer has no negative effect on normal tissues, which supports colossal interest in revealing the inhibitors of this enzyme [79]. Therefore, the decrease in cytotoxic activity of the synthesized derivatives toward normal cells can be caused by their structural features, allowing a direct influence on pyruvate kinase M2 without affecting other key enzymes of glycolysis universally expressed in normal tissues.

3. Materials and Methods

3.1. Reagents and Materials

All commercial reagents were used as purchased without further purification; all solvents used in the reactions were freshly distilled from appropriate drying agents before use. Analytical TLC was performed on Merck silica gel 60 F254 plates (Darmstadt, Germany), visualized under UV light (λmax = 254 nm) or by staining with iodine vapor. Column chromatography was carried out using Merck silica gel (Kieselgel 60, 0.063–0.200 mm, Darmstadt, Germany). The 1H, and 13C spectra were recorded on a Bruker Avance 400 spectrometer operating at 400.1 and 100.6, respectively. The chemical shifts (δ) are reported in ppm using residual (1H) or deuterated (13C) solvent signals as an internal standard rel. to TMS. The 13C NMR spectra were registered using the JMODECHO mode; the signals for the C-atom bearing odd and even numbers of H-atoms have opposite polarities. IR spectra were recorded in film or KBr pellets on a Fourier-spectrometer “Magna-IR750” (Nicolet, Glendale, WI, USA), with a resolution of 2 cm−1 and 128 scans. Analytical data (C, H, and N content) were obtained using a Carlo Erba model 1106 microanalyzer. High-resolution mass spectra (HRMS) were recorded on a Bruker micro TOF II instrument using electrospray ionization (ESI). The measurements were performed in a positive ion mode (interface capillary voltage: 4500 V); the mass ranged from m/z 50 to 3000; external or internal calibration was carried out using ESI Tuning Mix, Agilent (Waldbronn, Germany). A syringe injection was used for solutions in MeCN (flow rate 4 μL/min). N2 was applied as a dry gas; the interface temperature was set at 180 or 200 °C. HRMS were recorded at the Department of Structural Studies of Zelinsky Institute of Organic Chemistry, Moscow.
Isoalantolactone 1, alantolactone 2 [80], and dehydrocostus lactone 3 [81] were isolated from plant substrates according to previously reported procedures.

3.2. General Procedure for the Synthesis of Azides 4–6 [52]

To a solution of appropriate lactone (1 mmol, 1.0 eq) in EtOH (8 mL), 1-amino-2-azidoethane (2 mmol, 2.0 eq) was added. The mixture was stirred for 48 h at room temperature. After EtOH evaporation, the residue was dissolved in CH2Cl2 (10 mL). The solvent was removed in vacuo, affording azide 4 as a pale-yellow powder. In the case of azides 5, 6, the solvent was evaporated to afford azides (quant) as a viscous yellow oil, which were used for the next step without further purification.
Molecules 29 02765 i001
  • (3S,3aR,8aR,9aR)-3-(((2-azidoethyl)amino)methyl)-8a-methyl-5-methylenedecahydronaphtho[2,3-b]furan-2(3H)-one (4), Pale-yellow powder (83%), m.p. 101–102 °C. 1H NMR (400 MHz, CDCl3) δ 4.79 (1H, br.s, H-14a), 4.51 (1H, br.s, H-9), 4.47 (1H, br.s, H-14b), 3.43 (2H, t, J = 5.6 Hz, H2-17), 3.38 (1H, br.s, NH), 3.06 (1H, dd, J = 11.6 Hz, J = 6.8 Hz, H-15a), 2.95–2.75 (4H, m, H-15b, H2-16, H-8), 2.52 (1H, ddd, J = 12.7 Hz, J = 6.0 Hz, J = 2.0 Hz, H-11), 2.33 (1H, d, J = 12.4 Hz, H-2a), 2.18 (1H, d, J = 15.4 Hz, H-10a), 2.04–1.96 (1H, m, H-2b), 1.80 (1H, d, J = 12.1 Hz, H-6a), 1.70–1.45 (6H, m, H-1, H-4, H-7a, H-10b), 1.28–1.22 (2H, m, H-6b, H-7b), and 0.82 (3H, s, H3-13). 13C NMR (100 MHz, CDCl3) δ 177.85 (C-12), 149.13 (C-3), 106.33 (C-14), 78.20 (C-9), 51.06 (C-17), 48.63 (C-15), 47.42 (C-11), 46.33 (C-4), 44.92 (C-16), 42.07 (C-6), 41.23 (C-10), 38.90 (C-4), 36.59 (C-2), 34.65 (C-5), 22.52 (C-7), 20.91 (C-1), and 17.66 (C-13). IR (KBr) vmax 2932, 2866, 2096 (N3), 1747 (C=O), 1643, 1447, 1297, 1158, 963, and 894 cm−1. HRMS (ESI): m/z calcd. for C17H27N4O2 [M + H]+ 319.2129, found 319.2135. Anal. Calc. for C17H26N4O2 × 0.1 CH2Cl2: C, 62.83; H, 8.08; N, 17.14%. Found: C, 62.85; H, 8.02; N, 17.20%.
Molecules 29 02765 i002
  • (3S,3aR,5S,8aR,9aR)-3-(((2-Azidoethyl)amino)methyl)-5,8a-dimethyl-3,3a,6,7,8,8a,9,9aoctahydronaphtho[2,3-b]furan-2(5H)-one (5), Yellow oil (85%). 1H NMR (400 MHz, CDCl3) δ 5.15 (1H, d, J = 2.8 Hz, H-7), 4.76 (1H, m, H-9), 3.44 (2H, d, J = 5.6 Hz, H2-17), 3.16–3.13 (1H, m, H-8), 3.02–2.78 (5H, m, H-11, H2-15, H2-16), 2.50–2.47 (1H, m, H-3), 2.11 (1H, dd, J = 14.6 Hz, J = 3.1 Hz, H-10a), 1.87–1.76 (1H, m, H-2a), 1.61–1.42 (6H, m, H-1, H-2b, H-6, H-10b), 1.23 (3H, s, H3-13), and 1.12 (3H, d, J = 7.6 Hz, H3-14). 13C NMR (100 MHz, CDCl3) δ 177.12 (C-12), 150.10 (C-4), 114.58 (C-7), 76.69 (C-9), 50.44 (C-17), 47.93 (C-15), 45.54 (C-16), 45.02 (C-11), 42.04 (C-10), 41.50 (C-6), 37.77 (C-3), 36.92 (C-8), 32.31 (C-5), 32.15 (C-2), 27.99 (C-13), 22.32 (C-14), and 16.18 (C-1). IR (KBr) νmax 2929, 2101, 1762, 1457, 1340, 1180, 1151, 1039, and 733 cm−1. Anal. Calc. for C17H26N4O2·0.15 CH2Cl2: C, 62.20; H, 8.00; N, 16.92%. Found: C, 62.68; H, 8.03; N, 16.80%.
Molecules 29 02765 i003
  • (3R,3aS,9bS)-3-(((2-Azidoethyl)amino)methyl)-6,9-dimethylenedecahydroazuleno[4,5-b]furan-2(9bH)-one (6), Yellow oil (82%). 1H NMR (400 MHz, CDCl3) δ 5.30 (1H, s, H-13a), 5.17 (1H, s, H-13b), 4.87 (1H, s, H-14a), 4.76 (1H, s, H-14b), 3.96 (1H, t, J = 9.1 Hz, H-2), 3.37 (2H, t, J = 5.6 Hz, H2-17), 2.97 (1H, dd, J = 12.1 Hz, J = 3.8 Hz, H-15a), 2.89–2.81 (4H, m, H-1, H-7, H-12, H-15b), 2.51–2.45 (3H, m, H-5a, H-9), 2.39–2.34 (2H, m, H2-16), 2.15–1.85 (5H, m, H-3, H-4a, H-5b, H-8), and 1.39–1.24 (1H, m, H-4b). 13C NMR (100 MHz, CDCl3) δ 177.51 (C-11), 151.56 (C-10), 149.65 (C-6), 111.64 (C-13), 108.85 (C-14), 85.62 (C-2), 51.64 (C-12), 50.96 (C-17), 48.82 (C-15), 47.30 (C-1), 47.11 (C-16), 46.74 (C-7), 44.57 (C-3), 37.46 (C-9), 32.40 (C-5), 32.33 (C-4), and 29.95 (C-8). IR (KBr) νmax 2929, 2100, 1767, 1456, 1340, 1176, 1004, and 894 cm−1. Anal. Calc. for C17H24N4O2·0.1 CH2Cl2: C, 63.22; H, 7.51; N, 17.24%. Found: C, 63.15; H, 7.42; N, 17.09%.

