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Article

Concise Synthesis of Pseudane IX, Its N-Oxide, and Novel Carboxamide Analogs with Antibacterial Activity

by
Plamen Angelov
1,*,
Yordanka Mollova-Sapundzhieva
1,
Francisco Alonso
2,
Bogdan Goranov
3,
Paraskev Nedialkov
4 and
Denitsa Bachvarova
1
1
Department of Organic Chemistry, University of Plovdiv Paisii Hilendarski, 24 Tsar Asen Str., 4000 Plovdiv, Bulgaria
2
Instituto de Síntesis Orgánica and Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Alicante, Apdo. 99, 03080 Alicante, Spain
3
Department of Microbiology, University of Food Technologies, 26 Maritza Boulevard, 4002 Plovdiv, Bulgaria
4
Department of Pharmacognosy, Faculty of Pharmacy, Medical University of Sofia, 2 Dunav Str., 1000 Sofia, Bulgaria
*
Author to whom correspondence should be addressed.
Molecules 2024, 29(15), 3676; https://doi.org/10.3390/molecules29153676
Submission received: 16 July 2024 / Revised: 30 July 2024 / Accepted: 1 August 2024 / Published: 2 August 2024

Abstract

:
A four-step synthesis of the natural product pseudane IX, starting from 3-oxododecanoic acid phenylamide and including only one chromatographic purification, was accomplished with an overall yield of 52%. The same synthetic sequence, but with a controlled partial reduction of a nitro group in the penultimate intermediate, led to the N-oxide of pseudane IX (NQNO). A shortened three-step variation of the synthesis allowed for the preparation of novel carboxamide analogs of the natural product. An agar diffusion assay against six different bacterial strains revealed significant antibacterial activity of the novel analogs against S. aureus at a concentration of 100 µg/mL. One of the novel compounds showed a remarkably broad spectrum of antibacterial activity, comparable to that of the positive control NQNO.

Graphical Abstract

1. Introduction

The natural product pseudane IX, or 2-nonyl-4-quinolone, was isolated for the first time by Hays et al. from cultures of Pseudomonas aeruginosa [1] and its structure was determined later by Wells, who accomplished the first synthesis of this compound [2]. Since then, pseudane IX has been isolated from various Pseudomonas species [3,4] and, also, from plants such as Vepris ampody (Rutaceae) [5] and Ruta angustifolia [6]. An interesting spectrum of biological activities has been reported for pseudane IX, including swarming motility inhibition in Bacillus atrophaeus [7], activity against Plasmodium falciparum [4,8] and other protozoa [8], and inhibition of Candida albicans biofilm formation [9]. Notably, pseudane IX has shown remarkable antiviral activity against the hepatitis C virus, exceeding that of the standard drug ribavirin [6]. The N-oxide of pseudane IX (NQNO) is also a known bacterial metabolite with antibiotic activity [3,10,11]. The natural sources of pseudane IX do not offer convenient isolation and sufficiently large amounts of this compound. For this reason, most of the above-cited biological studies relied on synthetic pseudane IX. The only method used for this purpose until now is based on the classic Conrad–Limpach reaction, in which an enamino ester undergoes ring closure at 270 °C in refluxing diphenyl ether [2,7,8,9,11]. The overall yield of this approach is low, and the harsh conditions impose certain limitations on the preparation of functionalized analogs. The potential of pseudane IX as a lead compound in the search for novel antimicrobials has motivated us to attempt a new synthesis of this natural product, by applying our recently published method for the preparation of 2-alkyl-4-quinolones [12]. This method is operationally simpler than the classic approach, employs milder reaction conditions, and has the additional advantage of providing access to 3-carboxamide analogs.

