Teleosts Genomics: Progress and Prospects in Disease Prevention and Control
Abstract
:1. Introduction
2. Metagenomics Analyses
2.1. Shotgun Pyrosequencing
2.2. Deep Amplicon Sequencing
3. Antimicrobial Peptides (AMPs) and Antiviral Compounds
3.1. Hepcidins
3.2. Epinecidin-1
3.3. Other Antimicrobial Peptides
3.4. Interferon
3.5. Therapeutic Compounds
4. Application of Genomic Studies in Vaccine Development
5. Application of Functional Genomics in Disease Control
5.1. Genetic Markers of Disease Resistance and Susceptibility
5.2. Immunological Markers of Disease Resistance
6. Conclusions
Acknowledgments
Author Contributions
Conflicts of Interest
References
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Disease/Pathogen | Fish Species | Reference |
---|---|---|
Infectious salmon anemia | Atlantic salmon (Salmo salar L.) | [8] |
Flavobacterium psychrophilum | Rainbow trout (Oncorhynchus mykiss) | [9] |
Viral hemorrhagic scepticemia virus | Rainbow trout (Oncorhynchus mykiss) | [10] |
Grass carp reovirus | Grass carp (Ctenopharyngodon idella) | [96] |
Columnaris | Channel catfish (Ictalurus punctatus) | [97] |
Vibrio anguillarum | Japanese flounder (Paralichthys olivaceus) | [98] |
Aeromonas hydrophila | Rohu (Labeo rohita) | [99] |
Coldwater disease | Rainbow trout (Oncorhynchus mykiss) | [100] |
Viral haemorrhagic scepticemia | Turbot (Scophthalmus maximus) | [101] |
Monogenean (Benedenia seriolae) | Yellowtail (Seriola quinqueradiata) | [102] |
Philasterides dicentrarchi | Turbot (Scophthalmus maximus) | [103] |
Whirling disease | Rainbow trout (Oncorhynchus mykiss) | [104] |
Pasteurellosis | Gilhead sea bream (Sparus aurata) | [105] |
Infectious pancreatic necrosis | Atlantic salmon (Salmo salar L.) | [7,106,107,108,109,110] |
Gyrodactylus salaris | Atlantic salmon (Salmo salar L.) | [111] |
Lymphocystis disease | Japanese flounder (Paralichthys olivaceus) | [112,113] |
Salmonid alphavirus | Atlantic salmon (Salmo salar L.) | [114] |
Gene | Disease/Pathogen | Fish Species | Reference |
---|---|---|---|
MHC-IIB | Cold water | Rainbow trout (Oncorhynchus mykiss) | [120] |
MHC-IIB | Vibrio anguillarum | Japanese flounder (Paralichthys olivaceus) | [117] |
MHC-IIB | Edwardsiella tarda | Turbot (Scophthalmus maximus) | [121] |
MHC-IIB | Vibrio anguillarum | Half-smooth tongue sole (Symphurus thermophilus) | [122] |
MHC-IIB | Singapore iridovirus | Orange spotted grouper (Epinephelus coioides) | [118] |
MHC-II | Piscirickettsia | Atlantic salmon (Salmo salar L.) | [123] |
MHC-II | Aeromonas salmonicida | Atlantic salmon (Salmo salar L.) | [124,125] |
MHC-I and II | Infectious anemia virus | Atlantic salmon (Salmo salar L.) | [124] |
MHC-II | Infectious hematopoietic necrosis | Rainbow trout (Oncorhynchus mykiss) | [119] |
MHC-II | Infectious hematopoietic necrosis | cutthroat trout (Oncorhynchus clarki) | [119] |
IL-10B | Cyrprinid herpesvirus CyHV-3 | Common Carp (Cyprinus carpio) | [126] |
TLRs | Cyrprinid herpesvirus (CyHV-3) | Common Carp (Cyprinus carpio) | [127] |
TLR3 | Grass carp reovirus | Grass carp (Cyprinus carpio) | [128] |
TLR22 | Grass carp reovirus | Grass carp (Ctenopharyngodon idella) | [129] |
MDA5 | Grass carp reovirus | Grass carp (Ctenopharyngodon idella) | [130] |
RIG-I | Grass carp reovirus | Grass carp (Ctenopharyngodon idella) | [131] |
LGP2 | Grass carp reovirus | Grass carp (Ctenopharyngodon idella) | [132] |
Lysozyme | Vibrio harvey | Asian seabass (Lates calcarifer) | [133] |
Lysozyme | Photobacterium | Asian seabass (Lates calcarifer) | [133] |
LECT2 | Asian seabass (Lates calcarifer) | [134] | |
Ceruloplasmin | Aeromonas hydrophila | Rohu (Labeo rohita) | [135] |
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Munang’andu, H.M.; Galindo-Villegas, J.; David, L. Teleosts Genomics: Progress and Prospects in Disease Prevention and Control. Int. J. Mol. Sci. 2018, 19, 1083. https://doi.org/10.3390/ijms19041083
Munang’andu HM, Galindo-Villegas J, David L. Teleosts Genomics: Progress and Prospects in Disease Prevention and Control. International Journal of Molecular Sciences. 2018; 19(4):1083. https://doi.org/10.3390/ijms19041083
Chicago/Turabian StyleMunang’andu, Hetron Mweemba, Jorge Galindo-Villegas, and Lior David. 2018. "Teleosts Genomics: Progress and Prospects in Disease Prevention and Control" International Journal of Molecular Sciences 19, no. 4: 1083. https://doi.org/10.3390/ijms19041083