1. Introduction
Octapeptide hormone angiotensin II (AngII) plays a pivotal role as the primary effector molecule of renin–angiotensin–aldosterone system (RAAS). Its effects, both short and long-term, are primarily mediated through the binding to type 1 angiotensin receptor (AT1-R), a member of the G-protein-coupled receptor (GPCR) superfamily. AT1-R mainly acts via G
q/11-coupled signal transduction pathway, leading to the activation of phospholipase Cβ, which cleaves phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)
P2) into diacylglycerol (DAG) and inositol-1,4,5-trisphosphate (Ins(1,4,5)
P3), which serve as second messenger molecules. DAG activates protein kinase C (PKC), initiating numerous intracellular pathways, while Ins(1,4,5)
P3 triggers the release of Ca
2+ from the endoplasmic reticulum (ER), thereby inducing calcium signaling pathways [
1]. In addition to these mechanisms, AngII-stimulated AT1-R can also activate other G proteins, such as G
12/13 or G
i/o [
2,
3]. Furthermore, AT1-R also can initiate G-protein-independent signaling, primarily through β-arrestin activation [
4].
It is well established that the primary short-term effect of AngII in vascular smooth muscle cells (VSMC) is the induction of vasoconstriction through G
q/11 mediated Ca
2+ release. This rapid regulation of arterial blood pressure represents a significant mechanism in rapid cardiovascular adaptations [
1]. Additionally, AngII stimulates aldosterone release from the adrenal gland granulosa cells and induces a sense of thirst in the central nervous system. As such, AngII emerges as a crucial regulator of the human body’s electrolyte and fluid homeostasis [
5]. Moreover, the AngII also elicits long-lasting effects on the gene expression levels of numerous proteins, leading to the proliferation and migration of VSMCs, as well as the remodeling of blood vessels [
1]. Prolonged and exaggerated AT1-R activation is associated with various pathological outcomes, including vascular remodeling, enhancing atherosclerosis formation, and the development of hypertension. Consequently, these long-term effects of AngII action significantly contribute to the progression of serious cardiovascular diseases, such as heart failure or acute coronary syndrome [
6]. The activation of the mitogen-activated protein kinase (MAPK) pathways plays a significant role in the development of long-lasting and often pathological effects of AngII [
7]. AT1-R-mediated activation of various MAPKs in VSMCs is predominantly influenced by the transactivation of receptor tyrosine kinases, particularly the epidermal growth factor receptor (EGFR) [
1,
8,
9]. Additionally, AT1-R-mediated transactivation of other receptor tyrosine kinases, such as the platelet-derived growth factor receptor (PDGFR) and insulin-like growth factor 1 receptor (IGF1R), has also been documented [
10,
11]. This transactivation is promoted by matrix-metalloprotease-mediated shedding of heparin-binding epidermal growth factor-like growth factor (HB-EGF) [
12].
LIM and cysteine-rich domains 1 (LMCD1; also known as Dyxin) is a member of the LIM protein family [
13]. LIM proteins have diverse roles in cellular functions, primarily regulating gene expression, cytoskeletal remodeling, cell adhesion, cell motility, and signal transduction [
14]. They are recognized as modulators of GATA function, especially in cardiac, pulmonary, and hematopoietic tissues [
15,
16]. Structurally, LMCD1 contains two LIM domains at the C-terminus, a cysteine-rich domain at the N-terminus, and a PET (Prickle, Espinas, and Testin) domain in the central region [
13]. LIM domains contain conserved zinc-binding residues that can establish zinc-finger structures. Research on LMCD1 functions is still limited compared to other LIM proteins, but it has been identified as a repressor for GATA6, inhibiting its DNA binding in lung epithelium, cardiac myocytes, and vascular smooth muscle cells [
17,
18]. In the heart, LMCD1 has been linked to provoke cardiac hypertrophy via activation of calcineurin in mice, with increased cell growth and fibrosis observed in cardiac myocytes [
19,
20]. It has been recently reported that LMCD1 is involved in renal fibrosis [
21] and in the pathogenesis of lung diseases in systemic sclerosis [
17]. In the human aortic smooth muscle cell line, it was observed that thrombin significantly increased
LMCD1 expression through G
q/11 activation, promoting vascular smooth muscle proliferation and atherogenesis [
18]. Given the limited information about LMCD1 in both the physiological and pathophysiological actions of AngII —particularly in its primary target cells, vascular smooth muscle cells—we aimed to characterize the changes in LMCD1 expression in response to AngII stimulation, as well as its localization and functional effects in rat VSMCs.
