Is Upregulation of Aquaporin 4-M1 Isoform Responsible for the Loss of Typical Orthogonal Arrays of Particles in Astrocytomas?
Abstract
:1. Introduction
2. Results
2.1. Determination of Orthogonal Arrays of Particles (OAPs) from Low-Grade to High-Grade Malignancies
2.2. Determination of Aquaporin 4 (AQP4)-M1 and -M23 mRNA in Low-Grade and High-Grade Astrocytomas
2.3. Determination of AQP4-M1 and -M23 mRNA in Cultures of Normal Astrocytes and Glioma Cells
3. Discussion
4. Materials and Methods
4.1. Tissue
4.2. Cell Culture
4.3. Freeze Fracture Technique and Determination of OAP Densities
4.4. RNA Extraction
4.5. cDNA Synthesis
4.6. Quantitative Real Time-PCR (qRT-PCR)
4.7. Data Analysis and Statistics
5. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Protein Expression/Protein Complex | Healthy Brain | Glioblastoma |
---|---|---|
Agrin | + | − |
Dystroglycan | + | − |
Active MMP3 | − | + |
Active MMP2/9 | − | + |
OAPs | + | − |
Patient Number | Astrocytoma WHO Grade | IDH1 |
---|---|---|
1 | II | IDH1 (R132H) mutation (IDH1+) |
2 | II | IDH1 R132H) mutation (IDH1+) |
3 | II | IDH1 (R132H) mutation (IDH1+) |
4 | II | IDH1 (R132H) mutation (IDH1+) |
5 | II | IDH1 (R132H) mutation (IDH1+) |
6 | II | IDH1 (R132H) mutation (IDH1+) |
7 | III | IDH1 (R132H) mutation (IDH1+) |
8 | III | IDH1 (R132H) mutation (IDH1+) |
9 | III | IDH1 (R132H) mutation (IDH1+) |
10 | III | IDH1 (R132H) mutation (IDH1+) |
11 | III | IDH1 (R132H) mutation (IDH1+) |
12 | IV | IDH1 wildtype (IDH1−) |
13 | IV | IDH1 wildtype (IDH1−) |
14 | IV | IDH1 wildtype (IDH1−) |
15 | IV | IDH1 wildtype (IDH1−) |
16 | IV | IDH1 wildtype (IDH1−) |
17 | IV | IDH1 wildtype (IDH1−) |
18 | IV | IDH1 wildtype (IDH1−) |
19 | IV | IDH1 wildtype (IDH1−) |
20 | IV | IDH1 wildtype (IDH1−) |
21 | IV | IDH1 wildtype (IDH1−) |
22 | IV | IDH1 wildtype (IDH1−) |
Primer | Sequence | Product Size |
---|---|---|
HPRT1 Ex6 for HPRT1 Ex7 rev | TGACACTGGCAAAACAATGC TTCGTGGGGTCCTTTTCACC | 101 bp |
AQP4 M1 Ex1 for AQP4 M1 Ex2 rev | GGGGAAGGCATGAGTGACAG AAAGCTTGAGTCCAGACCCC | 110 bp |
AQP4 M23 Ex1 for AQP4 M23 Ex2 rev | TCTCTTTTCAGTAAGTGTGGACCT CATGGCCAGAAATTCCGCTG | 114 bp |
Primer | Sequence | Product Size |
---|---|---|
HPRT Ex6 Mus for HPRT Ex7 Mus rev | CAAACTTTGCTTTCCCTGGT GGCCTGTATCCAACACTTCG | 91 bp |
AQP4 M1 Mus Ex1 for AQP4 M1 Mus Ex2 rev | AGGGAAGGCATGAGTGACAG GACTCCTTTGAAAGCCACCA | 96 bp |
AQP4 M23X Mus for AQP4 M23X Mus rev | TATGGTTCACGGGTTTGGAT CCCTTTGTCACCTGCTCATT | 139 bp |
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Fallier-Becker, P.; Nieser, M.; Wenzel, U.; Ritz, R.; Noell, S. Is Upregulation of Aquaporin 4-M1 Isoform Responsible for the Loss of Typical Orthogonal Arrays of Particles in Astrocytomas? Int. J. Mol. Sci. 2016, 17, 1230. https://doi.org/10.3390/ijms17081230
Fallier-Becker P, Nieser M, Wenzel U, Ritz R, Noell S. Is Upregulation of Aquaporin 4-M1 Isoform Responsible for the Loss of Typical Orthogonal Arrays of Particles in Astrocytomas? International Journal of Molecular Sciences. 2016; 17(8):1230. https://doi.org/10.3390/ijms17081230
Chicago/Turabian StyleFallier-Becker, Petra, Maike Nieser, Ulrike Wenzel, Rainer Ritz, and Susan Noell. 2016. "Is Upregulation of Aquaporin 4-M1 Isoform Responsible for the Loss of Typical Orthogonal Arrays of Particles in Astrocytomas?" International Journal of Molecular Sciences 17, no. 8: 1230. https://doi.org/10.3390/ijms17081230
APA StyleFallier-Becker, P., Nieser, M., Wenzel, U., Ritz, R., & Noell, S. (2016). Is Upregulation of Aquaporin 4-M1 Isoform Responsible for the Loss of Typical Orthogonal Arrays of Particles in Astrocytomas? International Journal of Molecular Sciences, 17(8), 1230. https://doi.org/10.3390/ijms17081230