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3-Benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]benzothiazine-1,4(3aH)-dione

by
Ekaterina A. Lystsova
and
Ekaterina E. Khramtsova
*
Department of Organic Chemistry, Perm State University, ul. Bukireva, 15, 614990 Perm, Russia
*
Author to whom correspondence should be addressed.
Molbank 2023, 2023(4), M1749; https://doi.org/10.3390/M1749
Submission received: 26 November 2023 / Revised: 9 December 2023 / Accepted: 11 December 2023 / Published: 13 December 2023
(This article belongs to the Collection Heterocycle Reactions)

Abstract

:
The reaction of 3-benzoylpyrrolo[2,1-c][1,4]benzothiazine-1,2,4-trione with 2,3-dimethylquinoxaline afforded 3-benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]benzothiazine-1,4(3aH)-dione in a moderate yield. The compound was fully characterized.

1. Introduction

3a-(Quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A (Figure 1) core is a heterocyclic hybrid of two pharmacologically promising scaffolds, 1,4-thiazine [1] and quinoxaline [2]. For example, several heterocyclic compounds with a 1,4-thiazine core were reported to show good antibacterial [3,4,5] and antihypertensive [6,7,8] activities (Figure 1). In addition, several quinoxaline-based structures were used to develop antimicrobial [9] and cytotoxic [10] agents, inhibitors of platelet-derived growth factor receptor tyrosine kinase (PDGFR) [11], acetylcholinesterase (AChE), and butyrylcholinesterase (BChE) [12] (Figure 1). Thus, structures with a 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A scaffold are attractive objects for medicinal and pharmaceutical studies.
Recently, 3-aroylpyrrolo[1,2-a]quinoxaline-1,2,4(5H)-triones 1 ([e]-fused 1H-pyrrole-2,3-diones (FPDs) [13,14,15] bearing a quinoxaline core) were reported to react with quinaldine 2 or 2-methylquinoxalines 3, 4 to afford corresponding 3a-(quinolin-2-ylmethyl)pyrrolo[1,2-a]quinoxalines 5 or 3a-(quinoxalin-2-ylmethyl)pyrrolo[1,2-a]quinoxalines 6, 7 under mild conditions (Scheme 1) [16]. Compounds 5–7 bear isosteric moieties of the pharmacologically attractive 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A (Scheme 1).
In order to achieve pharmacologically valuable 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A derivatives, we studied the reaction of an exemplar of a recently emerged class of FPDs bearing a 1,4-thiazine moiety (3-aroylpyrrolo[2,1-c][1,4]benzothiazine-1,2,4-triones (APBTTs) [17,18,19]), compound 8, with 2,3-dimethylquinoxaline 4 (Scheme 2).

2. Results and Discussion

APBTTs are known to be prone to react with mononucleophiles NuH at three various electrophilic centers (C1, C3a, and C4), resulting in three types of products 9–11 [18] (Scheme 3). The reaction direction is highly dependent on the structure of NuH [18]. Thus, a study on the reactions of APBTTs with various nucleophiles is of high theoretical and practical interest.
The title product 12 bearing a pursued 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A core was obtained in several steps (Scheme 4). Initially, benzoylpyruvic acid 13 was obtained via the Claisen condensation of acetophenone and diethyl oxalate in the presence of sodium methoxide [20]. Then, the reaction of compound 13, o-aminophenol, and dicyclohexylcarbodiimide (DCC) afforded 1,4-benzothiazinone 14 [21]. After that, acylation of compound 14 via oxalyl chloride resulted in APBTT 8 [17]. And finally, the reaction of APBTT 8 and 2,3-dimethylquinoxaline 4 afforded the title compound 12 in a moderate yield.
Obviously, the formation of compound 12 proceeded via a nucleophilic attack of the CH2 group of the enamino–tautomer of 2,3-dimethylquinoxaline 4 on the C3a electrophilic center of APBTT 8 (Scheme 4).
The structure of compound 12 was confirmed using single-crystal X-ray analysis (CCDC 2307237, Figure 2, Figure 3 and Figure 4), IR, and NMR spectra.

3. Materials and Methods

3.1. General Information

1H and 13C NMR spectra (Supplementary Materials) were acquired using a Bruker Avance III 400 HD spectrometer (Bruker BioSpin AG, Faellanden, Switzerland) (at 400 and 100 MHz, respectively) in DMSO-d6 using the solvent residual signal (in 1H NMR, 2.50; in 13C NMR, 39.52) as an internal standard. The IR spectrum was recorded using a Perkin–Elmer Spectrum Two spectrometer (PerkinElmer Inc., Waltham, MA, USA) from a mull in mineral oil. Melting points were measured using a Mettler Toledo MP70 apparatus (Mettler-Toledo (MTADA), Schwerzenbach, Switzerland). Elemental analysis was conducted on a Vario MICRO Cube analyzer (Elementar Analysensysteme GmbH, Langenselbold, Germany). The single-crystal X-ray analysis of compound 12 was performed on an Xcalibur Ruby diffractometer (Agilent Technologies) (Oxfordshire, UK). The empirical absorption correction was introduced using a multi-scan method using the SCALE3 ABSPACK algorithm [22]. Using OLEX2 [23], the structures were solved with the SHELXS [24] program and refined using the full-matrix least-squares minimization in the anisotropic approximation for all non-hydrogen atoms with the SHELXL [25] program. Hydrogen atoms were positioned geometrically and refined using a riding model. All procedures with compound 8 were performed in oven-dried glassware. Benzene for procedures with compound 8 was distilled over Na before the use.