As previously mentioned, AngII stimulation not only causes contraction in VSMCs but also leads to long-term changes in gene expression. While we have a comprehensive understanding of these mechanisms, the results were primarily derived from studies using immortalized cell cultures or VSMCs maintained for extended periods. It is well-known that primary VSMCs undergo increasing phenotypic changes with each passage. These changes typically start to manifest after 7–9 days in culture. To provide conditions that closely mirror in vivo circumstances, we used primary rat aortic VSMCs, limiting our experiments using cells in their third passage at the latest, thus avoiding aleatory phenotypic changes. These cell cultures are expected to report results that more sensibly reflect in vivo conditions.
The current study was undertaken to investigate the potential role of LMCD1 in response to AngII stimulation. Firstly, we investigated the expression and effects of LMCD1 in this study in rat VSMCs. We found that both gene and protein expressions of LMCD1 were elevated consistently in response to AngII stimulation, which indicates that LMCD1 can be an important effector in the long-term action of AngII on VSMCs. Secondly, we demonstrated that overexpression of LMCD1 protein in the A7r5 vascular smooth muscle cell line leads to increased cell proliferation and cell migration. Taken together, our data suggest that AngII-induced LMCD1 protein overexpression is an important factor mediating long-term effects, not only in the heart [
19] but also within the vasculature, contributing to the broader impact on the cardiovascular system.
3. Discussion
The long-term effects of excessive activity of the RAAS are well-known contributors to the pathogenesis of various cardiovascular diseases, including hypertension and atherosclerosis. The exaggerated activation and effects of AT1-R in vascular smooth muscle cells play a critical role in the formation of these pathological and often lethal conditions by inducing gene expression changes that lead to vascular remodeling processes such as proliferation, cell migration, and fibrosis [
6]. While many AngII-upregulated proteins in VSMCs have been linked to vascular remodeling [
26], the full understanding remains incomplete. Here, in this study, we focused on LMCD1 (formerly also known as Dyxin), a protein that has already been described to have proliferative effects in various cell types [
19,
27,
28,
29], whose role in the physiology of VSMCs and association with AngII-induced signaling pathways has not been clearly characterized.
We performed an Affymetrix GeneChip Microarray Expression Analysis to explore gene expression changes mediated by AngII stimulation, aiming to identify novel genes that are significantly regulated by this hormone and might play a role in AngII-induced vascular effects. As shown in
Figure 1A, the volcano plot from the transcriptome assay indicates that
LMCD1 is one of the genes that are significantly upregulated in response to 100 nM AngII stimulation. Given that the LMCD1 protein has already been described to have proliferative effects in many tissues, including cardiovascular tissues and cells, we sought to investigate its AngII-related upregulation and functional characteristics.
Next, we aimed to investigate the time course of
LMCD1 gene transcription and LMCD1 protein expression in VSMCs in response to AngII stimulation. As shown in
Figure 2A, the increase in
LMCD1 gene expression becomes significant one hour after the AngII stimulation and starts to decrease after five hours. Examination of protein expression revealed that LMCD1 level is highest around 24 h after the AngII stimulation, with levels decreasing after 48 h (
Figure 2B,C). Based on these results, we decided to use 24-h AngII stimulation for experiments concerning LMCD1 protein expression, and we used 2-h simulation for experiments investigating
LMCD1 gene expression.