3.3. General Procedure for the Synthesis of 3,5-Bis(arylidene)piperidin-4-ones (7a–c)

Piperidin-4-one hydrochloride (3.7 mmol, 1.0 eq) and appropriate aryl aldehyde (7.4 mmol, 2 eq) were mixed in glacial acetic acid (10 mL). Dry hydrogen chloride gas bubbled through the solution for 20 min. The reaction mixture was stirred for 2 h and was allowed to stay at room temperature overnight. After that, the acetic acid was evaporated, and the residue was treated with a saturated solution of sodium bicarbonate (7 g) in water (20 mL). The precipitate obtained was filtered off, washed with water (3 × 20 mL), and dried under vacuum. The resulting compounds 7a–c were used for further interactions without additional purification.
Spectral data and melting points of the known compounds 7a [82] and 7b [83] fit well the literature data.
Molecules 29 02765 i004
  • (3E,5E)-3,5-Bis((4,7-dimethoxybenzo[d][1,3]dioxol-5-yl)methylene)piperidin-4-one (7c), Yellow-green crystals (95%), m.p. 163–164 °C. 1H NMR (400 MHz, DMSO-d6) δ 7.68 (2H, s, H-7, H-7′), 6.52 (2H, s, H-13, H-13′), 6.09 (4H, s, H-15, H-15′), 3.92 (4H, s, H-2, H-6), and 3.88 and 3.83 (12H, both s, H3-14, H3-14′, H3-16, H3-16′). 13C NMR (100 MHz, DMSO-d6) δ 187.77 (C-4), 138.89 (C-11, C-11′), 138.81 (C-10, C-10′), 138.32 (C-12, C-12′), 137.71 (C-9, C-9′), 135.48 (C-7, C-7′), 129.18 (C-3, C-5), 121.25 (C-8, C-8′), 109.87 (C-13, C-13′), 102.58 (C-15, C-15′), 60.64 (C-14, C-14′), 57.07 (C-16, C-16′), and 48.08 (C-2, C-6). IR (KBr) vmax 2945, 2840, 1631, 1589, 1492, 1456, 1358, 1237, 1141, 1068, 958, and 521 cm−1. HRMS (ESI): m/z calcd. for C25H26NO9 [M + H]+ 484.1602, found 484.1614. Anal. Calc. for C25H25NO9 × 0.35 H2O: C, 61.31; H, 5.29; N, 2.86%. Found: C, 61.23; H, 5.48; N, 2.88%.

3.4. General Procedure for the Synthesis of N-Propargyl-3,5-bis(arylidene)piperidin-4-ones (8a–c)

To a stirred mixture of 3,5-bis(arylidene)piperidin-4-one (0.01 mol, 1.0 eq) and potassium carbonate (0.04 mol, 4.0 eq) in DMSO (15 mL), propargyl bromide (0.012 mol, 1.2 eq) was added. The solution obtained was stirred at room temperature for 5 min and then benzyl triethyl ammonium chloride (10 mg) was added. The resulting mixture was stirred for 2 h (TLC monitoring), and then water (100 mL) was added. The precipitate obtained was filtered off, washed on the filter with water, dried in air, and stored in vacuo over P2O5. Analytical grade samples 8a–c were obtained via column chromatography with SiO2 using gradient systems of CH2Cl2–MeOH solvents (50:0→50:1).
Molecules 29 02765 i005
  • (3E,5E)-3,5-Bis(benzo[d][1,3]dioxol-5-ylmethylene)-1-(prop-2-yn-1-yl)piperidin-4-one (8a), Yellow crystals (82%), m.p. > 192 °C (decomp.). 1H NMR (400 MHz, CDCl3) δ 7.76 (2H, s, H-7, H-7′), 6.97 (2H, d, J = 8.0 Hz, H-12, H-12′), 6.91 (2H, s, H-9, H-9′), 6.90 (2H, d, J = 8.0 Hz, H-13, H-13′), 6.05 (4H, s H-14, H-14′), 3.93 (4H, s, H-2, H-6), 3.58 (2H, d, J = 1.8 Hz, H2-15), and 2.41 (1H, t, J = 1.8 Hz, H-17). 13C NMR (100 MHz, CDCl3) δ 186.16 (C-4), 148.42 (C-11, C-11′), 147.83 (C-10, C-10′), 136.70 (C-7, C-7′), 130.93 (C-8, C-8′), 129.19 (C-3, C-5), 125.95 (C-13, C-13′), 109.92 (C-12, C-12′), 108.55 (C-9, C-9′), 101.41 (C-14, C-14′), 77.12 (C-16), 74.89 (C-17), 53.22 (C-2, C-6), and 46.33 (C-15). HRMS (ESI): m/z calcd. for C24H20NO5 [M + H]+ 402.1336, found 402.1346. Anal. Calc. for C24H19NO5× 0.5 H2O: C, 70.23; H, 4.91; N, 3.41%. Found: C, 70.06; H, 4.81; N, 3.55%.
Molecules 29 02765 i006
  • 3,5-Bis((E)-2,3-dimethoxybenzylidene)-1-(prop-2-yn-1-yl)piperidin-4-one (8b), Yellow crystals (87%), m.p. 60–61 °C. 1H NMR (400 MHz, CDCl3) δ 8.07 (2H, s, H-7, H-7′), 7.11 (2H, t, J = 8.0 Hz, H-12, H-12′), 6.97 (2H, d, J = 8.0 Hz, H-11, H-11′), 6.87 (2H, d, J = 8.0 Hz, H-13, H-13′), 3.90 (6H, s, H3-15, H3-15′), 3.83 (10H, br.s, H3-14, H3-14′, H-2, H-6), 3.47 (2H, d, J = 1.6 Hz, H2-16), and 2.31 (1H, t, J = 1.6 Hz, H-18). 13C NMR (100 MHz, CDCl3) δ 186.26 (C-4), 152.79 (C-9, C-9′), 148.39 (C-10, C-10′), 133.43 (C-8, C-8′), 132.58 (C-7, C-7′), 129.41 (C-3, C-5), 123.61 (C-13, C-13′), 121.85 (C-12, C-12′), 113.12 (C-11, C-11′), 77.41 (C-17), 74.43 (C-18), 61.27 (C-16, C-16′), 55.72 (C-15, C-15′), 53.41 (C-2, C-6), and 46.13 (C-16). HRMS (ESI): m/z calcd. for C26H28NO5 [M + H]+ 434.1962, found 434.1971. Anal. Calc. for C26H27NO5 × 1.5 H2O: C, 68.54; H, 6.68; N, 3.04%. Found: C, 68.59; H, 6.31; N, 3.10%.
Molecules 29 02765 i007
  • (3E,5E)-3,5-Bis((4,7-dimethoxybenzo[d][1,3]dioxol-5-yl)methylene)-1-(prop-2-yn-1-yl)piperidin-4-one (8c), Yellow crystals (95%), m.p. 167–168 °C. 1H NMR (400 MHz, CDCl3) δ 7.96 (2H, s, H-7, H-7′), 6.43 (2H, s, H-13, H-13′), 6.04 (4H, s, H-15, H-15′), 3.93 and 3.87 (12H, both s, H3-14, H3-14′, H3-16, H3-16′), 3.82 (4H, s, H-2, H-6), 3.49 (2H, d, J = 2.0 Hz, H2-17), and 2.31 (1H, t, J = 2.0 Hz, H-19). 13C NMR (100 MHz, CDCl3) δ 186.20 (C-4), 138.60 (C-11, C-11′), 138.57 (C-10, C-10′), 138.04 (C-12, C-12′), 137.89 (C-9, C-9′), 132.40 (C-3, C-5), 132.24 (C-7, C-7′), 121.44 (C-8, C-8′), 109.41 (C-13, C-13′), 101.92 (C-15, C-15′), 77.52 (C-18), 74.14 (C-19), 60.40 (C-14, C-14′), 56.92 (C-16, C-16′), 53.65 (C-2, C-6), and 46.25 (C-17). HRMS (ESI): m/z calcd. for C28H28NO9 [M + H]+ 522.1759, found 522.1765. Anal. Calc. for C28H27NO9 × 0.25 H2O: C, 63.93; H, 5.27; N, 2.66%. Found: C, 63.90; H, 5.29; N, 2.57%.

