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Article

UPLC-MS/MS-Based Profiling of Eicosanoids in RAW264.7 Cells Treated with Lipopolysaccharide

by
Jae Won Lee
1,†,
Hyuck Jun Mok
2,†,
Dae-Young Lee
1,
Seung Cheol Park
2,
Myeong Soon Ban
1,
Jehun Choi
1,
Chun Geon Park
1,
Young-Sup Ahn
1,
Kwang Pyo Kim
2,* and
Hyung Don Kim
1,3,*
1
Department of Herbal Crop Research, National Institute of Horticultural and Herbal Science, RDA, Eumseong 369-873, Korea
2
Department of Applied Chemistry, The Institute of Natural Science, College of Applied Science, Kyung Hee University, Yongin 446-701, Korea
3
Department of Biochemistry, School of Life Sciences, Chungbuk National University, Cheongju 361-763, Korea
*
Authors to whom correspondence should be addressed.
†
These authors contributed equally to this work.
Int. J. Mol. Sci. 2016, 17(4), 508; https://doi.org/10.3390/ijms17040508
Submission received: 3 March 2016 / Revised: 28 March 2016 / Accepted: 30 March 2016 / Published: 6 April 2016
(This article belongs to the Section Biochemistry)
Browse Figures
Versions Notes

Abstract

:
While both the pro- and anti-inflammatory effects of several eicosanoids have been widely studied, the degree of inflammation in cells that results from various eicosanoids has yet to be comprehensively studied. The objective of this study was to assess the effect of lipopolysaccharide (LPS) treatment on eicosanoid content in RAW264.7 cells. An Ultra performance liquid chromatography coupled to tandem mass spectrometry (UPLC-MS/MS)-based profiling method was used to analyze the eicosanoid contents of RAW264.7 cells treated with different LPS concentrations. The profiling data were subjected to statistical analyses, such as principal component analysis (PCA) and hierarchical clustering analysis. LPS treatment increased nitric oxide production and secretion of pro-inflammatory cytokines, such as tumor necrosis factor-α and interleukin-6, in a concentration-dependent manner. In total, 79 eicosanoids were identified in the cells. RAW264.7 cells treated with different LPS concentrations were well differentiated in the PCA score plot. A heatmap was used to identify the eicosanoids that were up- or down-regulated according to the degree of inflammation and LPS concentration. Thirty-nine eicosanoids were upregulated and seven were down-regulated by LPS treatment in a concentration-dependent manner. Our novel UPLC-MS/MS technique can profile eicosanoids, and can evaluate the correlations between inflammation and eicosanoid metabolism.

Graphical Abstract

1. Introduction

Eicosanoids, such as prostaglandins (PGs), leukotrienes (LTs), and a number of hydroxyl and epoxy compounds (Figure 1), are bioactive lipid mediators that play vital roles in physiological and pathophysiological conditions [1,2]. They are key mediators and regulators of inflammation and exert both pro- and anti-inflammatory effects [3,4,5]. Inflammation, a mechanism to protect the host from harmful stimuli, is implicated in the pathogenesis of a number of diseases, including cardiovascular disease, diabetes, allergic diseases, obesity, and cancer [6,7,8,9,10]. Thus, many studies have attempted to identify biomarkers of inflammation, for which the eicosanoids have been targeted as critical metabolites [11,12]. The levels of eicosanoids in biological systems have been assessed to investigate their roles in cell function and pathophysiological events [13,14].
Enzyme-linked immunosorbent assays (ELISAs) are widely used to quantify eicosanoids [15,16]. However, these assays are limited by the lack of commercially available antibodies and their non-specificity. They are also insufficient for multiplex analyses because a large quantity of sample is required to quantify multiple target compounds. For the simultaneous analysis of diverse eicosanoids in a mixture, chromatographic separation using gas chromatography (GC) or liquid chromatography (LC) has been used [17,18]. However, LC is more applicable to analyze various eicosanoids than GC, which requires derivatization to increase the volatility and thermal stability of compounds. Furthermore, ultraviolet (UV) detection lacks sensitivity and is applicable only to a limited number of UV-light-absorbing analytes [19]. Thus, LC coupled to mass spectrometry (MS)-based techniques have been recently used to profile eicosanoids [20,21,22,23]. Ultra-performance LC (UPLC) with a small-particle-size column provides fast and effective separation of various molecules [24]. Multiple reaction monitoring (MRM) based on tandem MS (MS/MS) is also effective for the sensitive and selective profiling of each molecular species [25]. Finally, UPLC-MS/MS is a good tool for the comprehensive profiling of eicosanoids. Such characterization of eicosanoids may provide insight into their correlations with inflammatory conditions.
Macrophages, which are the major source of various lipid mediators, respond to a variety of stimuli by producing various eicosanoids [26,27]. The RAW264.7 murine macrophage cell line has been used in numerous studies as a model of primary macrophages. Lipopolysaccharide (LPS) induces cytokine production and the acute-phase response, and so has been used extensively in mechanistic studies of inflammation [28,29]. In this study, UPLC-MS/MS was used to profile the eicosanoid content of RAW264.7 cells treated with various concentrations of LPS. The degree of cellular inflammation may differ depending on LPS concentration. The objective of this study was to perform a comprehensive profiling of eicosanoids known to be related to inflammation as well as other less known species in inflammatory cells. The characterization of eicosanoids altered in RAW264.7 cells by different levels of inflammation may help elucidate the correlation between inflammation and eicosanoid metabolism.