2. Results and Discussion

In order to synthesize a few structural analogs of pseudane IX along with the targeted natural product, we first prepared three different amides of 3-oxododecanoic acid (1ac). This was performed by acylation/deacetylation of the corresponding commercially available acetoacetamides, following our published method [13]. The β-keto amides 1 were then condensed with ethylamine, to provide enamines 2, which were directly subjected to acylation with 2-nitrobenzoyl chloride (Scheme 1). This way, good yields of the intermediates 3 were obtained (80–85%). Next, a reduction of the nitro group in intermediates 3 with Zn in CH2Cl2/HOAc was carried out. This was accompanied by spontaneous cyclization of the reduced intermediates to the corresponding 2-nonyl-4-quinolone-3-carboxamide derivatives 4 (R2 = H). Compared with our previous experiments on similar substrates with shorter alkyl chains [12], the full conversion of 3 to 4 here was slightly slower and required a larger excess of the reducing agent. Alternatively, controlled partial reduction of the nitro group under Pd- or Pt-catalyzed hydrogenation conditions led to the N-hydroxy derivatives 5 (R2 = OH). Compounds 5a,b were obtained by Pd-catalyzed transfer hydrogenation of 3a,b with ammonium formate, while compound 3c was hydrogenated with H2 over DMSO-inhibited Pt/Al2O3 [14] to give 5c without concomitant reduction at the C–Cl bond. This way, a set of six new analogs of the natural product were prepared (Scheme 1, Table 1).
The synthesis of pseudane IX required one additional decarbamoylation step after the acylation stage (Scheme 2). In theory, any of the nitrobenzoylated intermediates 3 should be susceptible to such decarbamoylation and would give the same β-enamino ketone 6 upon heating in neat H3PO4 [15]. However, we only used intermediate 3a for this purpose as it offered the best atom economy and the lowest overall price of the synthesis. This reaction was carried out by stirring compound 3a in neat H3PO4 for 2 h at 60 °C. It should be noted that the time needed for the completion of the reaction was longer than previously reported by us for similar substrates with shorter alkyl chains [12]. The β-enamino ketone 6 was obtained in an 86% yield and its 1H NMR spectrum in DMSO-d6 indicated a mixture of Z/E isomers in a ratio of 85/15. In the last step, the β-enamino ketone 6 successfully underwent a reduction of the nitro group with Zn in CH2Cl2/HOAc and the ensuing spontaneous cyclization completed the synthesis of pseudane IX in 72% yield (7, Scheme 2). To stop the reduction at the N-oxide level, we carried out atmospheric pressure hydrogenation of the β-enamino ketone 6 with H2 over DMSO-inhibited Pt/Al2O3 [14]. Under these conditions, the N-oxide of pseudane IX (8) was cleanly obtained in 70% yield.
Depending on the method of isolation, compound 8 was obtained in two distinctly different forms. When the crude product was only triturated with diethyl ether, it solidified as a white powder with good solubility in DMSO and a mp of 103–104 °C. The NMR spectrum of this material was taken in DMSO-d6 at 25 °C and was indicative of a 4-quinolinol-N-oxide tautomeric form (Scheme 3), with the C3-H signal appearing at 7.08 ppm. On the other hand, when compound 8 passed through a silica gel column with diethyl ether as the eluent, it crystallized as colorless needles with a mp of 146–147 °C and a very poor DMSO solubility at 25 °C. Because of the poor solubility, the NMR spectrum in DMSO-d6 had to be run at 70 °C, and this time it clearly indicated an N-hydroxy-4-quinolone tautomeric form, with the C3-H signal appearing at 5.97 ppm (See Supplementary Information). A similar change was not observed in compound 7, which was registered only as the 4-quinolone tautomer, regardless of the isolation method.
The antibacterial activity of the novel analogs 4 and 5 was tested at a concentration of 100 µg/mL against a set of six bacterial strains, using the agar diffusion method. The known natural compounds pseudane IX (7) and its N-oxide (8) were also included in the assay for comparison. The N-oxide 8 is known for its antibiotic activity [10,11] and served as the positive control. The observed inhibition zones (Table 2) indicated higher activity of the N-hydroxy derivatives 5 compared with that of their reduced counterparts 4, with S. aureus ATCC 25923 being the most susceptible among the studied bacteria. Notably, there was a sharp contrast in the susceptibility of the other assayed S. aureus strain (ATCC 6538), which was moderately inhibited by only one of the novel compounds (5c). Compound 5c was also the one with the broadest activity spectrum, inhibiting all of the studied bacteria and approaching the activity of the natural antibiotic 8. Against the resilient S. aureus strain (ATCC 6538), 5c even outperformed 8 with a slightly larger inhibition zone.
In conclusion, we have accomplished a convenient synthesis of two natural products with interesting biological profiles—pseudane IX and its N-oxide. The overall yield over four steps, starting from the phenylamide of 3-oxododecanoic acid and involving only one chromatographic purification, is 52% and 50% respectively. We have also demonstrated that the synthetic method used for this purpose allows for easy access to novel carboxamide analogs of these compounds. A broad antibacterial spectrum was observed in one of the newly obtained analogs, providing a lead for further structural optimization.