Immunofluorescence microscopy in
Figure 2C suggested a Golgi and nuclear localization for the LMCD1 protein. Labeling different cell compartments with specific markers confirmed our hypothesis: LMCD1 protein showed colocalization with both cis- and trans-Golgi apparatus markers and was also present in the nucleus (
Figure 3). Given that LMCD1 primarily acts as a transcriptional co-factor, its nuclear localization aligns with its function. Although LMCD1’s presence in the Golgi apparatus has not been reported, further studies are needed to explore whether the protein is merely stored in the Golgi or serves a specific function there.
To elucidate the signaling pathways leading to the AngII-induced upregulation of
LMCD1, we performed experiments using various pharmacological inhibitors and measured gene expression changes with a quantitative real-time PCR method. Given that AngII (or its metabolites) can bind different receptors on VSMCs, we aimed to identify the receptor primarily responsible for
LMCD1 upregulation. Using candesartan, a highly specific AT1-R inhibitor, our results indicated that AT1-R plays a dominant role in AngII-mediated
LMCD1 expression increase (
Figure 4A). While AT1-R is mainly known for its G
q/11-coupled signal transduction, it also engages other G proteins, such as G
12/13, and small G proteins, as well as G-protein-independent signaling pathways involving β-arrestin recruitment are also important [
2]. We examined which of these pathways might be involved in LMCD1 regulation. In our approach, we first pretreated VSMCs with YM-254890, a G
q/11 protein inhibitor, prior to AngII stimulation (
Figure 4B). In separate experiments, we stimulated the cells with TRV120023, a β-arrestin-biased agonist of AT1-R (
Figure 4C). Finally, we examined the effect of AVP, as its V1 vasopressin receptor on VSMCs is also primarily linked to G
q/11 (
Figure 4D). As shown in
Figure 4B, blocking G
q/11 completely abolished AngII-mediated
LMCD1 gene expression changes. Additionally, AVP stimulation also increased
LMCD1 expression, though to a lesser extent than AngII (
Figure 4D). By contrast, stimulation of VSMCs with the biased agonist TRV120023 did not significantly alter
LMCD1 expression (
Figure 4C). These observations exclude the importance of β-arrestin-mediated signaling in gene expression regulation of
LMCD1 and confirm that LMCD1 upregulation occurs via a G
q/11-initiated mechanism in response to AngII stimulation in VSMCs.
In contrast to our previous studies investigating other gene expressions [
30], AngII-induced regulation of
LMCD1 gene expression was not dependent on EGFR transactivation. As shown in
Figure 5A, neither 50 ng/mL EGF stimulation (alone or combined with AngII) nor pretreatment of cells with growth factor receptor inhibitors significantly affected the AngII-induced
LMCD1 upregulation (
Figure 5B–E).
The alpha subunit of the activated G
q/11 protein activates phospholipase Cβ, which hydrolyzes PtdIns(4,5)
P2 to produce DAG, an activator of PKC, and Ins(1,4,5)
P3, an agonist of ER Ca
2+ channels. An increase in cytosolic calcium concentration in VSMCs leads to the activation of various Ca
2+-dependent kinases [
1,
31]. Pretreatment of VSMCs with Ca
2+ chelator BAPTA-AM, as well as pharmacological inhibitors of CaMKII, PKC, and Pyk2, revealed that calcium signal plays a crucial role in the AngII-induced LMCD1 level increase (
Figure 6A), whereas PKC and Pyk2 activities do not significantly affect this process (
Figure 6C,D). In contrast, the inhibition of CaMKII significantly reduced the AngII-induced upregulation of LMCD1 (
Figure 6B), though this effect was not as pronounced as that observed with BAPTA-AM. These findings suggest that parallel pathways may also be involved in the signaling leading to
LMCD1 upregulation.