2. Results

2.1. Effect of Lipopolysaccharide (LPS) on RAW264.7 Cells

LPS-stimulated RAW264.7 cells were used to elucidate the correlation between inflammation and eicosanoid metabolism. The cells were treated with 0, 1, 10, 100, 1000 ng/mL LPS for 18 h, and monitored under optical microscopy. LPS is known to induce the differentiation of RAW264.7 cells into dendritic-like cells [30,31]. We observed that LPS-activated RAW264.7 cells had a differentiated form with accelerated spreading and forming pseudopodia (Figure 2). Next, the supernatants were subjected to quantification of nitric oxide (NO) and pro-inflammatory cytokine levels. LPS-induced NO production in RAW264.7 cells changed in a concentration-dependent manner (Figure 3A). NO production by cells treated with 1000 ng/mL LPS was 10-fold greater than that of the control. LPS also induced the secretion of pro-inflammatory cytokines, such as tumor necrosis factor-α (TNF-α) and interleukin-6 (IL-6), by RAW264.7 cells in a concentration-dependent fashion (Figure 3B,C). These results showed that LPS activated inflammatory signaling pathways.

2.2. Profiling of Eicosanoids by Ultra Performance Liquid Chromatography Coupled to Tandem Mass Spectrometry (UPLC-MS/MS)

To profile the eicosanoid levels in RAW264.7 cells, we established a multiple-reaction monitoring (MRM) method based on UPLC-MS/MS. First, several standards, 5-hydroxy-eicosatetraenoic acid-d8 (5(S)HETE-d8), 14,15-epoxy-eicosatrienoic acid-d11 (14,15EET-d11), leukotriene B4-d4 (LTB4-d4), prostaglandin E2-d4 (PGE2-d4), prostaglandin D2-d4 (PGD2-d4), and arachidonic acid-d8 (AA-d8), were used to optimize the analytical conditions. The adduct ion of each eicosanoid was confirmed by MS scans and were detected primarily as [M ‒ H]− ions by electropray ionization (ESI) in the negative-ion mode. Previously reported MRM transitions for eicosanoids were employed in the current study [32]. Furthermore, source conditions (source temperature (Temp), nebulizer gas (GS1), heater gas (GS2)) and the compound parameters (collision energy (CE) and declustering potential (DP)) of the mass spectrometer were optimized using eicosanoid standards. Table 1 shows the MRM transitions (precursor m/z (Q1) > product m/z (Q3)), DP, and CE of the eicosanoid standards. Use of a UPLC system with a small-particle-size column enabled effective separation of these standards within 25 min at a flow rate of 0.5 mL/min (Figure 4).
Next, the performance of eicosanoid analyses based on MRM was validated (Table 2). Each eicosanoid standard was analyzed six times and the relative standard deviations (RSDs) (%) were calculated. The RSDs (%) of the relative RTs and the relative peak areas were less than 0.3% and 8%, respectively. This method showed a high degree of reproducibility and the correlation coefficient (R2) for each eicosanoid analysis was at least 0.9959, indicating a high degree of reliability. The limit of detection (LOD) and the limit of quantification (LOQ) of the eicosanoid standards are also shown. With the exception of 14,15-EET-d11, the LC/MS method exhibited sufficient sensitivity for the standards. Thus, in the analysis of biological samples, a higher concentration of 14,15-EET-d11 was required for its use as an internal standard (IS).

