Characterization of Highbush Blueberry (Vaccinium corymbosum L.) Anthocyanin Biosynthesis Related MYBs and Functional Analysis of VcMYB Gene
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Materials
2.2. Identification of ABRM Proteins in Blueberry
2.3. Bioinformatic Analysis of Blueberry ABRM Genes and Their Encoded Proteins
2.4. Gene Expression Analysis
2.5. Gene Cloning, Vector Construction and Transient Overexpression Analysis
3. Results
3.1. The Identified Blueberry ABRMs
3.2. Physiobiochemical Properties and Sequence Characteristics of Blueberrry ABRMs
3.3. Conserved Motifs in Blueberry ABRM Proteins and Gene Structures of Their Corresponding Genes
3.4. Cis-Acting Elements in Promoters of Blueberry ABRM Genes
3.5. Protein and Protein Interaction Analysis of Blueberry ABRM Proteins
3.6. Expression Analysis of Blueberry ABRM Genes
3.7. Transient Overexpression Analysis of Three VcMYB Variable Transcripts
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Target Gene | Primer Name | Primer Sequence | Target Length (bp) | Annealing Temperature (°C) | Applications |
---|---|---|---|---|---|
VcMYB | VcMYB-F | ATGGACATAGTTCCATTGGGAGTGA | 798 | 59 | Gene cloning |
VcMYB-R | TAAAATATCCCAAAGGTCCACATTGTC | ||||
VcMYB-InF | ACGGGGGACTCTAGAGGATCCATGGACATAGTTCCATTGGGAGTGA | 786/704/568 | 60 | Vector construction | |
VcMYB-InR | GCTCACCATCGCTGCACTAGTTAAAATATCCCAAAGGTCCACATTGTC | ||||
VcMYB-qF | TCCATTGGGAGTGAGAAAGG | 115 | 60 | qRT-PCR | |
VcMYB-qR | CAATCCTGCCCTGTAAGGAA | ||||
VcMYB6 | VcMYB6-qF | CTCTCCTCAGGTGGAGCATC | 164 | 60 | qRT-PCR |
VcMYB6-qR | TTCCTCTTGAGCGTGGAGTT | ||||
VcMYB2 | VcMYBL2-qF | TCAAAATCCACGTCCCTCTC | 92 | 60 | qRT-PCR |
VcMYBL2-qR | CATTCTCCGCTAGCTTGGTC | ||||
VcMYB23 | VcMYB23-qF | TGTTGGGAAACAGATGGTCA | 89 | 60 | qRT-PCR |
VcMYB23-qR | TTTCAAGTGGGTGTGCCATA | ||||
GAPDH | GAPDH-qF | ACTACCATCCACTCTATCACCG | 116 | 59 | qRT-PCR |
GAPHD-qR | AACACCTTACCAACAGCCTTG |
Protein Name | Gene ID | Homologous Protein Name | Homologous Gene ID | Similarity (%) | References |
---|---|---|---|---|---|
VcMYB | VaccDscaff1486-snap-gene-0.3 | VcMYBA | MH105054 | 93.40 | [32] |
AtMYB114 | At1G66380 | 74.36 | [36] | ||
HtMYB2 | MN887536 | 62.25 | [37] | ||
PELAN | KJ011144 | 59.87 | [38] | ||
EsMYB90 | XP_006391393 | 59.35 | [39] | ||
AtMYB90(PAP2) | At1G66390 | 58.97 | [36] | ||
AtMYB75(PAP1) | At1G56650 | 58.71 | [36] | ||
FhPAP1 | MT210093 | 56.86 | [40] | ||
MaAN2 | KY781168 | 56.86 | [41] | ||
AtMYB113 | At1G66370 | 56.77 | [36] | ||
MdMYB10 | EU51829.2 | 54.36 | [42] | ||
VcMYB12 | VaccDscaff43-snap-gene-6.43 | AtMYB12 | At2G47460 | 66.86 | [46] |
AtMYB11 | At3G62610 | 52.17 | [46] | ||
AtMYB111 | At5G49330 | 50.19 | [46] | ||
VcMYB123 | VaccDscaff34-augustus-gene-10.31 | AcMYB123 | MH643776 | 72.33 | [47] |
MdMYB9 | MDP0000210851 | 71.43 | [48] | ||
VcMYBL2 | VaccDscaff28-augustus-gene-197.19 | MdMYBL2 | NP_001281006.1 | 65.29 | [49] |
SmelMYBL1 | MN855525 | 51.61 | [50] | ||
VcMYB6 | VaccDscaff31-processed-gene-75.6 | MdMYB6 | DQ074461 | 55.26 | [51] |
IbMYB44 | itf03g30290.t1 | 51.46 | [52] | ||
VcPL | VaccDscaff13-augustus-gene-110.26 | OsPL | LOC_Os05g48010.1 | 75.19 | [53] |
VcMYB24L | VaccDscaff30-augustus-gene-338.25 | MdMYB24L | XM_008343218.2 | 75.00 | [54] |
VcRVE8 | VaccDscaff34-augustus-gene-308.23 | PbRVE8 | XP_009342285.1 | 68.22 | [55] |