3.5. General Procedure for the “Click”-Reactions

To a stirred mixture of azide (0.2 mmol, 1.0 eq) and the corresponding alkyne (0.21 mmol, 1.05 eq.) in CH2Cl2 (5 mL), copper(I) bromide (0.01 mmol, 5 mol.%) and DIPEA (0.02 mmol, 10 mol.%) were added. The solution obtained was stirred at room temperature for 24 h (TLC monitoring). The solvent was removed in vacuo, and the remaining crude product was purified via column chromatography (dichloromethane/ethanol, 100:0.2 to 100:5) to afford the corresponding product as a viscous yellow oil.
Molecules 29 02765 i008
  • (3E,5E)-3,5-bis(benzo[d][1,3]dioxol-5-ylmethylene)-1-((1-(2-((((3S,3aR,8aR,9aR)-8a-methyl-5-methylene-2-oxododecahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (9a), Yellow oil (68%). 1H NMR (400 MHz, CDCl3) δ 7.63 (2H, s, H-26, H-26′), 7.52 (1H, s, H-18), 6.88 (2H, d, J = 8.0 Hz, H-32, H-32′), 6.82–6.77 (4H, m, H-28, H-28′, H-31, H-31′), 5.97 (4H, s, H2-33, H2-33′), 4.72 (1H, s, H-14a), 4.38–4.35 (4H, m, H-9, H-14b, H2-17), 3.86–3.82 (6H, m, H2-20, H2-21, H2-25), 3.10–3.06 (1H, m, H-8), 2.99–2.95 (2H, m, H2-16), 2.78–2.73 and 2.70–2.63 (2H, both m, H2-15), 2.41–2.35 (1H, m, H-11), 2.28–2.25 (1H, m, H-2a), 2.10 (1H, d, J = 15.4 Hz, H-10a), 1.96–1.92 (1H, m, H-2b), 1.71 (1H, d, J = 12.0 Hz, H-6a), 1.55–1.42 (5H, m, H-1, H-4, H-7a, H-10b), 1.22–1.05 (2H, m, H-6b, H-7b), and 0.74 (3H, s, H3-13). 13C NMR (100 MHz, CDCl3) δ 186.72 (C-23), 177.69 (C-12), 148.93 (C-3), 148.21 (C-30, C-30′), 147.66 (C-29, C-29′), 143.86 (C-19), 135.84 (C-26, C-26′), 131.35 (C-27, C-27′), 129.02 (C-22, C-24), 125.67 (C-32, C-32′), 123.14 (C-18), 109.77 (C-31, C-31′), 108.34 (C-28, C-28′), 106.22 (C-14), 101.27 (C-33, C-33′), 78.05 (C-9), 54.33 (C-21, C-25), 52.25 (C-20), 49.76 (C-17), 48.92 (C-15), 47.02 (C-11), 46.10 (C-4), 44.63 (C-16), 41.86 (C-6), 41.08 (C-10), 38.70 (C-8), 36.41 (C-2), 34.47 (C-5), 22.37 (C-7), 20.75 (C-1), and 17.51 (C-13). IR (film) vmax 2930, 1761 (C=O), 1596, 1504, 1489, 1446, 1263, 1235, 1039, 931, and 756 cm−1. HRMS (ESI): m/z calcd. for C41H46N5O7 [M + H]+: 720.3397, found 720.3395.
Molecules 29 02765 i009
  • (3E,5E)-3,5-bis(2,3-dimethoxybenzylidene)-1-((1-(2-((((3S,3aR,8aR,9aR)-8a-methyl-5-methylene-2-oxododecahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (9b), Yellow oil (62%). 1H NMR (400 MHz, CDCl3) δ 8.05 (2H, s, H-26, H-26′), 7.47 (1H, s, H-18), 7.08 (2H, t, J = 7.6 Hz, H-31, H-31′), 6.96 (2H, d, J = 8.0 Hz, H-30, H-30′), 6.81 (2H, d, J = 7.6 Hz, H-32, H-32′), 4.76 (1H, s, H-14a), 4.48–4.37 (4H, m, H-9, H-14b, H2-17), 3.90–3.82 (18H, m, H3-33, H3-33′, H3-34, H3-34′, H2-20, H2-21, H2-25), 3.10–3.05 (1H, m, H-8), 3.05–2.99 (2H, m, H2-16), 2.88–2.83 and 2.79–2.69 (2H, both m, H2-15), 2.50–2.40 (1H, m, H-2a), 2.33–2.30 (1H, m, H-11), 2.16 (1H, d, J = 15.6 Hz, H-10a), 2.00–1.95 (1H, m, H-2b), 1.75 (1H, d, J = 12.0 Hz, H-6a), 1.65–1.46 (5H, m, H-1, H-4, H-7a, H-10b), 1.30–1.15 (2H, m, H-6b, H-7b), and 0.80 (3H, s, H3-13). 13C NMR (100 MHz, CDCl3) δ 187.17 (C-23), 177.87 (C-12), 152.74 (C-3), 149.08 (C-28, C-28′), 148.24 (C-29, C-29′), 144.02 (C-19), 133.61 (C-22, C-24), 132.88 (C-26, C-26′), 129.44 (C-27, C-27′), 123.82 (C-30, C-30′), 123.30 (C-18), 122.01 (C-30, C-30′), 113.37 (C-32, C-32′), 106.49 (C-14), 78.47 (C-9), 61.28 (C-33, C-33′), 55.89 (C-34, C-34′), 54.37 (C-21, C-25), 51.61 (C-20), 49.60 (C-17), 49.09 (C-15), 46.38 (C-11), 46.24 (C-4), 44.91 (C-16), 42.17 (C-6), 41.35 (C-10), 38.98 (C-8), 36.70 (C-2), 34.47 (C-5), 22.67 (C-7), 21.06 (C-1), and 17.81 (C-13). IR (film) vmax 2934, 1762 (C=O), 1576, 1477, 1278, 1223, 1076, 1004, and 753 cm−1. HRMS (ESI): m/z calcd. for C43H54N5O7 [M + H]+: 752.4023, found 752.4015.
Molecules 29 02765 i010
  • (3E,5E)-3,5-bis((4,7-dimethoxybenzo[d][1,3]dioxol-5-yl)methylene)-1-((1-(2-((((3S,3aR,8aR,9aR)-8a-methyl-5-methylene-2-oxododecahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (9c), Yellow oil (64%). 1H NMR (400 MHz, CDCl3) δ 7.96 (2H, s, H-26, H-26′), 7.50 (1H, s, H-18), 6.38 (2H, s, H-32, H-32′), 6.03 (4H, s, H-34, H-34′), 4.76 (1H, s, H-14a), 4.48–4.38 (4H, m, H-9, H-14b, H2-17), 3.94 (6H, s, H3-33, H3-33′), 3.90 (6H, s, H3-35, H3-35′), 3.83 (2H, s H2-20), 3.80 (4H, s, H2-21, H2-25), 3.15-3.12 (1H, m, H-8), 3.02-3.00 (2H, m, H2-16), 2.84–2.82 and 2.75–2.70 (2H, both m, H2-15), 2.45–2.43 (1H, m, H-2a), 2.33–2.30 (1H, m, H-11), 2.15 (1H, d, J = 15.2 Hz, H-10a), 2.01–1.93 (1H, m, H-2b), 1.75 (1H, d, J = 12.0 Hz, H-6a), 1.60–1.45 (5H, m, H-1, H-4, H-7a, H-10b), 1.30–1.15 (2H, m, H-6b, H-7b), and 0.79 (3H, s, H3-13). 13C NMR (100 MHz, CDCl3) δ 186.65 (C-23), 177.86 (C-12), 149.08 (C-3), 143.79 (C-19), 138.62 (C-30, C-30′), 138.47 (C-29, C-29′), 138.05 (C-31, C-31′), 137.79 (C-28, C-28′), 132.15 (C-26, C-26′), 131.97 (C-22, C-24), 123.45 (C-18), 121.28 (C-27, C-27′), 109.29 (C-32, C-32′), 106.32 (C-14), 101.90 (C-34, C-34′), 78.26 (C-9), 60.33 (C-33, C-33′), 56.94 (C-35, C-35′), 54.41 (C-21, C-25), 51.65 (C-20), 49.75 (C-17), 49.01 (C-15), 47.06 (C-11), 46.24 (C-4), 44.80 (C-16), 42.02 (C-6), 41.21 (C-10), 38.86 (C-8), 36.55 (C-2), 34.61 (C-5), 22.51 (C-7), 20.91 (C-1), and 17.64 (C-13). IR (film) vmax 2931, 1762 (C=O), 1599, 1493, 1456, 1242, 1143, 1067, 963, and 755 cm−1. HRMS (ESI): m/z calcd. for C45H54N5O11 [M + H]+: 840.3820, found 840.3807.