2.3. Quantification of Eicosanoids in LPS-Treated RAW264.7 Cells

The above UPLC/MS/MS-based method was used to quantify eicosanoids in RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS. Assays were performed in triplicate for each LPS concentration. Eicosanoids were extracted using 10% methanol. In this study, a total of 150 MRM transitions were used to profile eicosanoids. A total of 79 eicosanoids were identified in RAW264.7 cells (Table 3). To ensure reliable quantification, we used deuterated compounds, including 5(S)-HETE-d8, 14,15-EET-d11, AA-d8, LTB4-d4, and PGE2-d4, as ISs to normalize the data. The normalized data (peak areas of compounds/peak area of IS) were subjected to statistical analyses.
First, we applied principal component analysis (PCA) [33,34] to differentiate the RAW264.7 cells treated with various LPS concentrations. This resulted in effective separation in the corresponding PCA score plot (Figure 5). Each point represents an individual sample and the scatter of samples indicates similarities or differences in eicosanoid composition. Samples treated with 0, 1, and 10 ng/mL LPS were scattered on the lower side of the plot and those treated with 100 and 1000 ng/mL LPS were scattered on the upper side. The degree of inflammation increased with increasing LPS concentration. This demonstrated that eicosanoid contents differ depending on the degree of inflammation.
Second, changes in the levels of 79 eicosanoids can be described in a heatmap (Figure 6). This hierarchical clustering enabled effective differentiation of the five groups. Several of the 79 eicosanoid species were upregulated by treatments with 100 and 1000 ng/mL LPS. In contrast, the levels of other eicosanoids decreased with increasing LPS concentration. The levels of still other species were not correlated with LPS concentration. Therefore, up- and down-regulation of eicosanoids were associated with LPS-induced inflammation.

3. Discussion

To evaluate altered eicosanoid metabolism in RAW264.7 cells, we focused on the pathway of eicosanoid synthesis from AA (Figure 7). Several PGs, such as PGD2, PGE2, and PGF2α, are synthesized from AA by cyclooxygenase (COX)-1 and COX-2. Furthermore, 15-HETE is synthesized from AA by 15-lipoxygenase (LOX). In addition, 12-LOX and 5-LOX also synthesize 12-HETE and 5-HETE, respectively, from AA. Our results showed that AA was down-regulated following treatment with high concentrations of LPS. This indicated that AA was used as the substrate to synthesize several eicosanoids. PGE2, which plays a pro-inflammatory role [35,36], was upregulated following treatment with high concentrations of LPS. In contrast, two other PGs (PGE2 and PGF2α) and 15-HETE were upregulated. In addition, 12-HETE was upregulated slightly and 5-HETE was down-regulated following treatments with high concentrations of LPS. Therefore, COX-1, COX-2, and 15-LOX were highly activated by LPS-induced inflammation, whereas 12-LOX was only slightly activated and 5-LOX was suppressed.
Many previous studies have reported the utility of various eicosanoid species as biomarkers for diseases and pathophysiological conditions [11,37,38,39]. For example, the endogenous levels of AA, PGE2, and 12-HETE were significantly altered in cancerous mucosae [40]. This indicates that inflammation is correlated with tumorigenesis. Rago et al. [41] also reported the quantities of several eicosanoids in human plasma to develop biomarkers to distinguish three groups: healthy individuals, hypertensive patients, and severe atherosclerotic patients. The results showed that lower levels of 8-HETE, LTB4, 9-HODE, and 13-HODE are potential biomarkers for severe heart disease. Eicosanoid metabolism may differ depending on biological samples and pathophysiological events. However, the detailed metabolism of major and minor eicosanoids in human diseases that involve inflammation has yet to be studied.
To characterize eicosanoid metabolism in inflammatory cells, comprehensive profiling of various eicosanoids is required. In this study, we evaluated changes in the levels of not only known eicosanoids related to inflammation but also other, less well-known species. The following 39 eicosanoids were upregulated following treatment with high concentrations of LPS: (1) eicosanoids derived from AA: 9-HETE, 11-HETE, 12-HETE, 15-HETE, 11,12-DHET, 12-HHT, PGA2, PGD2, PGE2, PGF2α, dihomo PGD2, dihomo PGF2α, dihomo PGJ2, dihomo 15d PGJ2, 15d-PGA2, 15d-PGD2, 11β dhk PGF2α, dhk PGD2, dhk PGE2, PGK2, 15k PGF2, and LXB4; (2) eicosanoids derived from linoleic acid: 9-HODE, and 13-HODE; (3) eicosanoids derived from eicosapentaenoic acid: 9-HEPE, 11-HEPE, 15-HEPE, 15-oxoEDE, PGD3, and PGE3; (4) eicosanoids derived from docohexaenoic acid: 11-HDoHE, 13-HDoHE, 16-HDoHE, and 17-HDoHE; (5) eicosanoids derived from gamma-linoleic acid: 13-HOTre-g; and (6) eicosanoids derived from dihomo-gamma-linoleic acid: 15-HETrE, PGD1, PGE1, and PGF1α. The following seven eicosanoids were down-regulated following treatments with high concentrations of LPS: (1) eicosanoids derived from AA: 5-HETE, 5,6-DHET, 5,6-EET, and 11,12-EET; (2) eicosanoids derived from eicosapentaenoic acid: 5-HEPE; and (3) eicosanoids derived from dihomo-gamma-linoleic acid: 5-HETrE. Other eicosanoid species were not influenced by LPA treatment in a concentration-dependent manner.
In conclusion, a profiling method based on UPLC-MS/MS was used to characterize the effect of LPS treatment on eicosanoid metabolism in RAW264.7 cells. The degree of inflammation increased with increasing LPS concentration. A total of 79 eicosanoids were identified in RAW264.7 cells. PCA and heatmap generation were used to differentiate RAW264.7 cells treated with different concentrations of LPS. The five groups were well separated in the PCA score plot, and the heatmap was used to identify the up- or downregulation of eicosanoids according to LPS concentration. To our knowledge, this study is the first attempt to assess the levels of cellular eicosanoids altered by the degree of inflammation. A total of 39 eicosanoids were upregulated, and seven were down-regulated by LPS treatment in a concentration-dependent manner. Our novel UPLC-MS/MS technique has the potential for eicosanoid profiling and evaluating correlations between inflammation and eicosanoid metabolism. The eicosanoids up- or down-regulated by LPS can be applied as typical biomarkers for inflammation. In the future, the levels of inflammation-related eicosanoids in biological samples are needed to estimate their roles in cell function and pathophysiological events.