3. Materials and Methods

All reagents and solvents were purchased from Sigma-Aldrich, Darmstadt, Germany, and were used as supplied. Petrol refers to the 40–60 °C fraction, HOAc refers to acetic acid, and NMM refers to N-methylmorpholine. NMR spectra were run on a Bruker NEO 400 (400/100 MHz 1H/13C) spectrometer. Chemical shifts (δ, ppm) are downfield from TMS. TLC was performed on aluminum-backed Silica gel 60 sheets (Merck) with KMnO4 staining. Melting point measurements were performed in capillary tubes on KRÜSS M5000 automatic mp meter and were not corrected. Mass spectral measurements were performed on a Thermo Fisher Scientific Q Exactive Plus high-resolution mass spectrometer with a heated electrospray ionization source (HESI-II). The agar diffusion antibacterial assay was carried out in LBG agar, in 6 mm wells, with 60 µL loading of 100 µg/mL solutions of the tested compounds in DMSO, according to a published protocol [16].
The starting amides of 3-oxododecanoic acid (1ac) were prepared according to a previously published method [13], then the conversion of 1 to α-C-acylated β-enamino amides 3 was achieved according to another published general procedure [12].
  • 3-Ethylamino-2-(2-nitrobenzoyl)-dodec-2-enoic acid phenylamide (3a): yellowish oil; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.83 (t, J = 7.0, 3H, CH3), 1.12–1.24 (m, 12H, 6 × CH2), 1.27 (t, J = 7.2, 3H, NHCH2CH3), 1.60 (m, 2H, βCH2), 2.45 (m, 2H, αCH2), 3.50 (m, 2H, NHCH2CH3), 6.94 (m, 1H, ArH), 7.15 (m, 2H, ArH), 7.27 (m, 2H, ArH), 7.50 (m, 2H, ArH), 7.65 (td, J = 7.5, J = 1.2, 1H, ArH), 7.96 (dd, J = 8.2, J = 1.0, 1H, ArH), 9.70 (br s, 1H, CONH), 11.62 (t, J = 5.6, 1H, NHCH2CH3); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.38, 15.77, 22.53, 27.94, 28.81, 29.05, 29.16, 29.51, 29.73, 31.65, 38.04, 107.58, 119.62, 123.62, 124.27, 128.78, 128.83, 129.84, 133.90, 137.70, 139.47, 146.46, 167.14, 169.33, 186.00; HRMS m/z (ES+): calcd. for C27H36N3O4+ [M+H]+ 466.2700, found 466.2704.
  • 3-Ethylamino-2-(2-nitrobenzoyl)-dodec-2-enoic acid 4-methoxyphenylamide (3b): yellowish oil; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.82 (t, J = 7.0, 3H, CH3), 1.12–1.24 (m, 12H, 6 × CH2), 1.26 (t, J = 7.2, 3H, NHCH2CH3), 1.60 (m, 2H, βCH2), 2.44 (m, 2H, αCH2), 3.49 (m, 2H, NHCH2CH3), 3.66 (s, 3H, OCH3), 6.73 (m, 2H, ArH), 7.15 (m, 2H, ArH), 7.50 (m, 2H, ArH), 7.66 (td, J = 7.5, J = 1.2, 1H, ArH), 7.96 (dd, J = 8.2, J = 0.9, ArH), 9.52 (br s, 1H, CONH), 11.60 (t, J = 5.5, 1H, NHCH2CH3); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.37, 15.78, 22.54, 27.95, 28.83, 29.08, 29.18, 29.54, 29.69, 31.67, 38.01, 55.52, 113.98, 121.24, 124.25, 128.82, 129.81, 132.60, 133.85, 137.72, 146.46, 155.72, 166.70, 169.20, 185.94; HRMS m/z (ES+): calcd. for C28H38N3O5+ [M+H]+ 496.2806, found 496.2801.
  • 3-Ethylamino-2-(2-nitrobenzoyl)-dodec-2-enoic acid 4-chlorophenylamide (3c): yellowish oil; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.82 (t, J = 7.1, 3H, CH3), 1.10–1.22 (m, 12H, 6 × CH2), 1.27 (t, J = 7.2, 3H, NHCH2CH3), 1.59 (m, 2H, βCH2), 2.44 (m, 2H, αCH2), 3.50 (m, 2H, NHCH2CH3), 7.21 (m, 2H, ArH), 7.32 (m, 2H, ArH), 7.49 (m, 2H, ArH), 7.65 (m, 1H, ArH), 7.96 (m, 1H, ArH), 9.87 (br s, 1H, CONH), 11.62 (t, J = 5.6, 1H, NHCH2CH3); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.37, 15.77, 22.54, 27.86, 28.74, 29.07, 29.14, 29.43, 29.64, 31.65, 38.07, 120.91, 124.28, 127.19, 128.78, 129.88, 133.93, 137.57, 138.46, 146.40, 167.28, 186.02; HRMS m/z (ES+): calcd. for C27H35ClN3O4+ [M+H]+ 500.2311, found 500.2318.