Additionally, we investigated the roles of different MAPK isoforms known to participate in AngII-mediated gene expression changes. Our results clearly demonstrated that p38 MAPK inhibition significantly reduces the effect of AngII on
LMCD1 expression (
Figure 7C). Inhibiting the MEK-ERK1/2 and JNK pathways revealed that they do not have significant relevance in this process (
Figure 7A,B). AT1-R-mediated p38 MAPK activation can occur through various mechanisms. For instance, AngII-related reactive oxygen species (ROS) production, which is linked to NADPH oxidase (NOX) activation, plays an important crucial role in vascular functions, including remodeling and other pathological consequences [
30,
31]. However, our experiments using diphenyleneiodonium chloride (DPI), a commonly used pan-NOX-inhibitor, indicated that ROS production is not significantly involved in
LMCD1 upregulation in VSMCs (
Figure 7D). p38 MAPK activation may also occur via non-receptor tyrosine kinases, such as Src family member kinases, focal adhesion kinase (FAK), and Pyk2 [
32,
33]. However, pretreatment with Src inhibitor SKI-1 (
Figure 7D), as well as inhibition of FAK and Pyk2 (
Figure 6D), did not significantly affect AngII-induced
LMCD1 expression. Ca
2+-dependent CaMKII activation can serve as an upstream regulator of p38 MAPK [
34,
35,
36] since CaMKII inhibition effectively reduces the AngII-mediated
LMCD1 upregulation (
Figure 6B). Taken together, it appears that p38 MAPK activation involves the CaMKII pathway, but other mechanisms are possible due to the incomplete effect of CaMKII inhibition.
After investigating the AngII-mediated signaling pathways that lead to increased
LMCD1 expression, we examined potential changes in vascular functions associated with increased LMCD1 levels. To evaluate the functional attributes of LMCD1 in vascular smooth muscle, we overexpressed the LMCD1 protein in an immortalized vascular smooth muscle cell line, A7r5, as the rat primary VMCSs proved challenging to transfect. Despite the fact that the transfection efficiency of the cells was only 18–28%, the results of our functional assays showed notable effects. Cell proliferation was assessed using a
3H-leucine incorporation assay (
Figure 8B), and it was demonstrated that even partial LMCD1 overexpression led to increased cellular protein synthesis, a marker strongly associated with cell proliferation. Enhanced cell migration is another important aspect of vascular remodeling. This was assessed with an in vitro wound-healing scratch assay, and we examined the migration intensity of LMCD1 overexpressing A7r5 cells (
Figure 8C). Forty-eight hours after scratching, LMCD1-overexpressing cells showed significantly higher cell migration rates compared to controls, reinforcing the role of LMCD1 in VSMC proliferation and cell migration, supporting the data that LMCD1 is an important factor in the regulation of VSMC proliferation and migration [
37]. This study did not investigate whether AngII-regulated LMCD1 functions as a transcription factor. Our in vitro observations in VSMCs revealed that LMCD1 is localized to the Golgi apparatus, with slightly stronger signal intensity compared to the nucleus. This finding suggests that LMCD1 may have regulatory functions beyond transcriptional control. Further studies are required to explore this possibility and to delineate both the transcriptional and non-transcriptional roles of LMCD1 in vascular cells. Additionally, the precise involvement of LMCD1 in AngII-induced vascular changes needs to be validated through in vivo studies.
4. Materials and Methods
4.1. Materials
Plates and dishes for cell cultures were obtained from Greiner (Kremsmunster, Austria). Unless otherwise mentioned, all cell culture and molecular biology reagents were purchased from Thermo Fischer Scientific (Waltham, MA, USA). AngII, EGF, AVP, AG1478, AG1024, AG538, BAPTA-AM, CK59, PD98058, PF-562270, and SP600125 were ordered from Sigma-Aldrich (St. Louis, MO, USA). YM-25489 was purchased from Wako-Chemicals (Neuss, Germany). TRV120023 peptide (Sar-Arg-Val-TYR-Lys-His-Pro-Ala-OH) was synthesized by Proteogenix (Schiltigheim, France) to more than 98% purity. The anti-LMCD1 antibody was obtained from Abcam (Cambridge, UK), anti-β-actin antibody was purchased from Sigma-Aldrich (St. Louis, MO, USA), HRP-linked secondary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA), fluorescent antibodies for Western blot assay were purchased from Azure Biosystems (Dublin, CA, USA) and fluorescent secondary antibodies for immunocytochemistry were obtained from Thermo Fisher Scientific (Waltham, MA, USA). FastStart Essential DNA Green Master Mix was purchased from Roche (Basel, Switzerland). Unless otherwise mentioned, other chemical reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA).