4. Materials and Methods

4.1. Reagents

HPLC-grade water, methanol, acetonitrile, and isopropyl alcohol were purchased from J.T. Baker (Avantor Performance Material, Inc., Center Valley, PA, USA). Acetic acid and ammonium acetate were obtained from Sigma-Aldrich (St. Louis, MO, USA). The eicosanoid standards were as follows: 14,15-EET-d11, 5(S)HETE-d8, LTB4-d4, PGE2-d4, PGD2-d4, and AA-d8 (Cayman Chemical, Ann Arbor, MI, USA). A Strata-x 33-µm polymerized solid reverse-phase extraction column (cat # 8B-S100-UBJ) was purchased from Phenomenex (Torrance, CA, USA). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), penicillin-streptomycin, and trypsin-ethylenediaminetetraacetic acid (EDTA) were purchased from HyClone Laboratories Inc. (Logan, UT, USA). Escherichia coli LPS and Griess reagent were obtained from Sigma Chemical Co. (St Louis, MO, USA).

4.2. Cell Culture and LPS Treatment

Murine macrophage RAW264.7 cells (KCLB 40071; Korean Cell Line Bank, Seoul, Korea) were cultured in DMEM containing 10% heat-inactivated FBS, 100 U/mL penicillin, and 100 µg/mL streptomycin in a humidified atmosphere with 5% CO2 at 37 °C. Cells were seeded in a 100-mm Petri dish, cultured for 24 h, and incubated for a further 18 h after treatment with 100 µL LPS (0, 1, 10, 100, and 1000 ng/mL). Cell pellets were collected from each culture dish and the cells were enumerated using a hemocytometer. Finally, 1 × 107 cells were used in the analyses.

4.3. Nitric Oxide (NO) and Enzyme-Linked Immunosorbent Assays (ELISAs) Analyses

NO concentrations in the culture supernatants were determined using a spectrophotometric assay based on the Griess reaction. A calibration curve was constructed using known concentrations (0–100 µM) of sodium nitrite. Levels of proinflammatory cytokines such as TNF-α and IL-6 were analyzed using commercial ELISA kits (BD Biosciences, San Diego, CA, USA) according to the manufacturer’s instructions.

4.4. Sample Preparation

A simple solid-phase extraction method was applied for the extraction of eicosanoids [25]. Cells were resuspended in 1 mL of 10% methanol in water (v/v) and sonicated for 5 min. Samples were then spiked with 10 ng of deuterated internal standards. Eicosanoids were extracted using Strata-x 33-µm polymerized solid reverse-phase extraction columns. Briefly, the columns were activated with 3.5 mL of 100% methanol followed by 3.5 mL of water for equilibration. After loading the samples, the columns were washed with 3.5 mL of 10% methanol in water to remove non-specific-binding metabolites. Eicosanoids were eluted into 1 mL methanol. The eluted samples were dried using a Speed-Vac concentrator (Labconco, Kansas City, MO, USA) and resuspended in 90 µL of Solvent A, as described below. The samples were stored at −80 °C until analysis.