  • Synthesis of 3-Ethylamino-1-(2-nitrophenyl)-dodec-2-en-1-one (6): Intermediate 3a (466 mg, 1 mmol) was mixed with anhydrous H3PO4 (5–6 g) in a glass vial. The mixture was stirred intensely for two hours at 60 °C, then the vial was cooled to r.t. with tap water, and the contents were rinsed and poured into a separatory funnel with 50–70 mL of water. The product was extracted in CH2Cl2 (2 × 40 mL), the combined organic layers were dried (Na2SO4), and the solvent was removed under reduced pressure. The crude product obtained this way was sufficiently clean to be used directly in the next stage, without further purification. An analytically pure sample can be obtained by column chromatography on silica gel with Et2O:Petrol (1:1) as the eluent, increasing polarity to Et2O:Petrol (2:1). Yield: 298 mg yellowish oil (86%). The 1H NMR spectra of 6 in DMSO-d6 indicate a Z/E isomeric mixture in a ratio of 85:15. Only NMR signals corresponding to the major Z isomer are listed below. 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.85 (t, J = 7.0, 3H, CH3), 1.19 (t, J = 7.2, 3H, NHCH2CH3), 1.23–1.39 (m, 12H, 6 × CH2), 1.53 (m, 2H, βCH2), 2.34 (m, 2H, αCH2), 3.39 (m, 2H, NHCH2CH3), 5.35 (s, 1H, CH), 7.57–7.70 (m, 3H, ArH), 7.81 (m, 1H, ArH), 10.94 (t, J = 5.6, 1H, NHCH2CH3); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.39, 15.72, 22.56, 27.78, 29.12, 29.17, 29.24, 29.35, 31.74, 37.61, 92.26, 124.12, 129.11, 130.65, 132.79, 136.94, 148.93, 170.38, 184.65; HRMS m/z (ES+): calcd. for C20H31N2O3+ [M+H]+ 347.2329, found 347.2331.
  • Synthesis of compounds 4, 5, 7, and 8 by reductive cyclization of intermediates 3 and 6. General procedure A (preparation of products 4ac and 7): Zn powder (2 g, prewashed with 1% HCl, water, and acetone) was added to the corresponding nitro-intermediate 3 or 6 (1 mmol), dissolved in a mixture of CH2Cl2 (30 mL) and acetic acid (4 mL). The heterogeneous mixture was magnetically stirred for 24 h at r.t., and then the solids were filtered off with suction and rinsed thoroughly with CH2Cl2. The dichloromethane filtrate was transferred to a separatory funnel and was extracted with water (50 mL) and, then, with a saturated aqueous solution of NaHCO3 (25 mL). The organic phase was dried with anhydrous sodium sulfate, the drying agent was filtered off, and the solvent was removed under reduced pressure. The products crystallized upon trituration with Et2O. Where necessary, further purification can be performed by column chromatography on silica gel with Et2O as the eluent, increasing polarity to Et2O:CH3OH 20:1.
  • General procedure B (preparation of products 5a and 5b): To the corresponding nitro-intermediate 3 (100 mg) in CH3OH (10–15 mL), HCOONH4 (300 mg) and Pd on charcoal (10 mg, 10 w% Pd) were added. The mixture was magnetically stirred for 90 min. at r.t., and the catalyst was removed by vacuum filtration through a pad of celite on a sintered glass funnel. The celite was rinsed thoroughly with methanol, and the solvent was removed from the filtrate under reduced pressure. Then, water (50 mL) was added to the solid residue and the product was extracted in CH2Cl2 (3 × 20 mL). The combined organic layers were dried with anhydrous sodium sulfate, the drying agent was filtered off, and the solvent was removed under reduced pressure. The products crystallized upon trituration with Et2O. Where necessary, further purification can be performed by column chromatography on silica gel with Et2O as the eluent, increasing polarity to Et2O:CH3OH 20:1.
