Analysis of MTHFR and MTRR Gene Polymorphisms in Iranian Ventricular Septal Defect Subjects
Abstract
:1. Introduction
2. Results and Discussion
2.1. Socio-Demographic Characteristics
2.2. C677T Polymorphism of MTHFR Gene
2.3. C524T and A66G Polymorphisms of MTRR Gene
2.4. DNA Sequencing
2.5. Study Limitations
3. Materials and Methods
3.1. Ethical Approval
3.2. Study Subjects
3.3. Genomic DNA Extraction
3.4. Genotyping MTHFR and MTRR Gene Polymorphisms
3.5. Automated Sequencing
3.6. Statistical Analysis
4. Conclusions
Acknowledgments
Conflict of Interest
References
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Gene Variants | Disease | Population/Reference | No. of Subjects | p-value |
---|---|---|---|---|
MTRR A66G | Vascular disease | Italy [17] | 114 | NS |
MTRR A66G | CAD | Morocco [18] | 151 | S |
MTHFR C677T | CAD | South Indians [19] | 108 | S |
MTHFR C677T | Venous Thrombosis | Iran [20] | 200 | NS |
MTHFR C677T | CHD | Japan [21] | 233 | S |
MTHFR C677T | CHD | Taiwan [22] | 231 | S |
GATA4 | CHD | USA [23] | 157 | NS |
GATA4 | CHD | Canada [24] | 120 | S |
GATA4, NKX2.5 | CHD | China [25] | 62 | S |
NKX2.5 | CHD | China [26] | 230 | NS |
TBX5 | VSD | China [1] | 192 | S |
Gene | Genotypes and Alleles | Case (%) | Control (%) |
---|---|---|---|
C677T Genotypes | CC | 63 (51.2) | 71 (56.8) |
CT | 60 (48.8) | 54 (43.2) | |
p value | 0.38 * | ||
Odds Ratio (95% CI) | 0.82 (0.49–1.31) | ||
Alleles | C | 186 (75.6) | 196 (78.4) |
T | 60 (24.4) | 54 (21.6) | |
p value | 0.47 * | ||
Odds Ratio (95% CI) | 0.85 (0.56–1.30) |
Gene | Genotypes and Alleles | Case (%) | Control (%) |
---|---|---|---|
C524T Genotypes | CC | 53 (43.1) | 66 (52.8) |
CT | 50 (40.6) | 54 (43.2) | |
TT | 20 (16.3) | 5 (4.0) | |
p value | 0.00 * | ||
CC vs. CT, p value | 0.60 ** | ||
Odds Ratio (95% CI) | 0.87 (0.51–1.47) | ||
CC vs. TT, p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.20 (0.07–0.57) | ||
CT vs. TT, p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.23 (0.08–0.66) | ||
Alleles | C | 156 (63.4) | 186 (74.4) |
T | 90 (36.6) | 64 (25.6) | |
p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.596 (0.40–0.87) | ||
Gene | Genotypes and Alleles | Case (%) | Control (%) |
A66G Genotypes | AA | 41 (33.3) | 62 (49.6) |
AG | 54 (43.9) | 53 (42.4) | |
GG | 28 (22.8) | 10 (8.0) | |
p value | 0.00 * | ||
AA vs. AG, p value | 0.12 * | ||
Odds Ratio (95% CI) | 0.65 (0.38–1.12) | ||
AA vs. GG, p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.24 (0.10–0.54) | ||
AG vs. GG, p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.36 (0.16–0.82) | ||
Alleles | A | 136 (55.3) | 177 (70.8) |
G | 110 (44.7) | 73 (29.2) | |
p value | 0.00 * | ||
Odds Ratio (95% CI) | 0.51 (035–0.73) |
Gene Polymorphism | Forward Primer (FP) Reverse Primer (RP) | Restriction Endonuclease Enzymes | PCR Products (bp) | Restriction Fragment Size (bp) |
---|---|---|---|---|
MTHFR C677T | FP-5′-TGAAGGAGAAGGT GTCTGCGGGA-3′ RP-5′AGGACGGTGCGGT GCGGTGAGAGTG-3′ | Hinf1 | 198 | Wild type: 198 Mutant: 175, 23 Heterozygote: 198,175, 23 |
MTRR C524T | FP-5′-GTCAAGCAGAGGACA AGAG-3′ RP-5′AGAGACTCCTGCAGAT GTAC-3′ | Xho1 | 309 | Wild type: 247, 62 Mutant: 309 Heterozygote: 309, 247, 62 |
MTRR A66G | FP-5′-CAGGCAAAGGCCAT CGCAGAAGACAT-3′ RP-5′CACTTCCCAACCAAAA TTCTTCAAAG-3′ | Nde1 | 151 | Wild type: 126, 25 Mutant: 151 Heterozygote: 151, 126, 25 |
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Pishva, S.R.; Vasudevan, R.; Etemad, A.; Heidari, F.; Komara, M.; Ismail, P.; Othman, F.; Karimi, A.; Sabri, M.R. Analysis of MTHFR and MTRR Gene Polymorphisms in Iranian Ventricular Septal Defect Subjects. Int. J. Mol. Sci. 2013, 14, 2739-2752. https://doi.org/10.3390/ijms14022739
Pishva SR, Vasudevan R, Etemad A, Heidari F, Komara M, Ismail P, Othman F, Karimi A, Sabri MR. Analysis of MTHFR and MTRR Gene Polymorphisms in Iranian Ventricular Septal Defect Subjects. International Journal of Molecular Sciences. 2013; 14(2):2739-2752. https://doi.org/10.3390/ijms14022739
Chicago/Turabian StylePishva, Seyyed Reza, Ramachandran Vasudevan, Ali Etemad, Farzad Heidari, Makanko Komara, Patimah Ismail, Fauziah Othman, Abdollah Karimi, and Mohammad Reza Sabri. 2013. "Analysis of MTHFR and MTRR Gene Polymorphisms in Iranian Ventricular Septal Defect Subjects" International Journal of Molecular Sciences 14, no. 2: 2739-2752. https://doi.org/10.3390/ijms14022739