Molecules 29 02765 i011
  • (3E,5E)-3,5-bis(benzo[d][1,3]dioxol-5-ylmethylene)-1-((1-(2-((((3S,3aR,5S,8aR,9aR)-5,8a-dimethyl-2-oxo-2,3,3a,5,6,7,8,8a,9,9a-decahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (10a), Yellow oil (62%). 1H NMR (400 MHz, CDCl3) δ 7.69 (2H, s, H-26, H-26′), 7.55 (1H, s, H-18), 6.93–6.85 (6H, m, H-28, H-28′, H-31, H-31′, H-32, H-32′), 6.01 (4H, s, H-33, H-33′), 5.05 (1H, br.s, H-7), 4.72 (1H, br.s, H-9), 4.43–4.39 (2H, m, H2-17), 3.91 (2H, s, H2-20), 3.87 (4H, s, H2-21, H2-25), 3.13–2.88 (5H, m, H2-16, H2-15, H-8), 2.76–2.70 (1H, m, H-11), 2.45–2.44 (1H, m, H-3), 2.09 (1H, dd, J = 14.8 Hz, J = 2.8 Hz, H-10a), 1.81–1.75 (1H, m, H-2a), 1.60–1.43 (6H, m, H-1, H-2b, H-6, H-10b), 1.21 (3H, s, H3-13), and 1.10 (3H, d, J = 7.4 Hz, H3-14). 13C NMR (100 MHz, CDCl3) δ 186.91 (C-23), 177.66 (C-12), 151.16 (C-4), 148.33 (C-30, C-30′), 147.78 (C-29, C-29′), 144.04 (C-19), 136.05 (C-26, C-26′), 131.43 (C-27, C-27′), 129.17 (C-22, C-24), 125.72 (C-32, C-32′), 123.25 (C-18), 114.58 (C-7), 109.91 (C-31, C-31′), 108.47 (C-28, C-28′), 101.36 (C-33, C-33′), 77.29 (C-9), 54.48 (C-21, C-25), 52.40 (C-20), 49.85 (C-17), 48.98 (C-15), 46.04 (C-16), 45.43 (C-11), 42.48 (C-10), 42.00 (C-6), 38.30 (C-3), 37.46 (C-8), 32.86 (C-5), 32.64 (C-2), 28.49 (C-13), 22.80 (C-14), and 16.65 (C-1). IR (film) vmax 2927, 1758 (C=O), 1596, 1503, 1489, 1446, 1234, 1038, 929, and 734 cm−1. HRMS (ESI): m/z calcd. for C41H46N5O7 [M + H]+: 720.3397, found 720.3380.
Molecules 29 02765 i012
  • (3E,5E)-3,5-bis(2,3-dimethoxybenzylidene)-1-((1-(2-((((3S,3aR,5S,8aR,9aR)-5,8a-dimethyl-2-oxo-2,3,3a,5,6,7,8,8a,9,9a-decahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (10b), Yellow oil (59%). 1H NMR (400 MHz, CDCl3) δ 8.03 (2H, s, H-26, H-26′), 7.44 (1H, s, H-18), 7.06 (2H, t, J = 7.9 Hz, H-31, H-31′), 6.95 (2H, d, J = 7.9 Hz, H-30, H-30′), 6.80 (2H, d, J = 7.6 Hz, H-32, H-32′), 5.06 (1H, s, H-7), 4.73 (1H, s, H-9), 4.35–4.33 (2H, m, H2-17), 3.89–3.80 (18H, m, H3-33, H3-33′, H3-34, H3-34′, H2-20, H2-21, H2-25), 3.07 (2H, br.s, H2-16), 3.02–2.91 (3H, m, H2-15, H-8), 2.74 (1H, br.s, H-11), 2.48–2.43 (1H, m, H-3), 2.09 (1H, dd, J = 14.7 Hz, J = 2.9 Hz, H-10a), 1.86–1.76 (1H, m, H-2a), 1.60–1.48 (6H, m, H-1, H-2b, H-6, H-10b), 1.21 (3H, s, H3-13), and 1.10 (3H, d, J = 7.4 Hz, H3-14). 13C NMR (100 MHz, CDCl3) δ 187.06 (C-23), 177.66 (C-12), 152.70 (C-28, C-28′), 151.09 (C-4), 148.22 (C-29, C-29′), 144.09 (C-19), 133.67 (C-27, C-27′), 132.43 (C-26, C-26′), 129.33 (C-22, C-24), 123.70 (C-18), 123.62 (C-32, C-32′), 121.83 (C-31, C-31′), 114.63 (C-7), 113.13 (C-30, C-30′), 77.31 (C-9), 61.10 (C-33, C-33′), 55.69 (C-34, C-34′), 54.31 (C-21, C-25), 51.58 (C-20), 49.70 (C-17), 49.01 (C-15), 45.98 (C-16), 45.49 (C-11), 42.50 (C-10), 42.01 (C-6), 38.29 (C-3), 37.44 (C-8), 32.86 (C-5), 32.64 (C-2), 28.50 (C-13), 22.81 (C-14), and 16.65 (C-1). IR (film) vmax 2930, 1759 (C=O), 1576, 1477, 1263, 1224, 1076, 1006, and 753 cm−1. HRMS (ESI): m/z calcd. for C43H54N5O7 [M + H]+: 752.4023, found 752.4018.
Molecules 29 02765 i013
  • (3E,5E)-3,5-bis((4,7-dimethoxybenzo[d][1,3]dioxol-5-yl)methylene)-1-((1-(2-((((3S,3aR,5S,8aR,9aR)-5,8a-dimethyl-2-oxo-2,3,3a,5,6,7,8,8a,9,9a-decahydronaphtho[2,3-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (10c), Yellow oil (65%). 1H NMR (400 MHz, CDCl3) δ 7.93 (2H, s, H-26, H-26′), 7.50 (1H, s, H-18), 6.36 (2H, s, H-32, H-32′), 6.00 (4H, s, H-34, H-34′), 5.04 (1H, br.s, H-7), 4.72 (1H, br.s, H-9), 4.40–4.31 (2H, m, H2-17), 3.91–3.77 (18H, m, H3-33, H3-33′, H3-35, H3-35′, H2-20, H2-21, H2-25), 3.10–3.00 (3H, m, H2-16, H-8), 2.98–2.90 (2H, m, H2-15), 2.73–2.71 (1H, m, H-11), 2.43–2.41 (1H, m, H-3), 2.09–1.99 (1H, m, H-10a), 1.84–1.75 (1H, m, H-2a), 1.59–1.42 (6H, m, H-1, H-2b, H-6, H-10b), 1.19 (3H, s, H3-13), and 1.08 (3H, d, J = 7.4 Hz, H3-14). 13C NMR (100 MHz, CDCl3) δ 186.66 (C-23), 177.72 (C-12), 151.09 (C-4), 143.71 (C-19), 138.56 (C-30, C-30′), 138.42 (C-29, C-29′), 138.00 (C-28, C-28′), 132.05 (C-26, C-26′), 131.96 (C-22, C-24), 123.39 (C-18), 121.22 (C-27, C-27′), 114.58 (C-7), 109.24 (C-32, C-32′), 101.85 (C-34, C-34′), 101.36 (C-33, C-33′), 77.29 (C-9), 60.27 (C-33, C-33′), 56.87 (C-35, C-35′), 54.39 (C-21, C-25), 51.66 (C-20), 49.79 (C-17), 48.93 (C-15), 45.98 (C-16), 45.39 (C-11), 42.44 (C-10), 41.96 (C-6), 38.26 (C-3), 37.42 (C-8), 32.81 (C-5), 32.60 (C-2), 28.44 (C-13), 18.19 (C-14), and 16.61 (C-1). IR (film) vmax 2931, 1760 (C=O), 1600, 1495, 1456, 1245, 1143, 1067, and 736 cm−1. HRMS (ESI): m/z calcd. for C45H54N5O11 [M + H]+: 840.3820, found 840.3822.