4.5. UPLC-MS/MS Conditions

The UPLC analyses were performed on a Waters ACQUITY UPLC instrument (Waters Corp., Milford, MA, USA). The temperature of the column oven and autosampler were set at 40 and 4 °C, respectively. An Acquity BEH300 C18 column (2.1 × 150 mm ID; 1.7 µm; Waters Corp.) was used for the separation of eicosanoids. Solvent A consisted of water/acetonitrile/acetic acid (70:30:0.02; v/v/v) and solvent B of acetonitrile/isopropyl alcohol (50:50, v/v). The gradient elution program was as follows: 0–1 min, B 0%; 1–3 min, B 0%–25%; 3–11 min, B 25%–45%; 11–13 min, B 45%–60%; 13–18 min, B 60%–75%; 18–18.5 min, B 75%–90%; 18.5–20 min, B 90%; and 20–21 min, B 90%–0%. The column was equilibrated with 0% Solvent B for 4 min prior to analysis of the next sample. The total run time was 25 min for each analysis. The flow rate was 0.5 mL/min and the injection volume was 40 µL for each run.
For the MS analyses, an ABI/Sciex (Foster City, CA, USA) 5500 QTRAP hybrid, triple quadrupole, linear ion trap mass spectrometer equipped with a Turbo V ion source, together with the Analyst 1.5.1 software package (ABI/Sciex, Foster City, CA, USA), was used. Ultra-pure nitrogen gas was used as the collision gas for eicosanoids. The typical operating source conditions for the analysis of eicosanoids in negative ion ESI mode were optimized using deuterated standards as follows: curtain gas (CUR) = 10 psi, GS1 = 30 psi, GS2 = 30 psi, ionspray voltage (IS) = −4500 V, collision gas setting (CAD) = high, Temp = 525 °C, Ihe = on, entrance potential (EP) = −10 V, and collision cell exit potential (CXP) = −10 V.

4.6. Validation Study

External standard curves were established from the analysis of mixed eicosanoid standards at 16 different concentrations (0.1, 0.3, 0.6, 1, 3, 6, 10, 30, 60, 100, 300, 600, 1000, 3000, 6000, and 10,000 pg). In the case of 14,15 EET-d11, seven different concentrations (1000, 3000, 6000, 10,000, 30,000, 60,000, and 100,000 pg) were applied. The LOD, LOQ, linear ranges, and correlation (R2) values were determined by the external standard curve. The RSDs (%) of the relative RTs and the relative peak areas were estimated after six replicate analyses of 3000 pg of each standard.

4.7. Data Processing and Statistical Analysis

LC-MS data were obtained using the Analyst 1.5.1 software package (ABI/Sciex, Foster City, CA, USA). Eicosanoid peaks were assigned by comparisons of retention times with those of the internal standards. The Skyline software package (MacCoss Laboratory, University of Washington, Seattle, WA, USA) was used as an in-house database to determine the peak area of each assigned lipid from replicate raw data. The extracted peak areas of lipid peaks were normalized to the appropriate internal standard [42]. Hierarchical clustering of the quantified eicosanoids and PCA analyses was performed on the MetaboAnalyst web site [43].

Acknowledgments

This work was carried out with the support of the “Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01135001)” Rural Development Administration, Korea.

Author Contributions

Jae Won Lee and Hyung Don Kim conceived and designed the experiments; Hyuck Jun Mok, Seung Chul Park, Myeong Soon Ban, and Jehun Choi performed the experiments; Jae Won Lee, Hyuck Jun Mok, and Seung Chul Park analyzed the data; Dae-Young Lee, Chun Geon Park, Young-Sup Ahn, and Kwang Pyo Kim contributed the reagents/materials/analysis tools; Jae Won Lee, Hyung Don Kim, and Hyuck Jun Mok wrote the paper.

Conflicts of Interest

The authors declare no conflicts of interest. The founding sponsors had no role in the design of the study; collection, analyses, or interpretation of the data; writing of the manuscript; or decision to publish the results.

Abbreviations

LPSLipopolysaccharide
UPLCUltra performance liquid chromatography
MSMass spectrometry
PGProstaglandin
LTLeukotriene
ELISAEnzyme-linked immunosorbent assays
NONitric oxide
TNF-αTumor necrosis factor-α
IL-6Interleukin-6
MRMMultiple reaction monitoring
CECollision energy
DPDeclustering potential
RSDRelative standard deviation
LODThe limit of detection
LOQThe limit of quantification
ISInternal standard
PCAPrincipal component analysis
EDTAEthylenediaminetetraacetic acid