  • General procedure C (preparation of products 5c and 8): The corresponding nitro-intermediate 3 or 6 (0.5 mmol) was dissolved in isopropanol (IPA) (2 mL). Then, DMSO (0.013 g, 0.012 mL), n-butylamine (0.037 g, 0.050 mL), and 5 wt% Pt/Al2O3 (0.010 g) were added to the solution. The air in the reaction vessel was evacuated and replaced with H2 with the help of a three-way stopper. The H2 atmosphere was kept with a balloon for the next 24 h, while the reaction mixture was magnetically stirred at 25 °C. Then, the catalyst was filtered off through a pad of celite on a sintered glass funnel, with thorough rinsing with IPA. The IPA was removed from the filtrate on a rotary evaporator under reduced pressure. To remove any residual n-butylamine and DMSO, dilute aqueous HCl was added to the residue and the product was extracted in CH2Cl2 (2 × 30 mL). The combined organic layers were dried with anhydrous sodium sulfate, the solvent was removed under reduced pressure, and the oily residue solidified upon trituration with diethyl ether, providing practically clean products. Analytically pure samples were obtained by column chromatography on a short silica gel plug, using Et2O as the eluent.
  • 2-Nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid phenylamide (4a): white solid, mp 192–193 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.83 (t, J = 6.9, 3H, CH3), 1.17–1.33 (m, 10H, 5 × CH2), 1.39 (m, 2H, γCH2), 1.72 (m, 2H, βCH2), 3.16 (m, 2H, αCH2), 7.06 (m, 1H, ArH), 7.33 (m, 2H, ArH), 7.43 (m, 1H, ArH), 7.64–7.76 (m, 4H, ArH), 8.23 (dd, J = 8.2, J = 1.1, 1H, ArH), 12.17 (br s, 1H, NH), 12.20 (s, 1H, NH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.40, 22.56, 29.14, 29.31, 29.52, 29.88, 31.74, 33.59, 112.38, 118.61, 120.06, 123.49, 124.84, 125.15, 125.88, 129.22, 133.08, 138.85, 139.81, 158.87, 164.58, 176.70; HRMS m/z (ES+): calcd. for C25H31N2O2+ [M+H]+ 391.2380, found 391.2387.
  • 2-Nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid 4-methoxyphenylamide (4b): white solid, mp 150–151 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.82 (t, J = 6.9, 3H, CH3), 1.17–1.33 (m, 10H, 5 × CH2), 1.38 (m, 2H, γCH2), 1.72 (m, 2H, βCH2), 3.15 (m, 2H, αCH2), 3.74 (s, 3H, OCH3), 6.90 (m, 2H, ArH), 7.42 (m, 1H, ArH), 7.63 (m, 3H, ArH), 7.73 (m, 1H, ArH), 8.21 (dd, J = 8.1, J = 1.1, 1H, ArH), 12.03 (s, 1H, NH), 12.12 (br s, 1H, NH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.40, 22.56, 29.15, 29.17, 29.33, 29.52, 29.91, 31.75, 33.56, 55.61, 112.54, 114.34, 118.60, 121.47, 124.75, 125.14, 125.85, 132.99, 133.03, 138.88, 155.55, 158.63, 164.16, 176.62; HRMS m/z (ES+): calcd. for C26H33N2O3+ [M+H]+ 421.2486, found 421.2481.
  • 2-Nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid 4-chlorophenylamide (4c): white solid, mp 172–173 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.83 (t, J = 6.9, 3H, CH3), 1.17–1.32 (m, 10H, 5 × CH2), 1.38 (m, 2H, γCH2), 1.71 (m, 2H, βCH2), 3.13 (m, 2H, αCH2), 7.37 (m, 2H, ArH), 7.43 (m, 1H, ArH), 7.65 (m, 1H, ArH), 7.74 (m, 3H, ArH), 8.21 (dd, J = 8.2, J = 1.1, 1H, ArH), 12.19 (br s, 1H, NH), 12.30 (s, 1H, NH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.39, 22.56, 29.14, 29.32, 29.49, 29.84, 31.74, 33.54, 112.24, 118.65, 121.54, 124.89, 125.11, 125.84, 126.96, 129.09, 133.12, 138.74, 138.87, 158.89, 164.73, 176.64; HRMS m/z (ES+): calcd. for C25H30ClN2O2+ [M+H]+ 425.1990, found 425.1989.
  • 1-Hydroxy-2-nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid phenylamide (5a): white solid, mp 162–163 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.84 (t, J = 7.0, 3H, CH3), 1.17–1.32 (m, 10H, 5 × CH2), 1.39 (m, 2H, γCH2), 1.76 (m, 2H, βCH2), 3.12 (m, 2H, αCH2), 7.07 (m, 1H, ArH), 7.33 (m, 2H, ArH), 7.49 (m, 1H, ArH), 7.71 (m, 2H, ArH), 7.83 (m, 1H, ArH), 7.93 (m, 1H, ArH), 8.25 (dd, J = 8.1, J = 1.2, 1H, ArH), 11.30 (s, 1H, NH), 12.10 (br s, 1H, OH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.41, 22.56, 28.44, 29.00, 29.15, 29.25, 29.58, 31.73, 115.05, 115.66, 119.90, 123.61, 124.96, 125.52, 125.97, 129.16, 133.33, 139.86, 139.95, 155.74, 164.60, 173.62; HRMS m/z (ES+): calcd. for C25H31N2O3+ [M+H]+ 407.2329, found 407.2324.