Molecules 29 02765 i014
  • (3E,5E)-3,5-bis(benzo[d][1,3]dioxol-5-ylmethylene)-1-((1-(2-((((3R,3aS)-6,9-dimethylene-2-oxododecahydroazuleno[4,5-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (11a), Yellow oil (62%). 1H NMR (400 MHz, CDCl3) δ 7.72 (2H, s, H-26, H-26′), 7.57 (1H, s, H-18), 6.95–6.87 (6H, m, H-28, H-28′, H-31, H-31′, H-32, H-32′), 6.03 (4H, s, H-33, H-33′), 5.15 (1H, s, H-13a), 5.04 (1H, s, H-13b), 4.87 (1H, s, H-14a), 4.77 (1H, s, H-14b), 4.44–4.42 (2H, m, H2-17), 3.96–3.90 (7H, m, H-2, H2-20, H2-21, H2-25), 3.12–3.11 (2H, m, H2-16), 2.90–2.78 (4H, m, H2-15, H-12, H-7), 2.51–2.43 (3H, m, H-1, H-9), 2.37–2.35 (1H, m, H-5a,), 2.23–2.15 (1H, m, H-4a), 2.04–1.83 (4H, m, H-3, H-5b, H-8), and 1.34–1.24 (1H, m, H-4b). 13C NMR (100 MHz, CDCl3) δ 186.96 (C-23), 177.44 (C-11), 151.51 (C-10), 149.54 (C-6), 148.41 (C-30, C-30′), 147.83 (C-29, C-29′), 143.87 (C-19), 136.43 (C-26, C-26′), 131.10 (C-27, C-27′), 129.15 (C-22, C-24), 125.87 (C-32, C-32′), 123.47 (C-18), 111.88 (C-13), 109.97 (C-31, C-31′), 109.06 (C-14), 108.54 (C-28, C-28′), 101.49 (C-33, C-33′), 85.73 (C-2), 54.37 (C-21, C-25), 52.24 (C-20), 51.67 (C-12), 49.60 (C-17), 48.96 (C-15), 46.97 (C-1), 46.86 (C-7), 46.80 (C-3), 44.82 (C-16), 37.39 (C-9), 32.39 (C-5), 32.34 (C-4), and 30.03 (C-8). IR (film) vmax 2934, 1762 (C=O), 1576, 1477, 1263, 1223, 1076, 1004, and 753 cm−1. HRMS (ESI): m/z calcd. for C41H44N5O7 [M + H]+: 718.3240, found 718.3227.
Molecules 29 02765 i015
  • (3E,5E)-3,5-bis(2,3-dimethoxybenzylidene)-1-((1-(2-((((3R,3aS)-6,9-dimethylene-2-oxododecahydroazuleno[4,5-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (11b), Yellow oil (59%). 1H NMR (400 MHz, CDCl3) δ 8.06 (2H, s, H-26, H-26′), 7.46 (1H, s, H-18), 7.09–7.07 (2H, m, H-31, H-31′), 6.96 (2H, d, J = 7.6 Hz, H-30, H-30′), 6.82–6.81 (2H, m, H-32, H-32′), 5.17 (1H, s, H-13a), 5.05 (1H, s, H-13b), 4.87 (1H, s, H-14a), 4.77 (1H, s, H-14b), 4.34 (2H, br.s, H2-17), 3.91–3.85 (19H, m, H3-33, H3-33′, H3-34, H3-34′, H-2, H2-20, H2-21, H2-25), 3.03 (2H, br.s, H2-16), 2.87–2.77 (4H, m, H2-15, H-12, H-7), 2.52–2.44 (3H, m, H-1, H-9), 2.35 (1H, br.s, H-5a), 2.19 (1H, br.s, H-4a), 2.02–1.86 (4H, m, H-3, H-5b, H-8), and 1.29–1.27 (1H, m, H-4b). 13C NMR (100 MHz, CDCl3) δ 187.17 (C-23), 177.66 (C-11), 152.83 (C-28, C-28′), 151.76 (C-10), 149.76 (C-6), 148.35 (C-29, C-29′), 144.15 (C-19), 133.78 (C-27, C-27′), 132.59 (C-26, C-26′), 129.45 (C-22, C-24), 123.81 (C-32, C-32′), 123.33 (C-18), 121.99 (C-31, C-31′), 113.28 (C-30, C-30′), 111.87 (C-13), 109.05 (C-14), 85.77 (C-2), 61.27 (C-33, C-33′), 55.84 (C-34, C-34′), 54.45 (C-21, C-25), 51.81 (C-12), 51.67 (C-20), 49.93 (C-17), 49.17 (C-15), 47.39 (C-1), 46.94 (C-7), 46.81 (C-16), 44.85 (C-3), 37.55 (C-9), 32.54 (C-5), 32.50 (C-4), and 30.14 (C-8). IR (film) vmax 2933, 1764 (C=O), 1575, 1476, 1455, 1263, 1224, 1075, 1004, and 753 cm−1. HRMS (ESI): m/z calcd. for C43H52N5O7 [M + H]+: 750.3866, found 750.3855.
Molecules 29 02765 i016
  • (3E,5E)-3,5-bis((4,7-dimethoxybenzo[d][1,3]dioxol-5-yl)methylene)-1-((1-(2-((((3R,3aS)-6,9-dimethylene-2-oxododecahydroazuleno[4,5-b]furan-3-yl)methyl)amino)ethyl)-1H-1,2,3-triazol-4-yl)methyl)piperidin-4-one (11c), Yellow oil (57%). 1H NMR (400 MHz, CDCl3) δ 7.92 (2H, s, H-26, H-26′), 7.46 (1H, s, H-18), 6.35 (2H, s, H-32, H-32′), 5.99 (4H, s, H-34, H-34′), 5.12 (1H, s, H-13a), 4.99 (1H, s, H-13b), 4.83 (1H, s, H-14a), 4.73 (1H, s, H-14b), 4.32 (2H, br.s, H2-17), 3.90–3.77 (19H, m, H-33, H-33′, H-35, H-35′, H-2, H2-20, H2-21, H2-25), 2.99–2.82 (6H, m, H2-16, H2-15, H-12, H-7), 2.48–2.40 (3H, m, H-1, H-9), 2.27–1.80 (6H, m, H-5a, H-4a, H-3, H-5b, H-8), and 1.27–1.22 (1H, m, H-4b). 13C NMR (100 MHz, CDCl3) δ 186.56 (C-23), 177.42 (C-11), 151.51 (C-10), 149.54 (C-6), 143.67 (C-19), 138.49 (C-30, C-30′), 138.35 (C-29, C-29′), 137.91 (C-31, C-31′), 137.69 (C-28, C-28′), 131.96 (C-22, C-24), 131.90 (C-26, C-26′), 123.26 (C-18), 121.18 (C-27, C-27′), 111.63 (C-13), 109.14 (C-32, C-32′), 108.88 (C-14), 101.82 (C-34, C-34′), 85.52 (C-2), 60.25 (C-33, C-33′), 56.80 (C-35, C-35′), 54.34 (C-21, C-25), 51.60 (C-20), 51.56 (C-12), 49.78 (C-17), 49.00 (C-15), 47.15 (C-1), 47.01(C-16), 46.71 (C-7), 44.63 (C-3), 37.33 (C-9), 32.29 (C-5), 32.24 (C-4), and 29.90 (C-8). IR (film) vmax 2937, 1763 (C=O), 1599, 1495, 1456, 1193, 1066, and 755 cm−1. HRMS (ESI): m/z calcd. for C45H52N5O11 [M + H]+: 838.3663, found 838.3661.