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Figure 1. Chemical structures of typical eicosanoids: prostaglandin E2 (PGE2), leukotriene B4 (LTB4), 5-hydroxy-eicosatetraenoic acid (5(S)-HETE), and 5,6-epoxy-eicosatrienoic acid (5,6 EET).
Figure 1. Chemical structures of typical eicosanoids: prostaglandin E2 (PGE2), leukotriene B4 (LTB4), 5-hydroxy-eicosatetraenoic acid (5(S)-HETE), and 5,6-epoxy-eicosatrienoic acid (5,6 EET).
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Figure 2. Morphological changes in RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL lipopolysaccharide (LPS). The morphology of RAW 264.7 cells was visualized by optical microscopy (400×).
Figure 2. Morphological changes in RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL lipopolysaccharide (LPS). The morphology of RAW 264.7 cells was visualized by optical microscopy (400×).
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Figure 3. (A) nitric oxide (NO); (B) tumor necrosis factor-α (TNF-α); and (C) interleukin-6 (IL-6) production by RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS. *** p value < 0.001.
Figure 3. (A) nitric oxide (NO); (B) tumor necrosis factor-α (TNF-α); and (C) interleukin-6 (IL-6) production by RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS. *** p value < 0.001.
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Figure 4. Merged multiple reaction monitoring data of six standards—PGE2-d4, PGD2-d4, LTB4-d4, 14,15-EET-d11, 5(S)-HETE-d8, and AA-d8.
Figure 4. Merged multiple reaction monitoring data of six standards—PGE2-d4, PGD2-d4, LTB4-d4, 14,15-EET-d11, 5(S)-HETE-d8, and AA-d8.
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Figure 5. Principal component analysis (PCA) score plot of RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS.
Figure 5. Principal component analysis (PCA) score plot of RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS.
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Figure 6. Hierarchical clustering of 79 eicosanoid datasets from RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS.
Figure 6. Hierarchical clustering of 79 eicosanoid datasets from RAW264.7 cells treated with 0, 1, 10, 100, and 1000 ng/mL LPS.
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Figure 7. The eicosanoid synthesis pathway from arachidonic acid (AA) and eicosanoid levels in RAW264.7 cells as a function of LPS concentration (0, 1, 10, 100, and 1000 ng/mL). COX, cyclooxygenase; LOX, lipoxygenase; PG, prostaglandin; HETE, hydroxyeicosatetraenoic acid.
Figure 7. The eicosanoid synthesis pathway from arachidonic acid (AA) and eicosanoid levels in RAW264.7 cells as a function of LPS concentration (0, 1, 10, 100, and 1000 ng/mL). COX, cyclooxygenase; LOX, lipoxygenase; PG, prostaglandin; HETE, hydroxyeicosatetraenoic acid.
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Table
Table 1. Optimized multiple-reaction monitoring (MRM) conditions for eicosanoid standards.
Table 1. Optimized multiple-reaction monitoring (MRM) conditions for eicosanoid standards.
CompoundsAbbreviationIon ModeMRM TransitionsDPCE
Q1Q3
Prostaglandin E2-d4PGE2-d4Negative355275−50−25
Prostaglandin D2-d4PGD2-d4Negative355275−50−25
Leukotriene B4-d4LTB4-d4Negative339197−70−22
14,15 Epoxy-eicosatrienoic acid-d1114,15 EET-d11Negative330202−50−15
5-Hydroxy-eicosatetraenoic acid-d85(S)-HETE-d8Negative327116−50−20
Arachidonic acid-d8AA-d8Negative311267−80−20
Q1, precursor m/z; Q3, product m/z; DP, Declustering potential; CE, Collision energy.
Table
Table 2. Validation of the eicosanoid profiling method based on UPLC-MS/MS and the LOD and LOQ of each compound.
Table 2. Validation of the eicosanoid profiling method based on UPLC-MS/MS and the LOD and LOQ of each compound.
EicosanoidsRT (min)RSD (n = 6) (%)Correlation (R2)Linear Range (pg)LOD (pg)LOQ (pg)
RTPeak Area
PGE2-d48.060.252.850.997830–10,000330
PGD2-d48.4304.440.998230–10,000330
LTB4-d412.770.205.390.9969100–10,00060100
14,15 EET-d1117.7006.080.996410,000–100,000300010,000
5(S)-HETE-d817.8505.010.997230–10,000630
AA-d821.5307.840.99593–60000.13
UPLC-MS/MS, Ultra performance liquid chromatography coupled to tandem mass spectrometry; LOD, The limit of detection; LOQ, The limit of quantification; RT, Retention time; RSD, Relative standard deviation.
Table
Table 3. Eicosanoids identified in RAW264.7 cells.
Table 3. Eicosanoids identified in RAW264.7 cells.
No.Compound NameAbbreviationMRM TransitionsDPCERT (min)ISAlteration by LPS Treatment
Q1Q3
112S-hydroxy-heptadecatrienoic acid12-HHT279163−30−3014.35(S)HETE-d8Up
213-hydroxy-g-octadecatrienoic acid13-HOTre-g293193−70−2015.55(S)HETE-d8Up
39-hydroxy-octadecadienoic acid9-HODE295171−60−2516.65(S)HETE-d8Up
413-hydroxy-octadecadienoic acid13-HODE295195−60−2516.35(S)HETE-d8–
59,10-hydroxy-octadecadienoic acid9,10-diHOME313201−60−3014.25(S)HETE-d8–