4.2. Isolation of Primary VSMCs
The thoracic aorta of 40–60-day-old male Wistar rats (170–250 g) were used for cell culture preparation (Charles River Laboratories-Semmelweis University, Budapest). All animal procedures were approved by the Animal Care Committee of the Semmelweis University, Budapest, and by Hungarian authorities (No. 001/2139-4/2012), following legal and institutional guidelines for animal care. The investigation complies with the Guide for the Care and Use of Laboratory Animals (NIH, 8th edition, 2011).
The rat VSMCs were isolated and cultured according to the standard explant method [
38]. Briefly, the animals were sacrificed by decapitation and fast bleeding. The thoracic aorta was removed and carefully cleaned from adherent fat, connective tissues, and blood. The prepared aorta was cut into small pieces and treated with collagenase. After digestion, the small pieces were placed on a sterile plate in DMEM medium (Biosera, Nuaille, France) supplemented with 10% FBS (Biosera, Nuaille, France), 1% Glutamax (Gibco, Dublin, Ireland) and 1% penicillin-streptomycin (Lonza, Gampel, Switzerland). VSMCs were allowed to grow at 37 °C for 7–14 days, then passaged 2–3 times. Experiments were typically carried out after the third passage. The isolated VSMCs exhibited normal responses to Ang II stimulation, such as calcium signaling and ERK activation, and the homogeneity of primary VSMC cultures was checked by smooth muscle alpha-actin immunostaining [
28].
4.3. Cell Cultures
Most experiments were conducted on primary VSMCs isolated from young male Wistar rats. Additional experiments were performed on A7r5 cells, an immortalized rat vascular smooth muscle cell line obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). The A7r5 cells were subcultured in DMEM medium (Biosera, Nuaille, France) supplemented with 10% FBS (Biosera), 1% penicillin-streptomycin (Lonza, Gampel, Switzerland), and 1% Glutamax (Gibco, Dublin, Ireland). Cells were seeded onto 6-well plates and cultured to approximately 90% confluency at the final passage. A total of 16–24 h before the experiment, the medium was changed to serum-free DMEM. All cell cultures were stored at 37 °C in a 5% CO2 atmosphere.
4.4. Treatment Protocols
Before experiments, VSMCs were serum-deprived for 16–24 h, followed by treatment with agonists (AngII, AVP, EGF, or TRV120023), typically for 2 h. Control cell groups were treated with serum-free DMEM solution (vehicle). For time-dependence measurements, AngII stimulation was applied for 1 h to 6 h. In experiments involving inhibitors, VSMCs were pretreated with specific compounds or dimethyl sulfoxide (DMSO) for 10 or 30 min before stimulation with AngII, AVP, EGF, or TRV120023 for 2 h, alongside a control group stimulated with vehicle (serum-free DMEM).
4.5. DNA Construct
A DNA plasmid construct was designed to express HA-tagged LMCD1 protein using the pcDNA3.1 backbone. To amplify the full ORF of LMCD1, cDNA from VSMCs stimulated with AngII for 2 h served as the template. The initial PCR product was separated by electrophoresis, purified using the GeneJet Gel Extraction Kit (Thermo Fisher Scientific), and then subjected to a second round of PCR with primers containing restriction enzyme sites and the HA-tag sequence.