3.6. Cell Culture

Cells of tumor origin—epithelial cells of breast adenocarcinoma MCF-7, neuroblastomes SH-SY5Y and IMR-32, human cervical adenocarcinoma HeLa, and conditionally normal fibroblast culture WI-38 obtained from fetal lung tissue—were cultivated in a wet chamber using DMEM supplemented with 10% fetal calf serum and penicillin as an antibiotic at 37 °C and 5% CO2. After 75% of confluence was reached, the cells were trypsinized using a physiological buffer salt solution containing 0.25% trypsin. Next, the cells were transferred to 96-well culture plates at a density of 10,000/well and incubated for 24 h to attach to the plate surface.

3.7. Assessment of Cells Vitality

Cell vitality was assessed by the MTT test. The cells were treated with solutions of the studied compounds at different concentrations (ranging from 0.1 to 100 µM) for 24 h. After incubation, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) was added to all wells in an amount equal to 10% of the nutrition medium volume and incubated for 2 h at 37 °C. Next, the nutrition medium was carefully abstracted, and the resultant formazane crystals indicating cell vitality were dissolved by the addition of dimethyl sulfoxide. Finally, the optical density was measured using a CytationTM3 plate analyzer (BioTek Instruments Inc., Winooski, VT, USA) at a wavelength of 555 nm.

3.8. Measuring Glycolytic Function in Cells

Glycolytic function in HeLa cells of tumor origin (human cervical adenocarcinoma) was assessed by glycolysis stress test using a Seahorse XFe96 (Agilent Technologies, Santa Clara, CA, USA) cell metabolism analyzer according to the protocol of Agilent Technologies (Santa Clara, CA, USA).
Briefly, HeLa cells that amounted to 30,000/well were seeded in a 96-well plate and cultured in Dulbecco’s Modified Eagle’s Medium supplemented with 10% fetal calf serum and penicillin at 37 °C in a humidified atmosphere with 5% CO2 for 24 h. After incubation, the cells were washed twice with Agilent Seahorse XF assay media containing DMEM and incubated for 1 h at 37 °C. Next, the plate with cells was placed in the cell metabolism analyzer and the external cell acidification rate of medium (ECAR) was measured during prescribed time intervals at the initial level and after automatic sequential injections of the following studied compounds/solvent (port A): 10 mM glucose (port B), 1 µM oligomycin (port C), and 25 mM 2-deoxyglucose (port D). The ECAR values for each group were a combination of three independent assays.

3.9. Molecular Docking

Structures of hexokinase 2,6-phosphofructo-2-kinase, and human pyruvate kinase M2 were obtained from a protein data bank (PDB) (www.rcsb.org (on 1 February 2024)), with PDB ID 2NZT [84,85], 1K6M [86], and 6V74 [87], respectively. The structure of target proteins was prepared for molecular docking procedure using the AutoDockVinapackage software (version 1.1.2, Molecular Graphics Laboratory, The Scripps Research Institute, LaJolla, CA, USA) and UCSF Chimera 1.17.3 (Resource for Biocomputing, Visualization, and Informatics from the University of California, San Francisco, CA, USA) by removing various ligands, non-key waters, and other non-key small molecules, as well as by adding H atoms and charge sand missing side chains.
The 3D structures of the ligand molecules were obtained by the ChemDrawUltra 12.0 software. Structure minimization for all ligands was performed using the UCSF Chimera software.
To validate the reference, molecules (2-Deoxy-glucose-6-phosphate for hexokinase 2 and L-phenylalanine for pyruvate kinase M2) were redocked in accordance with the parameters used in the specific experiment. The compounds were docked to the selected cavities of the enzymes with ten iterations for each specific docking. The docking procedure was considered to be successful when the obtained results had an RMSD parameter below 1.
Subsequent treatment and analysis of results and image production were performed using the Biovia Discovery Studio Viewer 2021 software (Biovia, SanDiego, CA, USA).