  • 1-Hydroxy-2-nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid 4-methoxyphenylamide (5b): white solid, mp 163–164 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.84 (t, J = 6.9, 3H, CH3), 1.15–1.32 (m, 10H, 5 × CH2), 1.38 (m, 2H, γCH2), 1.75 (m, 2H, βCH2), 3.11 (m, 2H, αCH2), 3.74 (s, 3H, OCH3), 6.91 (m, 2H, ArH), 7.47 (m, 1H, ArH), 7.63 (m, 2H, ArH), 7.82 (m, 1H, ArH), 7.92 (m, 1H, ArH), 8.24 (m, 1H, ArH), 11.15 (s, 1H, NH), 12.13 (br s, 1H, OH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.40, 22.57, 28.44, 29.01, 29.17, 29.27, 29.59, 31.74, 55.61, 114.28, 115.16, 115.64, 121.32, 124.87, 125.51, 125.95, 133.09, 133.23, 139.95, 155.63, 164.13, 173.57; HRMS m/z (ES+): calcd. for C26H33N2O4+ [M+H]+ 437.2435, found 437.2434.
  • 1-Hydroxy-2-nonyl-4-oxo-1,4-dihydroquinoline-3-carboxylic acid 4-chlorophenylamide (5c): white solid, mp 182–183 °C; 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.83 (t, J = 7.0, 3H, CH3), 1.14–1.30 (m, 10H, 5 × CH2), 1.38 (m, 2H, γCH2), 1.75 (m, 2H, βCH2), 3.09 (m, 2H, αCH2), 7.38 (m, 2H, ArH), 7.49 (m, 1H, ArH), 7.75 (m, 2H, ArH), 7.83 (m, 1H, ArH), 7.93 (m, 1H, ArH), 8.24 (dd, J = 8.1, J = 1.2, 1H, ArH), 11.40 (s, 1H, NH), 12.13 (br s, 1H, OH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.40, 22.57, 28.37, 28.96, 29.16, 29.24, 29.50, 31.73, 114.93, 115.70, 121.36, 125.02, 125.50, 125.94, 127.14, 129.07, 133.39, 138.80, 139.97, 155.68, 164.77, 173.53; HRMS m/z (ES+): calcd. for C25H30ClN2O3+ [M+H]+ 441.1939, found 441.1932.
  • 2-Nonyl-1H-quinolin-4-one (7): white solid, mp 135–136 °C (Lit. [2] mp 138–139 °C, Lit. [3] mp 134 °C); 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.83 (t, J = 6.7, 3H, CH3), 1.18–1.36 (m, 12H, 6 × CH2), 1.66 (m, 2H, βCH2), 2.58 (m, 2H, αCH2), 5.92 (s, 1H, C3-H), 7.27 (m, 1H, ArH), 7.54 (m, 1H, ArH), 7.61 (m, 1H, ArH), 8.04 (m, 1H, ArH), 11.50 (br s, 1H, NH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.39, 22.55, 28.81, 28.97, 29.12, 29.19, 29.35, 31.72, 33.72, 108.09, 118.33, 123.16, 125.10, 125.22, 131.87, 140.62, 154.02, 177.33; HRMS m/z (ES+): calcd. for C18H26NO+ [M+H]+ 272.2009, found 272.2007.
  • 2-Nonyl-1-oxyquinolin-4-ol (8, quinolinol tautomer): white solid, mp 103–104 °C (Lit. [10] mp 148–149 °C, Lit. [3] mp 132 °C); 1H-NMR (400 MHz, DMSO-d6, δ ppm, J Hz): 0.84 (t, J = 6.8, 3H, CH3), 1.17–1.43 (m, 12H, 6 × CH2), 1.75 (m, 2H, βCH2), 3.09 (m, 2H, αCH2), 7.08 (s, 1H, C3-H), 7.77 (m, 1H, ArH), 8.07 (m, 1H, ArH), 8.25 (m, 1H, ArH), 8.30 (m, 1H, ArH); 13C-NMR (100 MHz, DMSO-d6, δ ppm): 14.40, 22.55, 27.55, 29.13, 29.15, 29.29, 31.73, 31.75, 105.48, 117.31, 121.35, 124.25, 127.70, 134.82, 140.03, 158.60, 167.31; HRMS m/z (ES+): calcd. for C18H26NO2+ [M+H]+ 288.1958, found 288.1963.
  • 1-Hydroxy-2-nonyl-(1H)-quinolin-4-one (8, quinolone tautomer): white solid, mp 146–147 °C (Lit. [10] mp 148–149 °C, Lit. [3] mp 132 °C); 1H-NMR (400 MHz, DMSO-d6, 70 °C, δ ppm, J Hz): 0.87 (t, J = 6.9, 3H, CH3), 1.25–1.43 (m, 12H, 6 × CH2), 1.70 (m, 2H, βCH2), 2.77 (m, 2H, αCH2), 5.97 (s, 1H, C3-H), 7.36 (m, 1H, ArH), 7.72 (m, 1H, ArH), 7.86 (m, 1H, ArH), 8.12 (m, 1H, ArH), 11.43 (br s, 1H, OH); 13C-NMR (100 MHz, DMSO-d6, 70 °C, δ ppm): 14.22, 22.43, 27.77, 29.02, 29.08, 29.12, 29.25, 31.22, 31.66, 107.13, 115.45, 123.72, 125.30, 125.40, 132.12, 141.09, 153.83; HRMS m/z (ES+): calcd. for C18H26NO2+ [M+H]+ 288.1958, found 288.1954.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules29153676/s1, File S1: NMR and ESI+ mass spectra of all final products.