612,13-hydroxy-octadecadienoic acid12,13-diHOME313183−60−3013.55(S)HETE-d8–
79-hydroxy-eicosapentaenoic acid9-HEPE317149−75−2015.75(S)HETE-d8Up
85-hydroxy-eicosapentaenoic acid5-HEPE317115−40−1716.65(S)HETE-d8Down
915-hydroxy-eicosapentaenoic acid15-HEPE317219−60−2015.55(S)HETE-d8Up
108-hydroxy-eicosapentaenoic acid8-HEPE317127−70−2515.55(S)HETE-d8–
1111-hydroxy-eicosapentaenoic acid11-HEPE317121−70−2415.75(S)HETE-d8Up
1212-hydroxy-eicosapentaenoic acid12-HEPE317179−70−2015.95(S)HETE-d8–
1318-hydroxy-eicosapentaenoic acid18-HEPE317215−60−2015.15(S)HETE-d8–
1411-hydroxy-eicosatetraenoic acid11-HETE319167−60−2017.15(S)HETE-d8Up
159-hydroxy-eicosatetraenoic acid9-HETE319151−60−2017.05(S)HETE-d8Up
165-hydroxy-eicosatetraenoic acid5-HETE319115−60−2017.95(S)HETE-d8Down
178-hydroxy-eicosatetraenoic acid8-HETE319155−60−2017.35(S)HETE-d8–
1815-hydroxy-eicosatetraenoic acid15-HETE319219−50−1516.75(S)HETE-d8Up
1912-hydroxy-eicosatetraenoic acid12-HETE319179−60−2017.35(S)HETE-d8Up
2018-hydroxy-eicosatetraenoic acid18-HETE319261−80−2515.95(S)HETE-d8–
2117-hydroxy-eicosatetraenoic acid17-HETE319247−80−2515.95(S)HETE-d8–
2216-hydroxy-eicosatetraenoic acid16-HETE319189−80−2516.05(S)HETE-d8–
235-hydroxy-eicosatrienoic acid5-HETrE321115−70−1919.15(S)HETE-d8Down
2415-hydroxy-eicosatrienoic acid15-HETrE321221−70−2117.45(S)HETE-d8Up
255,6-dihydroxy-eicosatrienoic acid5,6-DHET337145−75−2516.55(S)HETE-d8Down
268,9-dihydroxy-eicosatrienoic acid8,9-DHET337127−60−3015.55(S)HETE-d8–
2711,12-dihydroxy-eicosatrienoic acid11,12-DHET337167−60−2515.85(S)HETE-d8Up
288-hydroxy-docosahexaenoic acid8-HDoHE343109−70−2017.55(S)HETE-d8–
297-hydroxy-docosahexaenoic acid7-HDoHE343141−60−1817.35(S)HETE-d8–
304-hydroxy-docosahexaenoic acid4-HDoHE343101−70−1718.25(S)HETE-d8–
3110-hydroxy-docosahexaenoic acid10-HDoHE343181−60−1716.95(S)HETE-d8–
3211-hydroxy-docosahexaenoic acid11-HDoHE343149−60−1917.05(S)HETE-d8Up
3313-hydroxy-docosahexaenoic acid13-HDoHE343221−60−1716.75(S)HETE-d8Up
3416-hydroxy-docosahexaenoic acid16-HDoHE343233−75−1916.55(S)HETE-d8Up
3520-hydroxy-docosahexaenoic acid20-HDoHE343241−60−2016.35(S)HETE-d8–
3617-hydroxy-docosahexaenoic acid17-HDoHE343245−60−2016.55(S)HETE-d8Up
3714-hydroxy-docosahexaenoic acid14-HDoHE343205−60−1816.75(S)HETE-d8–
38Arachidonic acidAA303259−80−2021.6AA-d8Down
39Eicosapentaenoic acidEPA301257−65−1520.4AA-d8–
40Adrenic acidADA331287−80−2022.3AA-d8–
41Dohexacosaenoic acidDHA327283−95−2021.3AA-d8–
4213-oxo-octadecadienoic acid13-oxoODE293113−70−3016.614,15 EET-d11–
439,10-epoxy-octadecenoic acid9,10-EpOME295171−60−2518.414,15 EET-d11–
4412,13-epoxy-octadecenoic acid12,13-EpOME295195−60−2518.114,15 EET-d11–
455-5-oxo-eicosatetraenoic acid5-oxoETE317203−40−2518.314,15 EET-d11–
4615-5-oxo-eicosatetraenoic acid15-oxoETE317113−40−2516.714,15 EET-d11–
4711,12-epoxy-eicosatrienoic acid11,12-EET319167−60−2018.614,15 EET-d11Down
4814,15-epoxy-eicosatrienoic acid14,15-EET319219−50−1518.114,15 EET-d11–
495,6-epoxy-eicosatrienoic acid5,6-EET319191−30−2018.814,15 EET-d11Down
5015-oxo-eicosadienoic acid15-oxoEDE321113−100−3218.114,15 EET-d11Up
51Hepoxilin B3HXB3335183−40−2015.514,15 EET-d11–
5219,20-epoxy Docosapentaenoic acid19,20-EpDPE343241−60−2017.614,15 EET-d11–
53Lipoxin B4LXB4351221−80−258.4LTB4-d4Up
5420-carboxy-Leukotriene B420cooh LTB4365195−60−256.4LTB4-d4–
5515-deoxy-Prostaglandin A2 or 15-deoxy-Δ12,14-PGJ215d-PGA2 or 15d-PGJ2315271−50−1515.2PGE2-d4Up
56Tetranor-Prostanglin F Metabolitetetranor-PGFM329293−40−253.1PGE2-d4–
57Prostaglandin A2 or Prostaglandin B2 or Prostaglandin J2PGA2 or PGB2 or PGJ2333271−30−2010.5PGE2-d4Up
5815-deoxy-Δ12,14-PGD215d-PGD2333271−30−2012.8PGE2-d4Up
59Prostaglandin D3PGD3349269−55−257.4PGE2-d4Up
60Prostaglandin E3PGE3349269−55−257.1PGE2-d4Up
6115-keto-Prostaglandin E215k PGE2349113−35−308.3PGE2-d4–
62Prostaglandin K2PGK2349205−50−308.3PGE2-d4Up
6315-keto-Prostaglandin F215k PGF2351113−40−358.6PGE2-d4Up
64Prostaglandin E2PGE2351271−50-258.1PGE2-d4Up
65Prostaglandin D2PGD2351271−50−258.4PGE2-d4Up
6613,14-dihydro-15-keto Prostaglandin E2dhk PGE2351207−40−258.4PGE2-d4Up
6713,14-dihydro-15-keto Prostaglandin D2dhk PGD2351207−40−259.3PGE2-d4Up
68Prostaglandin F2αPGF2α353193−50−308.5PGE2-d4Up
6915-keto-Prostaglandin F1α15k PGF1α353113−50−353.1PGE2-d4–
7011β-13,14-dihydro-15-keto-Prostaglandin F2α11β dhk PGF2α353113−50−359.3PGE2-d4Up
71Prostaglandin E1PGE1353273−55−258.1PGE2-d4Up
72Prostaglandin D1PGD1353273−55−258.5PGE2-d4Up
73Prostaglandin F1αPGF1α355293−75−308.2PGE2-d4Up
7413,14-dihydro-Prostaglandin F2αdh PGF2α355275−40−258.9PGE2-d4–
75Dihomo-Prostaglandin J2Dihomo-PGJ2361299−55−2513.0PGE2-d4Up
76Dihomo-15-deoxy-Prostaglandin J2Dihomo-15d PGJ2361299−55−2514.4PGE2-d4Up
77Thromboxane B3TXB3367169−50−256.4PGE2-d4–
78Dihomo-Prostaglandin F2αDihomo-PGF2α381221−75−3510.0PGE2-d4Up
79Dihomo-Prostaglandin D2Dihomo-PGD2379299−65−3010.4PGE2-d4Up

