The Possible Physical Barrier and Coastal Dispersal Strategy for Japanese Grenadier Anchovy, Coilia nasus in the East China Sea and Yellow Sea: Evidence from AFLP Markers
Abstract
:1. Introduction
2. Results and Discussion
2.1. Results
Populations | Number of Individuals | Date of Collection | Number of Loci | Number of Polymorphic Loci | Proportion of Polymorphic Loci | Nei’s Genetic Diversity |
---|---|---|---|---|---|---|
Coilia mystus | 12 | May 2005 | 286 | 193 | 67.48% | 0.1435 |
Zhenjiang (ZJ) | 20 | July 2004 | 282 | 143 | 50.71% | 0.1016 |
Nantong (NT) | 17 | October 2004 | 279 | 125 | 44.80% | 0.0808 |
Dongying (DY) | 20 | May 2004 | 272 | 116 | 42.65% | 0.0750 |
Kashima (KA) | 12 | March 2003 | 230 | 69 | 30.00% | 0.0554 |
Yanagawa (YA) | 9 | March 2003 | 231 | 73 | 31.60% | 0.0584 |
Total | 93 | – | 371 | 310 | 85.36% | – |
Primer Combinations | E-AGA/M-CAG | E-AGA/M-CTA | E-AGG/M-CAC | E-ACC/M-CAG | E-AGT/M-CTT | Total |
---|---|---|---|---|---|---|
Number of loci | 105 | 87 | 72 | 42 | 65 | 371 |
Number of polymorphic loci | 87 | 75 | 59 | 37 | 52 | 310 |
Proportion of polymorphic loci | 85.71% | 86.20% | 81.94% | 88.10% | 80.00% | 83.56% |
Source of Variation | Variance Components | Percentage of Variance | F/φ-Statistics | p |
---|---|---|---|---|
One gene pool | ||||
Among populations | 3.6003 | 17.77 | 0.1777 | 0.00 |
Within populations | 16.6565 | 82.23 | ||
Two gene pools (DY, NT, ZJ) (Ka, Ya) | ||||
Between groups | 3.2468 | 14.84 | 0.1484 | 0.00 |
Among populations within groups | 1.9707 | 9.01 | 0.1058 | 0.00 |
Within populations | 16.6565 | 76.15 | 0.2385 | 0.00 |
Populations | Coilia mystus | Zhenjiang | Nantong | Dongying | Kashima | Yanagawa |
---|---|---|---|---|---|---|
Coilia mystus | – | 0.6406 | 0.6360 | 0.6404 | 0.6616 | 0.6550 |
Zhenjiang | 0.6715 | – | 0.1102 | 0.1148 | 0.1337 | 0.1246 |
Nantong | 0.6880 | 0.0746 | – | 0.0920 | 0.1141 | 0.1002 |
Dongying | 0.6946 | 0.1660 | 0.0789 | – | 0.0962 | 0.0841 |
Kashima | 0.7136 | 0.2580 | 0.2203 | 0.2333 | – | 0.0551 |
Yanagawa | 0.7093 | 0.2749 | 0.2302 | 0.2717 | 0.0732 * | – |
2.2. Discussion
3. Materials & Methods
3.1. Sample Collection
3.2. AFLP Analysis
Primer | Sequence |
---|---|
Adapters | |
EcoRI-adapter | 5'-CTCGTAGACTGCGTACC-3' |
5'-AATTGGTACGCAGTCTAC-3' | |
MseI-adapter | 5'-GACGTGAGTCCTGAG-3' |
5'-TACTCAGGACTCAT-3' | |
Pre-Amplification Primer | |
EcoRI | 5'-GACTGCGTACCAATTC-3' |
MseI | 5'-GATGAGTCCTGAGTAA-3' |
Selective Amplification Primer | |
E-AGA/M-CAG | 5'-GACTGCGTACCAATTCAGA-3' |
5'-GATGAGTCCTGAGTAACAG-3' | |
E-AGA/M-CTA | 5'-GACTGCGTACCAATTCAGA-3' |
5'-GATGAGTCCTGAGTAACTA-3' | |
E-AGG/M-CAC | 5'-GACTGCGTACCAATTCAGG-3' |
5'-GATGAGTCCTGAGTAACAC-3' | |
E-ACC/M-CAG | 5'-GACTGCGTACCAATTCACC-3' |
5'-GATGAGTCCTGAGTAACAG-3' | |
E-AGT/M-CTT | 5'-GACTGCGTACCAATTCAGT-3' |
5'-GATGAGTCCTGAGTAACTT-3' |
3.3. Data Analysis
4. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Han, Z.-Q.; Han, G.; Wang, Z.-Y.; Gao, T.-X. The Possible Physical Barrier and Coastal Dispersal Strategy for Japanese Grenadier Anchovy, Coilia nasus in the East China Sea and Yellow Sea: Evidence from AFLP Markers. Int. J. Mol. Sci. 2015, 16, 3283-3297. https://doi.org/10.3390/ijms16023283
Han Z-Q, Han G, Wang Z-Y, Gao T-X. The Possible Physical Barrier and Coastal Dispersal Strategy for Japanese Grenadier Anchovy, Coilia nasus in the East China Sea and Yellow Sea: Evidence from AFLP Markers. International Journal of Molecular Sciences. 2015; 16(2):3283-3297. https://doi.org/10.3390/ijms16023283
Chicago/Turabian StyleHan, Zhi-Qiang, Gang Han, Zhi-Yong Wang, and Tian-Xiang Gao. 2015. "The Possible Physical Barrier and Coastal Dispersal Strategy for Japanese Grenadier Anchovy, Coilia nasus in the East China Sea and Yellow Sea: Evidence from AFLP Markers" International Journal of Molecular Sciences 16, no. 2: 3283-3297. https://doi.org/10.3390/ijms16023283