Pangenome Identification and Analysis of Terpene Synthase Gene Family Members in Gossypium
Abstract
:1. Introduction
2. Results
2.1. A Syntelog-Based Pangenome of Gossypium Genus
2.2. Identification of TPS Gene Family Based on Gossypium Pangenome
2.3. Mutational Load Analysis and Selection Pressure Analysis of Identified TPS Genes
2.4. Gene Structure Analysis of Representative TPS Genes across Cotton Species
2.5. Atypical TPS Genes in the Gossypium Pangenome
2.6. Identification of Herbivory-Responsive TPS Genes Using RNA-Seq Data
3. Discussion
4. Materials and Methods
4.1. Construction of a Syntelog-Based Pangenome for Gossypium Using Synteny
4.2. Identification of TPS Gene Family and Construction of the Phylogenetic Tree
4.3. The Mutational Load of TPS Genes in Different Gossypium Species
4.4. Ka/Ks Calculation
4.5. RNA-Seq Analysis
4.6. Conserved Motifs and Gene Structure Analysis
4.7. Coexpression Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Song, Y.; Han, S.; Wang, M.; Ni, X.; Huang, X.; Zhang, Y. Pangenome Identification and Analysis of Terpene Synthase Gene Family Members in Gossypium. Int. J. Mol. Sci. 2024, 25, 9677. https://doi.org/10.3390/ijms25179677
Song Y, Han S, Wang M, Ni X, Huang X, Zhang Y. Pangenome Identification and Analysis of Terpene Synthase Gene Family Members in Gossypium. International Journal of Molecular Sciences. 2024; 25(17):9677. https://doi.org/10.3390/ijms25179677
Chicago/Turabian StyleSong, Yueqin, Shengjie Han, Mengting Wang, Xueqi Ni, Xinzheng Huang, and Yongjun Zhang. 2024. "Pangenome Identification and Analysis of Terpene Synthase Gene Family Members in Gossypium" International Journal of Molecular Sciences 25, no. 17: 9677. https://doi.org/10.3390/ijms25179677