3.2. 3-Benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]-benzothiazine-1,4-(3aH)-dione 12

A mixture of 50.0 mg (149 µmol) of APBTT 8 and 23.5 mg (149 µmol) of 2,3-dimethylquinaxaline 4 in 2 mL of anhydrous benzene was stirred in a screw-capped vial at 85 °C for 2 h (until a yellow transparent solution was formed instead of a dark violet suspension characteristic of APBTT 8). Then, the reaction mixture was cooled to room temperature. About 1 mL of the solvent was evaporated. The formed precipitate was filtered off. Then, it was stirred in 1 mL of benzene at 85 °C for 5 min. Then, the formed precipitate was filtered off to yield the title compound 12. Yield: 48 mg (65%); white powder; mp 161–163 °C (decomp.). 1H NMR (DMSO-d6, 400 MHz): δ = 11.88 (br. s, 1H), 8.08 (m, 1H), 7.91–7.84 (m, 2H), 7.74 (m, 4H), 7.57 (m, 2H), 7.50–7.41 (m, 3H), 7.34 (m, 1H), 4.12 (m, 1H), 3.24 (m, 1H), 2.66 (s, 3H) ppm. 13C NMR (DMSO-d6, 100 MHz): δ = 192.2 (C4), 191.2 (COPh), 163.8 (C1), 153.5 (C2), 152.2 (C2′=N), 151.5 (C3′=N), 139.7, 139.5, 137.6, 132.8, 129.6, 129.4, 129.1 (2C), 128.9, 128.3, 128.1 (2C), 128.1, 127.9, 126.6, 126.5, 123.3, 123.2, 111.6 (C3), 70.9 (C3a), 31.9 (CH2), 22.2 (CH3) ppm. IR (mineral oil): 3060, 1723, 1694, 1645 cm−1. Anal. Calcd. (%) for C28H19N3O4S: C 68.14; H 3.88; N 8.51. Found: C 68.10; H 3.96; and N 8.59. The crystal structure of compound 12 was deposited at the Cambridge Crystallographic Data Centre with the deposition number CCDC 2307237.

Supplementary Materials

The following supporting information can be downloaded online: copies of NMR spectra and crystallographic data for new compounds.

Author Contributions

Conceptualization, E.E.K. and E.A.L.; methodology, E.A.L.; investigation, E.A.L. (synthetic chemistry); writing—original draft preparation, E.E.K. and E.A.L.; writing—review and editing, E.E.K. and E.A.L.; supervision, E.E.K.; project administration, E.E.K.; funding acquisition E.E.K. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the Russian Science Foundation (RSF-22-73-00088).

Data Availability Statement

The presented data are available in this article.

Acknowledgments

The authors sincerely thank Maksim V. Dmitriev (Perm State University, Perm, Russia) for their help with single-crystal X-ray analysis.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. 3a-[(Quinoxalin-2-yl)methyl]pyrrolo[2,1-c][1,4]benzothiazine core A and selected examples of pharmacologically active molecules based on the thiazine and quinoxaline scaffolds.
Figure 1. 3a-[(Quinoxalin-2-yl)methyl]pyrrolo[2,1-c][1,4]benzothiazine core A and selected examples of pharmacologically active molecules based on the thiazine and quinoxaline scaffolds.
Molbank 2023 m1749 g001
Scheme 1. Reaction of FPDs 1 with quinaldine 2 and 2-methylquinaxalines 3, 4 [13].
Scheme 1. Reaction of FPDs 1 with quinaldine 2 and 2-methylquinaxalines 3, 4 [13].
Molbank 2023 m1749 sch001
Scheme 2. Retrosynthetic analysis of 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A.
Scheme 2. Retrosynthetic analysis of 3a-(quinoxalin-2-ylmethyl)pyrrolo[2,1-c][1,4]benzothiazine A.
Molbank 2023 m1749 sch002
Scheme 3. Possible pathway reactions of APBTTs with mononucleophiles.
Scheme 3. Possible pathway reactions of APBTTs with mononucleophiles.
Molbank 2023 m1749 sch003
Scheme 4. Synthesis of 3-benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo-[2,1-c][1,4]benzothiazine-1,4-(3aH)-dione 12.
Scheme 4. Synthesis of 3-benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo-[2,1-c][1,4]benzothiazine-1,4-(3aH)-dione 12.
Molbank 2023 m1749 sch004
Figure 2. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 1).
Figure 2. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 1).
Molbank 2023 m1749 g002
Figure 3. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 2).
Figure 3. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 2).
Molbank 2023 m1749 g003
Figure 4. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 3).
Figure 4. Molecular structure of compound 12 showing a 30% probability amplitude displacement ellipsoids (view 3).
Molbank 2023 m1749 g004
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MDPI and ACS Style

Lystsova, E.A.; Khramtsova, E.E. 3-Benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]benzothiazine-1,4(3aH)-dione. Molbank 2023, 2023, M1749. https://doi.org/10.3390/M1749

AMA Style

Lystsova EA, Khramtsova EE. 3-Benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]benzothiazine-1,4(3aH)-dione. Molbank. 2023; 2023(4):M1749. https://doi.org/10.3390/M1749

Chicago/Turabian Style

Lystsova, Ekaterina A., and Ekaterina E. Khramtsova. 2023. "3-Benzoyl-2-hydroxy-3a-[(3-methylquinoxalin-2-yl)methyl]-1H-pyrrolo[2,1-c][1,4]benzothiazine-1,4(3aH)-dione" Molbank 2023, no. 4: M1749. https://doi.org/10.3390/M1749

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