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Lee, J.W.; Mok, H.J.; Lee, D.-Y.; Park, S.C.; Ban, M.S.; Choi, J.; Park, C.G.; Ahn, Y.-S.; Kim, K.P.; Kim, H.D. UPLC-MS/MS-Based Profiling of Eicosanoids in RAW264.7 Cells Treated with Lipopolysaccharide. Int. J. Mol. Sci. 2016, 17, 508. https://doi.org/10.3390/ijms17040508

AMA Style

Lee JW, Mok HJ, Lee D-Y, Park SC, Ban MS, Choi J, Park CG, Ahn Y-S, Kim KP, Kim HD. UPLC-MS/MS-Based Profiling of Eicosanoids in RAW264.7 Cells Treated with Lipopolysaccharide. International Journal of Molecular Sciences. 2016; 17(4):508. https://doi.org/10.3390/ijms17040508

Chicago/Turabian Style

Lee, Jae Won, Hyuck Jun Mok, Dae-Young Lee, Seung Cheol Park, Myeong Soon Ban, Jehun Choi, Chun Geon Park, Young-Sup Ahn, Kwang Pyo Kim, and Hyung Don Kim. 2016. "UPLC-MS/MS-Based Profiling of Eicosanoids in RAW264.7 Cells Treated with Lipopolysaccharide" International Journal of Molecular Sciences 17, no. 4: 508. https://doi.org/10.3390/ijms17040508

APA Style

Lee, J. W., Mok, H. J., Lee, D. -Y., Park, S. C., Ban, M. S., Choi, J., Park, C. G., Ahn, Y. -S., Kim, K. P., & Kim, H. D. (2016). UPLC-MS/MS-Based Profiling of Eicosanoids in RAW264.7 Cells Treated with Lipopolysaccharide. International Journal of Molecular Sciences, 17(4), 508. https://doi.org/10.3390/ijms17040508

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