4. Conclusions

In conclusion, in this work, we have synthesized previously unknown hybrid molecular systems composed of 3,5-bis(arylidene)-4-piperidone and sesquiterpene lactones using click-chemistry methodology. We have shown that, as cytotoxic agents show selective action toward tumor cells, the conjugates of 3,5-bis(arylidene)piperidin-4-ones and sesquiterpene lactones display a modulating action on glucose metabolism, which is caused by their glycolysis-inhibiting ability. Using molecular in silico screening, the obtained compounds were identified as potential inhibitors of the allosteric glycolytic enzyme, pyruvate kinase M2 oncoprotein.
Our study is one of the first to demonstrate the mechanism of action of compounds based on the piperidone platform associated with the reprogramming of the metabolic state of tumor cells by the inhibition of PKM2. At the same time, this study expands the understanding of the antitumor potential of compounds with such a structure and provides the foundation for the further analysis of compounds containing piperidone fragments in their structure in terms of efficiency against the key enzymes of the glycolysis process.
Thus, the obtained results indicate that conjugates of 3,5-bis(arylidene)piperidin-4-ones and sesquiterpene lactones can be considered promising platforms for designing selective antitumor agents targeted against the glycolysis process.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules29122765/s1, 1H, 13C NMR and HRMS spectra for all novel compounds 4, 7c, 8a–c, 9a–c, 10a–c, 11a–c.

Author Contributions

Conceptualization, M.E.N. and V.K.B.; methodology, M.E.N., Y.R.A., N.S.N., I.A.S., O.I.A., E.V.S. (E. V. Sharova), and E.V.S. (E. V. Smirnova); data curation, V.K.B. and M.E.N.; software, Y.R.A. and A.V.S.; validation, V.K.B. and M.E.N.; formal analysis, O.I.A., N.A., and R.K.; funding acquisition, V.K.B. and D.O.; writing—original draft preparation, V.K.B. and M.E.N.; writing—review and editing, V.K.B. and M.E.N.; supervision, V.K.B. and M.E.N.; project administration, V.K.B. All authors have read and agreed to the published version of the manuscript.

Funding

The study of cytotoxic activity was funded by the Non-Profit Joint-Stock Company “Korkyt Ata Kyzylorda University” (Grant No. 06-09-23).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

All studied compounds can be found from the corresponding author V. K. Brel.

Acknowledgments

The authors would like to acknowledge the “Centre for Collective Use of IPAC RAS” (IPAC research topic FFSG-2024-0021) for providing the opportunity to conduct biological experiments. Synthesis of all compounds, elemental analysis, and recording of NMR spectra were supported by the Ministry of Science and Higher Education of the Russian Federation using the scientific equipment of the Center for molecular composition studies of INEOS RAS.

Conflicts of Interest

The authors declare no conflicts of interest.