4.6. Plasmid Transfection
A7r5 cells were used for LMCD1 overexpression using pcDNA3.1 plasmid constructs. For the wound-healing assay, a total of 200,000–250,000 A7r5 cells were seeded into 6-well plates. In the case of the 3H-leucine incorporation assay, 20,000–30,000 A7r5 cells were passaged on 24-well plates one day before transfection. The cells were transfected using Lipofectamine 2000 Transfection Reagent (Thermo Fischer Scientific, Waltham, MA, USA), following the manufacturer’s instructions. Cells were used for experiments at least 24 h after the transfection.
4.7. Affymetrix GeneChip Analysis
Details of the analysis of the Affymetrix GeneChip raw data analysis are described in a previous study [
30]. Briefly, serum-starved VSMCs were stimulated with either vehicle or 100 nM AngII for 2 h at 37 °C, after which cells were lysed in Trizol reagent to prepare RNA. The analysis was conducted on the Affymetrix Rat Gene 1.0 ST GeneChip Array (Affymetrix, Santa Clara, CA, USA) by UD-GenoMed Medical Genomic Technologies Ltd., University of Debrecen, Debrecen, Hungary. Microarray experiments were performed in triplicate. Raw CEL files were background-corrected and normalized using the
oligo R package (1.58.0), and differential expression (AngII vs. vehicle) was analyzed with the
limma R package (3.50.3). Pathway activities were inferred from log2 fold-changes in the differential gene expression profile using the
decoupleR Python package (1.2.0). Weighted interactions between pathways and genes were obtained from PROGENy. A multivariate linear model was fitted that predicts the observed gene expression based on the PROGENy pathway-gene interactions. The t-values of the slopes reflect the activity score. A positive score indicates an active pathway, while a negative indicates inactivity.
4.8. RNA Isolation and cDNA Preparation
To isolate total RNA from VSMCs, the treatment of the cells was stopped by removing the medium and by washing the cells twice with cold, sterile PBS (137 mM NaCl; 2.7 mM KCl 2.7; 10.1 mM Na2HPO4; 1.8 mM KH2PO4, pH 7.4). Total RNA was extracted using the RNeasy Plus Mini kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions. RNA concentrations were measured spectrophotometrically by absorbance at 260 nm, and purity was assessed by the 260/280 and 230/260 nm ratios using a NanoDrop OneC spectrophotometer (Thermo Fischer Scientific, Waltham, MA, USA). Prior to the quantitative real-time PCR measurement, total RNA was reverse-transcribed to cDNA using the RevertAid Reverse Transcription Kit (ThermoFisher Scientific), according to the manufacturer’s instructions.
4.9. Quantitative Real-Time PCR
Gene expression changes were measured using a quantitative real-time PCR method. LightCycler 480 SYBR Green I Master kit (Roche, Basel, Switzerland) was used for the PCR reaction, following the manufacturer’s instructions, and a LightCycler 480 system (Roche, Basel, Switzerland) was used for the measurements. To determine mRNA levels of LMCD1, relative quantification mode was used with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as the reference housekeeping gene. The following primers were used for qRT-PCR determinations (5′-3′): GAPDH: Forward CCT GCA CCA CCA ACT GCT TAG, Reverse CAG TCT TCT GAG TGG CAG TGA TG; LMCD1 Forward CCT CGA GTG CAA AAG ATG TCC, Reverse AAT TTT CCG ATC ATC CTC CA. The thermal cycling program started with a 5-min pre-incubation at 95 °C, followed by 45 cycles of amplification. Each cycle consisted of 10 s at 95 °C, 5 s at 62 °C, and 15 s at 72 °C. Amplification was followed by a melting curve starting at 95 °C for 5 s, then 1 min at 65 °C and 97 °C, and cooling for 30 s at 40 °C. Fluorescence data, including melting curves, were obtained. Cycle threshold (Ct) values were calculated by the second derivative method using the advanced relative quantification analysis mode of LightCycler 480 Software 1.5.1. GAPDH was used for normalization, and gene expression levels were plotted against GAPDH expression. To calculate fold-changes in gene expression, the following formula was used: Ratio = EΔCt target gene/EΔCt GAPDH.