Author Contributions

Conceptualization, P.A.; methodology, P.A. and F.A.; investigation, B.G. (microbiology), P.N. (mass spectrometry), Y.M.-S., P.A. and D.B. (synthesis); writing—original draft preparation, P.A.; writing—review and editing, P.A. and F.A.; supervision, P.A. and F.A.; All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the Bulgarian National Science Fund under grant number KP-06-N59/14; by the European Union—NextGenerationEU, through the National Recovery and Resilience Plan of the Republic of Bulgaria, project DUECOS BG-RRP-2.004-0001-C01; and by the Generalitat Valenciana, Spain (GV; grant number CIAICO/2022/017).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The original contributions presented in the study are included in the article and Supplementary Materials. The raw NMR data is available for download at https://zenodo.org/doi/10.5281/zenodo.12749916. Further inquiries can be directed to the corresponding author/s.

Conflicts of Interest

The authors declare no conflicts of interest.

References

  1. Hays, E.E.; Wells, I.C.; Katzman, P.A.; Cain, C.K.; Jacobs, F.A.; Thayer, S.A.; Doisy, E.A.; Gaby, W.L.; Roberts, E.C.; Muir, R.D.; et al. Antibiotic substances produced by Pseudomonas aeruginosa. J. Biol. Chem. 1945, 159, 725–750. [Google Scholar] [CrossRef]
  2. Wells, I.C. Antibiotic substances produced by Pseudomonas aeruginosa. Syntheses of Pyo 1b, Pyo 1c, and Pyo III. J. Biol. Chem. 1952, 196, 331–340. [Google Scholar] [CrossRef] [PubMed]
  3. Bultel-Poncé, V.; Berge, J.P.; Debitus, C.; Jean-Louis, N.; Michèle, G. Metabolites from the Sponge-Associated Bacterium Pseudomonas Species. Mar. Biotechnol. 1999, 1, 384–390. [Google Scholar] [CrossRef] [PubMed]
  4. Supong, K.; Thawai, C.; Supothina, S.; Auncharoen, P.; Pittayakhajonwut, P. Antimicrobial and anti-oxidant activities of quinoline alkaloids from Pseudomonas aeruginosa BCC76810. Phytochem. Lett. 2016, 17, 100–106. [Google Scholar] [CrossRef]
  5. Kan-Fan, C.; Das, B.C.; Boiteau, P.; Potier, P. Alcaloïdes de Vepris ampody (Rutacées). Phytochemistry 1970, 9, 1283–1291. [Google Scholar] [CrossRef]
  6. Wahyuni, T.S.; Widyawaruyanti, A.; Lusida, M.I.; Fuad, A.; Soetjipto; Fuchino, H.; Kawahara, N.; Hayashi, Y.; Aoki, C.; Hotta, H. Inhibition of hepatitis C virus replication by chalepin and pseudane IX isolated from Ruta angustifolia leaves. Fitoterapia 2014, 99, 276–283. [Google Scholar] [CrossRef] [PubMed]
  7. Reen, F.J.; Shanahan, R.; Cano, R.; O’Gara, F.; McGlacken, G.P. A structure activity-relationship study of the bacterial signal molecule HHQ reveals swarming motility inhibition in Bacillus atrophaeus. Org. Biomol. Chem. 2015, 13, 5537–5541. [Google Scholar] [CrossRef] [PubMed]
  8. Szamosvári, D.; Sylvester, K.; Schmid, P.; Lu, K.-Y.; Derbyshire, E.R.; Böttcher, T. Close the ring to break the cycle: Tandem quinolone-alkyne-cyclisation gives access to tricyclic pyrrolo[1,2-a]quinolin-5-ones with potent anti-protozoal activity. Chem. Commun. 2019, 55, 7009–7012. [Google Scholar] [CrossRef] [PubMed]
  9. Reen, F.J.; Phelan, J.P.; Gallagher, L.; Woods, D.F.; Shanahan, R.M.; Cano, R.; Ó Muimhneacháin, E.; McGlacken, G.P.; O’Gara, F. Exploiting interkingdom interactions for development of small-molecule inhibitors of Candida albicans biofilm formation. Antimicrob. Agents Chemother. 2016, 60, 5894–5905. [Google Scholar] [CrossRef] [PubMed]
  10. Cornforth, J.W.; James, A.T. Structure of a naturally occurring antagonist of dihydrostreptomycin. Biochem. J. 1956, 63, 124–130. [Google Scholar] [CrossRef] [PubMed]
  11. Szamosvári, D.; Prothiwa, M.; Dieterich, C.L.; Böttcher, T. Profiling structural diversity and activity of 2-alkyl-4(1H)-quinolone N-oxides of Pseudomonas and Burkholderia. Chem. Commun. 2020, 56, 6328–6331. [Google Scholar] [CrossRef] [PubMed]
  12. Mollova-Sapundzhieva, Y.; Angelov, P.; Georgiev, D.; Yanev, P. Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors. Beilstein J. Org. Chem. 2023, 19, 1804–1810. [Google Scholar] [CrossRef] [PubMed]