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Molecules 29 02765 g001
Figure 1. Molecular structures of natural sesquiterpene lactones: isoalantolactone (1), alantolactone (2), and dehydrocostus lactone (3).
Figure 1. Molecular structures of natural sesquiterpene lactones: isoalantolactone (1), alantolactone (2), and dehydrocostus lactone (3).
Molecules 29 02765 g001
Molecules 29 02765 sch001
Scheme 1. By introducing an azide group into sesquiterpene lactones 1–3, compounds 4–6 were synthesized.
Scheme 1. By introducing an azide group into sesquiterpene lactones 1–3, compounds 4–6 were synthesized.
Molecules 29 02765 sch001
Molecules 29 02765 sch002
Scheme 2. Synthesis of N-propargyl-3,5-bis(arylidene)piperidin-4-ones (8a–c).
Scheme 2. Synthesis of N-propargyl-3,5-bis(arylidene)piperidin-4-ones (8a–c).
Molecules 29 02765 sch002
Molecules 29 02765 sch003
Scheme 3. Conjugation of azides 4–6 with N-propargyl-3,5-bis(arylidene)piperidin-4-ones (8a–c).
Scheme 3. Conjugation of azides 4–6 with N-propargyl-3,5-bis(arylidene)piperidin-4-ones (8a–c).
Molecules 29 02765 sch003
Molecules 29 02765 g002
Figure 2. External cell acidification rate of the medium (ECAR) by HeLa cells measured in glycolysis stress test using a Seahorse XF-96 cell metabolism analyzer. (a) Kinetic curves for changes in external cell acidification rate of the medium by HeLa cells after sequential injection of the studied compounds (100 µM), glucose (10 mM), oligomycin (1 µM), and 2-deoxyglucose (2-DG) (50 µM). (b) Glycolytic function parameters: glycolysis represents the difference between the highest ECAR value before oligomycin injection and the last ECAR measurement after injection of the studied compounds; glycolytic capacity is calculated as the largest ECAR value after oligomycin injection minus the last ECAR measurement after injection of the studied compounds; glycolytic reserve is the difference between glycolytic capacity and glycolysis. The data are presented as Mean ± SEM, n = 3. *, ***, and ****—p < 0.05, p < 0.001, and p < 0.0001, respectively, in comparison with control (by 1-way ANOVA with Dunnett’s test).
Figure 2. External cell acidification rate of the medium (ECAR) by HeLa cells measured in glycolysis stress test using a Seahorse XF-96 cell metabolism analyzer. (a) Kinetic curves for changes in external cell acidification rate of the medium by HeLa cells after sequential injection of the studied compounds (100 µM), glucose (10 mM), oligomycin (1 µM), and 2-deoxyglucose (2-DG) (50 µM). (b) Glycolytic function parameters: glycolysis represents the difference between the highest ECAR value before oligomycin injection and the last ECAR measurement after injection of the studied compounds; glycolytic capacity is calculated as the largest ECAR value after oligomycin injection minus the last ECAR measurement after injection of the studied compounds; glycolytic reserve is the difference between glycolytic capacity and glycolysis. The data are presented as Mean ± SEM, n = 3. *, ***, and ****—p < 0.05, p < 0.001, and p < 0.0001, respectively, in comparison with control (by 1-way ANOVA with Dunnett’s test).
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Molecules 29 02765 g003
Figure 3. Representative image of the PKM2 protein–ligand complexes based on the example of 7b, reflecting the binding site of the ligand in the crystal structure of the enzyme. The yellow sticks represent compound 7b. The blue sticks represent the PKM2 structure.
Figure 3. Representative image of the PKM2 protein–ligand complexes based on the example of 7b, reflecting the binding site of the ligand in the crystal structure of the enzyme. The yellow sticks represent compound 7b. The blue sticks represent the PKM2 structure.
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Figure 4. (A–C) Docking poses of 3, 7b, and 11b with target protein by pyruvate kinase M2 (PDB ID: 6V74). Nitrogen and oxygen atoms are marked blue and red, respectively.
Figure 4. (A–C) Docking poses of 3, 7b, and 11b with target protein by pyruvate kinase M2 (PDB ID: 6V74). Nitrogen and oxygen atoms are marked blue and red, respectively.
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Table 1. Cytotoxicity profiles of the prepared compounds.
Table 1. Cytotoxicity profiles of the prepared compounds.
IC50 of Cytotoxic Effect, µM
MCF-7SH-SY5YHeLaIMR-32WI-38
127.51 ± 0.2019.22 ± 0.113.41 ± 0.1226.83 ± 0.2774.03 ± 0.11
213.15 ± 0.1315.31 ± 0.0910.05 ± 0.0330.26 ± 1.1048.45 ± 0.14
310.56 ± 0.079.15 ± 0.117.24 ± 0.0622.00 ± 0.9838.55 ± 0.86
7a23.93 ± 0.084.75 ± 0.039.21 ± 0.0325.66 ± 0.635.26 ± 0.07
7b6.73 ± 0.054.83 ± 0.0243.99 ± 0.379.05 ± 0.092.63 ± 0.08
7c6.95 ± 0.025.55 ± 0.0528.09 ± 0.3524.14 ± 0.080.66 ± 0.05
9a8.90 ± 0.188.84 ± 0.0157.29 ± 1.698.73 ± 0.0239.47 ± 0.07
SI = 4SI = 4SI = 5
9b9.44 ± 0.138.30 ± 0.018.77 ± 0.026.72 ± 0.0728.08 ± 0.03
SI = 3SI = 3SI = 3SI = 4
9c24.88 ± 0.2121.95 ± 0.2319.81 ± 0.1721.95 ± 0.2135.65 ± 0.08
10a8.60 ± 0.1610.01 ± 0.099.97 ± 0.1316.41 ± 0.0718.48 ± 0.12
10b8.17 ± 0.057.93 ± 0.0522.68 ± 0.085.76 ± 0.0329.53 ± 0.03
SI = 4SI = 4SI = 5
10c18.60 ± 0.1119.01 ± 0.0821.31 ± 0.1717.38 ± 0.0728.44 ± 0.13
11a8.91 ± 0.0822.75 ± 0.3421.06 ± 0.048.64 ± 0.0732.75 ± 0.05
SI = 4SI = 4
11b8.07 ± 0.027.41 ± 0.096.58 ± 0.046.07 ± 0.0640.36 ± 0.09
SI = 5SI = 5SI = 6SI = 7
11c11.46 ± 0.2114.38 ± 0.1122.73 ± 0.1217.12 ± 0.1722.38 ± 0.08
Arglabin21.82 ± 0.3415.06 ± 0.2225.09 ± 0.4530.23 ± 1.359.32 ± 0.01
Curcumin15.24 ± 0.1111.78 ± 0.3412.76 ± 0.5221.82 ± 0.9126.12 ± 0.24
Table 2. Parameters of the glycolytic function of the HeLa cell line under the action of the studied compounds.
Table 2. Parameters of the glycolytic function of the HeLa cell line under the action of the studied compounds.
GlycolysisGlycolytic CapacityGlycolytic Reserve
Control49.18 ± 0.4379.74 ± 3.1430.56 ± 2.85
154.30 ± 2.4677.18 ± 1.5622.88 ± 0.90
253.51 ± 2.8179.38 ± 2.5025.87 ± 2.60
343.46 ± 6.5877.18 ± 1.5627.44 ± 5.27
7a46.29 ± 2.5362.68 ± 3.95 **16.39 ± 1.75 *
7b37.44 ± 4.1054.29 ± 0.72 ****16.85 ± 4.01 *
7c35.03 ± 2.1146.35 ± 2.99 ****11.32 ± 3.63 ***
9a41.37 ± 1.1051.82 ± 3.82 ****10.45 ± 0.52 ***
9b35.79 ± 1.7140.02 ± 3.88 ****4.23 ± 2.32 ****
9c36.07 ± 4.5948.54 ± 2.55 ****12.47 ± 4.31 **
10a38.39 ± 4.7456.49 ± 2.98 ****14.08 ± 2.84 **
10b37.11 ± 0.4942.52 ± 1.35 ****5.41 ± 0.87 ****
10c35.46 ± 1.1046.53 ± 2.37 ****11.07 ± 1.57 ***
11a34.32 ± 1.9050.34 ± 4.93 ****16.02 ± 4.49 *
11b32.26 ± 3.66 *34.77 ± 3.05 ****2.51 ± 1.07 ****
11c35.17 ± 1.3944.02 ± 4.19 ****8.86 ± 2.93 ***
The data are represented as Mean ± SEM, n = 3. *, **, ***, and ****—p < 0.05, p < 0.01, p < 0.001, and p < 0.0001 by 1-way ANOVA with Dunnett’s test.
Table 3. The binding affinities of the synthesized compounds against hexokinase 2, 6-phosphofructo-2-kinase, and pyruvate kinase M2.
Table 3. The binding affinities of the synthesized compounds against hexokinase 2, 6-phosphofructo-2-kinase, and pyruvate kinase M2.
Binding Energy, kcal/mol
Hexokinase 26-Phosphofructo-2-KinasePyruvate Kinase M2
1−5.2−4.1−5.8
2−4.8−3.9−6.0
3−5.5−4.2−6.1
7a−7.0−7.3−7.4
7b−6.9−7.0−7.6
7c−7.3−7.8−7.9
9a−6.4−6.2−8.7
9b−6.5−6.5−9.2
9c−5.9−6.1−8.5
10a−6.0−6.4−8.4
10b−6.4−6.2−9.4
10c−6.3−5.9−9.0
11a−6.5−6.5−8.7
11b−6.0−6.3−9.9
11c−5.8−6.0−8.9
Reference compound *−7.6-−8.0
* For each enzyme, positive control was accomplished individually (see detailed description in Section 3).
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Neganova, M.E.; Aleksandrova, Y.R.; Sharova, E.V.; Smirnova, E.V.; Artyushin, O.I.; Nikolaeva, N.S.; Semakov, A.V.; Schagina, I.A.; Akylbekov, N.; Kurmanbayev, R.; et al. Conjugates of 3,5-Bis(arylidene)-4-piperidone and Sesquiterpene Lactones Have an Antitumor Effect via Resetting the Metabolic Phenotype of Cancer Cells. Molecules 2024, 29, 2765. https://doi.org/10.3390/molecules29122765

AMA Style

Neganova ME, Aleksandrova YR, Sharova EV, Smirnova EV, Artyushin OI, Nikolaeva NS, Semakov AV, Schagina IA, Akylbekov N, Kurmanbayev R, et al. Conjugates of 3,5-Bis(arylidene)-4-piperidone and Sesquiterpene Lactones Have an Antitumor Effect via Resetting the Metabolic Phenotype of Cancer Cells. Molecules. 2024; 29(12):2765. https://doi.org/10.3390/molecules29122765

Chicago/Turabian Style

Neganova, M. E., Yu. R. Aleksandrova, E. V. Sharova, E. V. Smirnova, O. I. Artyushin, N. S. Nikolaeva, A. V. Semakov, I. A. Schagina, N. Akylbekov, R. Kurmanbayev, and et al. 2024. "Conjugates of 3,5-Bis(arylidene)-4-piperidone and Sesquiterpene Lactones Have an Antitumor Effect via Resetting the Metabolic Phenotype of Cancer Cells" Molecules 29, no. 12: 2765. https://doi.org/10.3390/molecules29122765

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