Pathways Regulating Spheroid Formation of Human Follicular Thyroid Cancer Cells under Simulated Microgravity Conditions: A Genetic Approach
Abstract
:1. Introduction
2. Results and Discussion
2.1. Spheroid Formation
2.2. Impact of Simulated Microgravity on the Activation of Genes Coding for Selected Proteins
2.3. Three-Dimensional Growth Signaling Pathways
2.4. Factors Regulating the Amount of Extracellular Proteins
2.5. In Silico Search for Mutual Gene Regulation
3. Experimental Section
3.1. Cells
3.2. Random Positioning Machine
3.3. F-Actin Staining
3.4. RNA Isolation
3.5. Quantitative Real Time PCR
3.6. Pathway Studio Analysis
3.7. Statistics
4. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
Abbreviation
ACTA2 | Actin aortic smooth muscle (P62736) |
ACTB | Actin cytoplasmic 1 (P60709) |
AD | Adherent |
AKT1 | RAC-α serine/threonine-protein kinase (P31749) |
CAV1 | Caveolin-1 (Q03135) |
CAV2 | Caveolin-2 (P51636) |
CCL2 | C–C motif chemokine 2 (P13500) |
CTGF | Connective tissue growth factor (P29279) |
EZR | Ezrin (P15311) |
FIGF or VEGFD | Vascular endothelial growth factor D (O43915) |
FLK1 or KDR | Vascular endothelial growth factor receptor 2 (P35968) |
KRT8 | Keratin type II cytoskeletal 8 (P05787) |
LOX | Protein-lysine 6-oxidase (P28300) |
MCS | Multicellular spheroids |
MCTS | Multicellular tumor spheroid |
MMP-3 | Matrix metalloproteinase-3 or Stromelysin-1 (P08254) |
MMP-9 | Matrix metalloproteinase-9 (P14780) |
MSN | Moesin (P26038) |
PRKCA | Protein kinase C alpha type (P17252) |
qPCR | Quantitative real-time PCR |
RDX | Radixin (P35241) |
RHOA | protein: Ras homolog gene family, member A; gene: Transforming protein RhoA (P61586) |
RPM | Random Positioning Machine |
RWV | Rotating Wall Vessel |
SERPINE1 | Plasminigen activator inhibitor 1 (P05121) |
TGFB1 | Transforming growth factor β-1 (P01137) |
TGFBR1 | Transforming growth factor beta receptor type 1 (P36897) |
TGFBR3 | Transforming growth factor beta receptor type 3 (Q03167) |
TUBB | Tubulin β (P07437) |
VCAM1 | Vascular cellular adhesion protein 1 (P19320) |
VEGFA | Vascular endothelial growth factor A (P15692) |
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Gene | F-Primer | Sequence | R-Primer | Sequence |
---|---|---|---|---|
18S rRNA | 18S-F | GGAGCCTGCGGCTTAATTT | 18S-R | CAACTAAGAACGGCCATGCA |
ACTA2 | ACTA2-F | GAGCGTGGCTATTCCTTCGT | ACTA2-R | TTCAAAGTCCAGAGCTACATAACACAGT |
ACTB | ACTB-F | TGCCGACAGGATGCAGAAG | ACTB-R | GCCGATCCACACGGAGTACT |
AKT1 | AKT1-F | CTTCTATGGCGCTGAGATTGTG | AKT1-R | CAGCATGAGGTTCTCCAGCT |
CAV1 | CAV1-F | CCTCCTCACAGTTTTCATCCA | CAV1-R | TGTAGATGTTGCCCTGTTCC |
CAV2 | CAV2-F | GATCCCCACCGGCTCAAC | CAV2-R | CACCGGCTCTGCGATCA |