  13. Angelov, P. Enamine-Based Domino Strategy for C-Acylation/Deacetylation of Acetoacetamides: A Practical Synthesis of β-Keto Amides. Synlett 2010, 2010, 1273–1275. [Google Scholar] [CrossRef]
  14. Mollova-Sapundzhieva, Y.; Alonso, F.; Angelov, P.; Nedialkov, P. Synthesis of 4-Quinolone N-Oxides via Controlled Partial Hydrogenation of 2-Nitrobenzoyl Enamines. ChemRxiv 2024. [Google Scholar] [CrossRef]
  15. Venkov, A.P.; Angelov, P.A. Synthesis of Unsymmetrical β-Enamino Ketones. Synthesis 2003, 2003, 2221–2225. [Google Scholar] [CrossRef]
  16. Tantray, J.A.; Mansoor, S.; Wani, R.F.C.; Un Nissa, N. Antibiotic resistance test by agar well diffusion method. In Basic Life Science Methods; Academic Press: Cambridge, MA, USA, 2023; Chapter 46; p. 189. [Google Scholar] [CrossRef]
Scheme 1. Reagents and conditions: (i) EtNH2 (70% aq, 1.05–1.15 equiv), CH2Cl2, Na2SO4, 24 h, rt; (ii) NMM (1 equiv), DMAP (0.2 equiv), 2-nitrobenzoyl chloride (1 equiv), CH2Cl2, 2 h, rt; (iii) either A: Zn/HOAc/CH2Cl2, rt, overnight, B: HCOONH4, Pd/C, CH3OH, rt, or C: H2 (balloon), 5 wt% Pt/Al2O3, n-BuNH2, DMSO, isopropanol, 24 h, rt.
Scheme 1. Reagents and conditions: (i) EtNH2 (70% aq, 1.05–1.15 equiv), CH2Cl2, Na2SO4, 24 h, rt; (ii) NMM (1 equiv), DMAP (0.2 equiv), 2-nitrobenzoyl chloride (1 equiv), CH2Cl2, 2 h, rt; (iii) either A: Zn/HOAc/CH2Cl2, rt, overnight, B: HCOONH4, Pd/C, CH3OH, rt, or C: H2 (balloon), 5 wt% Pt/Al2O3, n-BuNH2, DMSO, isopropanol, 24 h, rt.
Molecules 29 03676 sch001
Scheme 2. Synthesis of pseudane IX (7) and its N-oxide (8) from intermediate 3a. Reagents and conditions: (i) H3PO4, 60 °C, 2 h; (ii) either A: Zn/HOAc/CH2Cl2, rt, overnight, or C: H2 (balloon), 5 wt% Pt/Al2O3, n-BuNH2, DMSO, isopropanol, 24 h, rt.
Scheme 2. Synthesis of pseudane IX (7) and its N-oxide (8) from intermediate 3a. Reagents and conditions: (i) H3PO4, 60 °C, 2 h; (ii) either A: Zn/HOAc/CH2Cl2, rt, overnight, or C: H2 (balloon), 5 wt% Pt/Al2O3, n-BuNH2, DMSO, isopropanol, 24 h, rt.
Molecules 29 03676 sch002
Scheme 3. Tautomeric change of compound 8 (NQNO) during chromatography on silica gel.
Scheme 3. Tautomeric change of compound 8 (NQNO) during chromatography on silica gel.
Molecules 29 03676 sch003
Table 1. Isolated yield of products 4 and 5, obtained according to Scheme 1.
Table 1. Isolated yield of products 4 and 5, obtained according to Scheme 1.
ProductR1R2ConditionsYield (%)
4aC6H5HA84
4bp-MeOC6H4HA80
4cp-ClC6H4HA72
5aC6H5OHB70
5bp-MeOC6H4OHB70
5cp-ClC6H4OHC82
Table 2. Antibacterial assay of the synthesized compounds at 100 µg/mL in DMSO, with 60 µL loading in 6 mm agar wells.
Table 2. Antibacterial assay of the synthesized compounds at 100 µg/mL in DMSO, with 60 µL loading in 6 mm agar wells.
 Sterile Zone Diameter (mm) 1
ProductE. coli
ATCC 25922
E. coli
ATCC 8739
S. aureus
ATCC 25923
S. aureus
ATCC 6538
Enterococcus faecalis
ATCC 29212
B. subtilis NBIMCC 1208
4a--19---
4b--11---
4c--9--9
5a-1525--15
5b--20-1515
5c151519161515
7--14--9
8141527141420
1 Including 6 mm well diameter.
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MDPI and ACS Style

Angelov, P.; Mollova-Sapundzhieva, Y.; Alonso, F.; Goranov, B.; Nedialkov, P.; Bachvarova, D. Concise Synthesis of Pseudane IX, Its N-Oxide, and Novel Carboxamide Analogs with Antibacterial Activity. Molecules 2024, 29, 3676. https://doi.org/10.3390/molecules29153676

AMA Style

Angelov P, Mollova-Sapundzhieva Y, Alonso F, Goranov B, Nedialkov P, Bachvarova D. Concise Synthesis of Pseudane IX, Its N-Oxide, and Novel Carboxamide Analogs with Antibacterial Activity. Molecules. 2024; 29(15):3676. https://doi.org/10.3390/molecules29153676

Chicago/Turabian Style

Angelov, Plamen, Yordanka Mollova-Sapundzhieva, Francisco Alonso, Bogdan Goranov, Paraskev Nedialkov, and Denitsa Bachvarova. 2024. "Concise Synthesis of Pseudane IX, Its N-Oxide, and Novel Carboxamide Analogs with Antibacterial Activity" Molecules 29, no. 15: 3676. https://doi.org/10.3390/molecules29153676

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