4.10. Western Blot Analysis
Samples for Western blot analysis were scraped into SDS sample buffer, supplemented with phosphatase and protease inhibitors, and then sonicated. Protein samples were separated on SDS-polyacrylamide gels and then transferred to PVDF membranes. After transfer and blocking, membranes were incubated with specific primary and secondary antibodies, some of which were HRP-labeled and visualized with chemiluminescent substrate reagents (Immobilion Western HRP substrate reagent, Millipore, Billerica, MA, USA), while other antibodies were labeled with fluorescent molecules. Both chemiluminescent and fluorescent signals were detected with the Azure c600 system (Azure Biosystems, Dublin, CA, USA). Results were quantified by densitometry with the help of ImageJ software 1.53e.
4.11. Immunocytochemistry
VSMCs were plated onto 8-well ibidi-plates (10,000 cells/well) and then stimulated with 100 nM AngII after overnight serum deprivation. Cells were fixated with 4% paraformaldehyde diluted in PBS and blocked with 5% BSA. Thereafter, cells were stained with different primary antibodies followed by fluorescent secondary antibodies (Alexa Fluor 488 or Alexa Fluor 568; Thermo Fischer Scientific). Nuclei were labeled with To-Pro reagent (Invitrogen, Waltham, MA, USA). Images were captured using a Zeiss LSM 710 confocal microscope (Zeiss AG, Jena, Germany).
4.12. 3H-Leucine Incorporation Assay
A7r5 cells were seeded on a 24-well plate (20,000–30,000 cells/well) and then transfected with LMCD1 overexpressing pcDNA3.1 plasmid or empty pcDNA3.1 plasmid. The next day, transfected cells were labeled with tritium-labeled leucine in serum-free DMEM for 24 h. Samples were collected by the following protocol: Cells were washed twice with ice-cold PBS and treated with 5% trichloroacetic acid (TCA) on ice. After 30 min, TCA was removed, and wells were washed twice with room-temperature PBS. Next, 0.5 mL 0.5 M NaOH was pipetted to the wells for 30 min at room temperature, and samples were collected into 10 mL of OptiPhase HiSafe3 scintillation cocktail (PerkinElmer, Waltham, MA, USA) containing vials. Wells were additionally washed with 100 µL of distilled water, which was also added to the vials. The radioactivity values were determined in a liquid scintillation counter, with a control sample containing only distilled water in the scintillation cocktail.
4.13. Wound-Healing Assay
To assess the migration capacity of cells, a wound-healing assay was performed. A sterile P200 pipette tip was used to scrape the cell monolayer, creating a wound. The medium was then replaced with DMEM containing 2% FBS to minimize proliferation-related effects. The wounded areas were photographed immediately after scratching using a Leica DMI6000 B (Leica, Wetzlar, Germany) microscope at 5× magnification. After 48 h, the same areas were re-photographed under identical conditions. Cell migration was quantified by analyzing the images with ImageJ software 1.53e.
4.14. Statistical Analysis
Gene expression data from qRT-PCR measurements were analyzed using multiple linear regression with a 95% confidence interval in order to determine the significance of inhibitor treatments, stimuli, and their interactions on the fold-change value of a given gene of interest. In the case of
Figure 2,
Figure 4B,C and
Figure 7, one-way ANOVA analyses were performed to compare stimulated and control groups. For the evaluation of
3H-leucine incorporation assay and wound-healing assay (
Figure 8), paired
t-tests were used. Statistical analyses and graph plotting were carried out with GraphPad Prism 9.1.2 software. Sample size (
n) in the figure legends refers to the number of independent experiments (biological replicates). Unless otherwise stated, data are presented as mean ± SE.