VcCPC | VaccDscaff41-snap-gene-184.30 | AtCPC | At2G46410 | 67.06 | [56] |
VcMYBC1 | VaccDscaff32-augustus-gene-55.27 | AaMYBC1 | MN249175 | 57.41 | [57] |
VcMYB23 | VaccDscaff46-processed-gene-168.9 | MdMYB23 | MDP0000230141 | 55.15 | [58] |
VcMYB340 | VaccDscaff16-snap-gene-84.41 | IbMYB340 | itf12g05820.t1 | 55.02 | [52] |
VcPH4 | VaccDscaff39-augustus-gene-189.28 | CsPH4 | Cs9g03070 | 54.14 | [59] |
VcMYBATV | VaccDscaff1069-augustus-gene-0.8 | SlMYBATV | Solyc07g052490.4.1 | 53.57 | [60] |
VcMYB85 | VaccDscaff36-augustus-gene-8.19 | SiMYB85 | Seita.4G086300 | 50.72 | [61] |
Gene Name (ID) | CDS Length/bp | Protein Size/aa | MW/Da | PI | Instability Index | GRAVY | Subcellular Localization |
---|---|---|---|---|---|---|---|
VcMYB (VaccDscaff1486-snap-gene-0.3) | 822 | 273 | 31,294.22 | 6.01 | 41.78 | −0.749 | Nucleus |
VcMYB12 (VaccDscaff43-snap-gene-6.43) | 1083 | 360 | 39,534.64 | 6.68 | 54.28 | −0.603 | Nucleus |
VcMYB123 (VaccDscaff34-augustus-gene-10.31) | 828 | 275 | 31,260.2 | 7.55 | 52.05 | −0.705 | Nucleus |
VcMYBL2 (VaccDscaff28-augustus-gene-197.19) | 702 | 233 | 26,419.91 | 8.40 | 51.94 | −0.779 | Nucleus |
VcMYB6 (VaccDscaff31-processed-gene-75.6) | 1080 | 359 | 39,018.97 | 6.26 | 61.47 | −0.498 | Nucleus |
VcPL (VaccDscaff13-augustus-gene-110.26) | 903 | 300 | 33,807.74 | 5.90 | 55.58 | −0.702 | Nucleus |
VcMYB24L (VaccDscaff30-augustus-gene-338.25) | 573 | 190 | 21,953.61 | 6.16 | 54.33 | −0.854 | Nucleus |
VcRVE8 (VaccDscaff34-augustus-gene-308.23) | 942 | 313 | 33,898.29 | 7.78 | 46.57 | −0.462 | Chloroplast; Nucleus |
VcCPC (VaccDscaff41-snap-gene-184.30) | 297 | 98 | 11,752.33 | 9.72 | 79.67 | −1.014 | Nucleus |
VcMYBC1 (VaccDscaff32-augustus-gene-55.27) | 798 | 265 | 30,057.3 | 8.57 | 58.02 | −0.68 | Nucleus |
VcMYB23 (VaccDscaff46-processed-gene-168.9) | 738 | 245 | 27,819.19 | 6.41 | 36.10 | −0.668 | Nucleus |
VcMYB340 (VaccDscaff16-snap-gene-84.41) | 744 | 247 | 28,372.85 | 7.66 | 54.91 | −0.855 | Nucleus |
VcPH4 (VaccDscaff39-augustus-gene-189.28) | 1086 | 361 | 40,095.85 | 8.72 | 48.94 | −0.719 | Nucleus |
VcMYBATV (VaccDscaff1069-augustus-gene-0.8) | 222 | 73 | 8407.08 | 4.31 | 61.99 | −0.922 | Nucleus |
VcMYB85 (VaccDscaff36-augustus-gene-8.19) | 912 | 303 | 33,738.76 | 8.37 | 60.02 | −0.775 | Nucleus |
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Zhang, Y.; Huang, D.; Wang, B.; Yang, X.; Wu, H.; Qu, P.; Yan, L.; Li, T.; Cheng, C.; Qiu, D. Characterization of Highbush Blueberry (Vaccinium corymbosum L.) Anthocyanin Biosynthesis Related MYBs and Functional Analysis of VcMYB Gene. Curr. Issues Mol. Biol. 2023, 45, 379-399. https://doi.org/10.3390/cimb45010027
Zhang Y, Huang D, Wang B, Yang X, Wu H, Qu P, Yan L, Li T, Cheng C, Qiu D. Characterization of Highbush Blueberry (Vaccinium corymbosum L.) Anthocyanin Biosynthesis Related MYBs and Functional Analysis of VcMYB Gene. Current Issues in Molecular Biology. 2023; 45(1):379-399. https://doi.org/10.3390/cimb45010027
Chicago/Turabian StyleZhang, Yongyan, Dingquan Huang, Bin Wang, Xuelian Yang, Huan Wu, Pengyan Qu, Li Yan, Tao Li, Chunzhen Cheng, and Dongliang Qiu. 2023. "Characterization of Highbush Blueberry (Vaccinium corymbosum L.) Anthocyanin Biosynthesis Related MYBs and Functional Analysis of VcMYB Gene" Current Issues in Molecular Biology 45, no. 1: 379-399. https://doi.org/10.3390/cimb45010027