CTGF | CTGF-F | ACAAGGGCCTCTTCTGTGACTT | CTGF-F | GGTACACCGTACCACCGAAGAT |
EZR | EZR-F | GCAATCCAGCCAAATACAACTG | EZR-R | CCACATAGTGGAGGCCAAAGTAC |
FLK1 | FLK1-F | TCTTCTGGCTACTTCTTGTCATCATC | FLK1-R | GATGGACAAGTAGCCTGTCTTCAGT |
KRT8 | KRT8-F | GATCTCTGAGATGAACCGGAACA | KRT8-R | GCTCGGCATCTGCAATGG |
LOX | LOX-F | TGGGAATGGCACAGTTGTCA | LOX-R | AGCCACTCTCCTCTGGGTGTT |
MCP1 | MCP1-F | GCTATAGAAGAATCACCAGCAGCAA | MCP1-R | TGGAATCCTGAACCCACTTCTG |
MMP3 | MMP3-F | ACAAAGGATACAACAGGGACCAA | MMP3-R | TAGAGTGGGTACATCAAAGCTTCAGT |
MMP9 | MMP9-F | CCTGGAGACCTGAGAACCAATC | MMP9-R | TTCGACTCTCCACGCATCTCT |
MSN | MSN-F | GAAATTTGTCATCAAGCCCATTG | MSN-R | CCATGCACAAGGCCAAGAT |
PAI1 | PAI1-F | AGGCTGACTTCACGAGTCTTTCA | PAI1-R | CACTCTCGTTCACCTCGATCTTC |
PRKCA | PRKCA-F | TGGGTCACTGCTCTATGGACTTATC | PRKCA-R | CGCCCCCTCTTCTCAGTGT |
RDX | RDX-F | GAAAATGCCGAAACCAATCAA | RDX-R | GTATTGGGCTGAATGGCAAATT |
RHOA | RHOA-F | CGTTAGTCCACGGTCTGGTC | RHOA-R | GCCATTGCTCAGGCAACGAA |
TGFB1 | TGFB1-F | CACCCGCGTGCTAATGGT | TGFB1-R | AGAGCAACACGGGTTCAGGTA |
TGFBR1 | TGFBR1-F | CGCACTGTCATTCACCATCG | TGFBR1-R | CACGGAACCACGAACGTTC |
TUBB | TUBB-F | CTGGACCGCATCTCTGTGTACTAC | TUBB-R | GACCTGAGCGAACAGAGTCCAT |
VCAM | VCAM-F | CATGGAATTCGAACCCAAACA | VCAM-R | GGCTGACCAAGACGGTTGTATC |
VEGFA | VEGFA-F | GCGCTGATAGACATCCATGAAC | VEGFA-R | CTACCTCCACCATGCCAAGTG |
VEGFD | VEGFD-F | TGCAGGAGGAAAATCCACTTG | VEGFD-R | CTCGCAACGATCTTCGTCAA |
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Riwaldt, S.; Bauer, J.; Wehland, M.; Slumstrup, L.; Kopp, S.; Warnke, E.; Dittrich, A.; Magnusson, N.E.; Pietsch, J.; Corydon, T.J.; et al. Pathways Regulating Spheroid Formation of Human Follicular Thyroid Cancer Cells under Simulated Microgravity Conditions: A Genetic Approach. Int. J. Mol. Sci. 2016, 17, 528. https://doi.org/10.3390/ijms17040528
Riwaldt S, Bauer J, Wehland M, Slumstrup L, Kopp S, Warnke E, Dittrich A, Magnusson NE, Pietsch J, Corydon TJ, et al. Pathways Regulating Spheroid Formation of Human Follicular Thyroid Cancer Cells under Simulated Microgravity Conditions: A Genetic Approach. International Journal of Molecular Sciences. 2016; 17(4):528. https://doi.org/10.3390/ijms17040528
Chicago/Turabian StyleRiwaldt, Stefan, Johann Bauer, Markus Wehland, Lasse Slumstrup, Sascha Kopp, Elisabeth Warnke, Anita Dittrich, Nils E. Magnusson, Jessica Pietsch, Thomas J. Corydon, and et al. 2016. "Pathways Regulating Spheroid Formation of Human Follicular Thyroid Cancer Cells under Simulated Microgravity Conditions: A Genetic Approach" International Journal of Molecular Sciences 17, no. 4: 528. https://doi.org/10.3390/ijms17040528