Comparative Genome Analyses Reveal the Genomic Traits and Host Plant Adaptations of Flavobacterium akiainvivens IK-1T
Abstract
:1. Introduction
2. Results
2.1. Genome Features of IK-1T
2.2. IK-1T is a Member of Terrestrial Clade-Affiliated Flavobacteria
2.3. An Open Pan-Genome of Flavobacteria
2.4. Synteny Between IK-1T and F. rivuli/F. subsaxonicum
2.5. Evolution Direction in the IK-1T Genome
2.6. Gliding Motility and Type 9 Secretion System in IK-1T
2.7. Type 2 Secretion System in IK-1T
2.8. Eukaryotic-Like Domain Containing Proteins in IK-1T
2.9. Quorum Sensing Mechanism
3. Discussion
4. Materials and Methods
4.1. Genome Functional Annotation
4.2. Annotation of Carbohydrate-Active Enzymes and Peptidases
4.3. Clustering of Orthologous Groups
4.4. Analysis of Synonymous/Nonsynonymous Substitution Rates
4.5. Analysis of Flavobacterium Akiainvivens IK-1T Secretion System
Supplementary Materials
Author Contributions
Funding
Conflicts of Interest
Abbreviations
IK-1T | Flavobacterium akiainvivens IK-1T |
LUCA | last universal common ancestor |
MRCA | most recent common ancestor |
HGT | horizontal gene transfer |
ELD | eukaryotic-like domains |
ANK | ankyrin repeat |
vWFA | von Willebrand factor type A domain |
MRJP | major royal jelly proteins |
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Wan, X. Comparative Genome Analyses Reveal the Genomic Traits and Host Plant Adaptations of Flavobacterium akiainvivens IK-1T. Int. J. Mol. Sci. 2019, 20, 4910. https://doi.org/10.3390/ijms20194910
Wan X. Comparative Genome Analyses Reveal the Genomic Traits and Host Plant Adaptations of Flavobacterium akiainvivens IK-1T. International Journal of Molecular Sciences. 2019; 20(19):4910. https://doi.org/10.3390/ijms20194910
Chicago/Turabian StyleWan, Xuehua. 2019. "Comparative Genome Analyses Reveal the Genomic Traits and Host Plant Adaptations of Flavobacterium akiainvivens IK-1T" International Journal of Molecular Sciences 20, no. 19: 4910. https://doi.org/10.3390/ijms20194910