The Citrus Flavonoid Nobiletin Downregulates Angiopoietin-like Protein 3 (ANGPTL3) Expression and Exhibits Lipid-Modulating Effects in Hepatic Cells and Adult Zebrafish Models
Abstract
:1. Introduction
2. Results
2.1. The Cytotoxic Effect of Nobiletin in Hepatic Cell Lines
2.2. Analysis of Nobiletin-Modulated Differentially Expressed genes (DEGs) in HepG2 Cells
2.3. The Effect of Nobiletin on ANGPTL3 Gene Expression in Hepatic Cells
2.4. Nobiletin Suppresses the Transcriptional Activity of the ANGPTL3 Promoter in HepG2 Cells
2.5. Nobiletin Inhibits ANGPTL3 Expression by Counteracting LXRα Activity
2.6. Nobiletin Docks into the Ligand-Binding Domain (LBD) of LXRα
2.7. Nobiletin Modulates the Levels of Plasma Lipids and Hepatic ANGPTL3 Expression in Adult Zebrafish
3. Discussion
4. Materials and Methods
4.1. Chemicals
4.2. Cell Culture and Compounds Treatment
4.3. Measurement of Cell Viability
4.4. RNA Preparation and Transcriptome Analysis
4.5. Gene Ontology (GO) and Gene Set Enrichment Analysis (GSEA)
4.6. Reverse-Transcription Quantitative PCR (RT–qPCR) Analysis
4.7. Western Blot Analysis
4.8. Measurement of Extracellular ANGPTL3 Proteins
4.9. Analysis of Lipoprotein Lipase (LPL) Activity
4.10. Plasmid Transfection and Measurement of ANGPTL3 Promoter Activity
4.11. Molecular Docking of Nobiletin to the LXRα Protein
4.12. Zebrafish Experiments and Compound Administration
4.13. Biochemical Analysis of Plasma Lipids in Zebrafish
4.14. Statistical Analysis
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Gene Symbol | Description | Rank in Metric Score | Running ES | log2(Nobiletin/Vehicle) |
---|---|---|---|---|
ANGPTL3 | angiopoietin like 3 | −0.890 | 0.012 | −0.883 |
PLA2G3 | phospholipase A2 group III | −0.826 | −0.016 | −0.817 |
TNF | tumor necrosis factor | −0.739 | −0.034 | −0.738 |
EEF1A2 | eukaryotic translation elongation factor 1 alpha 2 | −0.699 | −0.054 | −0.700 |
DGAT2 | diacylglycerol O-acyltransferase 2 | −0.591 | −0.044 | −0.577 |
CAV1 | caveolin 1 | −0.578 | −0.063 | −0.570 |
PCK1 | phosphoenolpyruvate carboxy kinase 1 | −0.547 | −0.066 | −0.547 |
TREM2 | triggering receptor expressed on myeloid cells 2 | −0.545 | −0.085 | −0.535 |
SORBS1 | sorbin and SH3 domain containing 1 | −0.538 | −0.101 | −0.537 |
VAV3 | vav guanine nucleotide exchange factor 3 | −0.478 | −0.083 | −0.462 |
CYP7A1 | cytochrome P450 family 7 subfamily A member 1 | −0.462 | −0.088 | −0.447 |
SCARB1 | scavenger receptor class B member 1 | −0.458 | −0.089 | −0.436 |
FMO5 | flavin containing dimethylaniline monoxygenase 5 | −0.442 | −0.099 | −0.439 |
TSPO | translocator protein | −0.432 | −0.094 | −0.431 |
PIK3IP1 | phosphoinositide-3-kinase interacting protein 1 | −0.432 | −0.115 | −0.431 |
IRS1 | insulin receptor substrate 1 | −0.425 | −0.100 | −0.424 |
RORA | RAR related orphan receptor A | −0.410 | −0.122 | −0.398 |
EPHA8 | EPH receptor A8 | −0.407 | −0.114 | −0.414 |
PPAP2A | phosphatidic acid phosphatase type 2A | −0.402 | −0.127 | −0.409 |
PDGFA | platelet derived growth factor subunit A | −0.396 | −0.135 | −0.388 |
SLC45A3 | solute carrier family 45 member 3 | −0.395 | −0.142 | −0.380 |
SNAI1 | snail family transcriptional repressor 1 | −0.389 | −0.156 | −0.384 |
ABCA2 | ATP binding cassette subfamily A member 2 | −0.383 | −0.162 | −0.389 |
PDGFRA | platelet derived growth factor receptor alpha | −0.383 | −0.180 | −0.383 |
NR1D1 | nuclear receptor subfamily 1 group D member 1 | −0.371 | −0.167 | −0.359 |
IGFBP7 | insulin like growth factor binding protein 7 | −0.368 | −0.179 | −0.364 |
BCL11B | BAF chromatin remodeling complex subunit BCL11B | −0.368 | −0.203 | −0.366 |
APOC1 | apolipoprotein C1 | −0.361 | −0.189 | −0.354 |
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Lin, C.-Y.; Chen, P.-Y.; Hsu, H.-J.; Gao, W.-Y.; Wu, M.-J.; Yen, J.-H. The Citrus Flavonoid Nobiletin Downregulates Angiopoietin-like Protein 3 (ANGPTL3) Expression and Exhibits Lipid-Modulating Effects in Hepatic Cells and Adult Zebrafish Models. Int. J. Mol. Sci. 2022, 23, 12485. https://doi.org/10.3390/ijms232012485
Lin C-Y, Chen P-Y, Hsu H-J, Gao W-Y, Wu M-J, Yen J-H. The Citrus Flavonoid Nobiletin Downregulates Angiopoietin-like Protein 3 (ANGPTL3) Expression and Exhibits Lipid-Modulating Effects in Hepatic Cells and Adult Zebrafish Models. International Journal of Molecular Sciences. 2022; 23(20):12485. https://doi.org/10.3390/ijms232012485
Chicago/Turabian StyleLin, Ching-Yen, Pei-Yi Chen, Hao-Jen Hsu, Wan-Yun Gao, Ming-Jiuan Wu, and Jui-Hung Yen. 2022. "The Citrus Flavonoid Nobiletin Downregulates Angiopoietin-like Protein 3 (ANGPTL3) Expression and Exhibits Lipid-Modulating Effects in Hepatic Cells and Adult Zebrafish Models" International Journal of Molecular Sciences 23, no. 20: 12485. https://doi.org/10.3390/ijms232012485
APA StyleLin, C. -Y., Chen, P. -Y., Hsu, H. -J., Gao, W. -Y., Wu, M. -J., & Yen, J. -H. (2022). The Citrus Flavonoid Nobiletin Downregulates Angiopoietin-like Protein 3 (ANGPTL3) Expression and Exhibits Lipid-Modulating Effects in Hepatic Cells and Adult Zebrafish Models. International Journal of Molecular Sciences, 23(20), 12485. https://doi.org/10.3390/ijms232012485