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Article

Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation

1
Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System, Science, Tsinghua University, Beijing 100084, China
2
Department of Geography, University of Brasilia (UnB), Brasilia CEP 70910-900, Brazil
3
International Joint Laboratory Sentinela, FIOCRUZ, UnB, IRD, Rio de Janeiro RJ-21040-900, Brazil
4
IRD, UM, UR, UG, UA, UMR ESPACE-DEV, 34090 Montpellier, France
5
Qian Xuesen Laboratory of Space Technology, China Academy of Space Technology, Beijing 100094, China
6
Center for Healthy Cities, Institute for China Sustainable Urbanization, Tsinghua University, Beijing 100084, China
*
Author to whom correspondence should be addressed.
Int. J. Environ. Res. Public Health 2020, 17(12), 4509; https://doi.org/10.3390/ijerph17124509
Submission received: 1 June 2020 / Revised: 17 June 2020 / Accepted: 18 June 2020 / Published: 23 June 2020

Abstract

:
In recent years there has been an increasing use of satellite Earth observation (EO) data in dengue research, in particular the identification of landscape factors affecting dengue transmission. Summarizing landscape factors and satellite EO data sources, and making the information public are helpful for guiding future research and improving health decision-making. In this case, a review of the literature would appear to be an appropriate tool. However, this is not an easy-to-use tool. The review process mainly includes defining the topic, searching, screening at both title/abstract and full-text levels and data extraction that needs consistent knowledge from experts and is time-consuming and labor intensive. In this context, this study integrates the review process, text scoring, active learning (AL) mechanism, and bidirectional long short-term memory (BiLSTM) networks, and proposes a semi-supervised text classification framework that enables the efficient and accurate selection of the relevant articles. Specifically, text scoring and BiLSTM-based active learning were used to replace the title/abstract screening and full-text screening, respectively, which greatly reduces the human workload. In this study, 101 relevant articles were selected from 4 bibliographic databases, and a catalogue of essential dengue landscape factors was identified and divided into four categories: land use (LU), land cover (LC), topography and continuous land surface features. Moreover, various satellite EO sensors and products used for identifying landscape factors were tabulated. Finally, possible future directions of applying satellite EO data in dengue research in terms of landscape patterns, satellite sensors and deep learning were proposed. The proposed semi-supervised text classification framework was successfully applied in research evidence synthesis that could be easily applied to other topics, particularly in an interdisciplinary context.

1. Introduction

According to the World Health Organism (WHO), dengue affects over half of the global population, with an estimated 100–400 million infections each year worldwide [1]. In recent years, dengue has been transmitted to new geographical areas in the world, and dengue epidemics are increasing in frequency and magnitude [2].
The spatial concentration and diffusion of dengue vectors/cases can be affected by weather conditions and landscape factors (e.g., vegetation, transport, urbanization) at different spatial scales (e.g., global, regional, and local scales) [3,4,5]. The advances in satellite Earth observation (EO) readily benefit the identification of dengue landscape factors by providing a better monitoring of the Earth’s surface at different spatio-temporal scales, and entomological/epidemiological dengue risk mapping benefits from the use of satellite EO data [5]. In practice, satellite EO data, combined with weather data, can be used to predict the likelihood of future dengue epidemics so that preventative measures can be taken in advance, such as eliminating mosquito-breeding sites. Compared with weather factors, landscape factors are often more complex as landscape is often related to the vectorial capacity through vector resting and breeding sites, human–vector encounters or human mobility in different geographic contexts and at different spatial scales [6]. Several important reviews have covered such information, for example, Parselia et al. [7] proposed a scoping review that identified studies using satellite EO data for epidemiological modeling of malaria, dengue and West Nile Virus (WNV) published from 2012 to 2018. However, only 15 studies were identified for dengue where satellite EO data were used to identify meteorological and environmental factors. Sallam et al. [8] proposed a systematic review that summarized land cover, meteorological and socioeconomic factors of Aedes habitats, referring to dengue vectors. Moreover, our previous mapping review [9] focused on the dengue transmission in urban landscapes, and urban landscape factors derived from satellite EO data, Geographic Information System (GIS) techniques and survey questionnaires; spatial scales and dengue–landscape relationships were identified from 78 relevant studies published from inception to 31 December 2019. Despite all this, there is still a lack of overview on satellite EO data and landscape factors that could be of benefit to science and society by guiding future studies of disease risk prediction and improving health decision-making at different spatial scales (e.g., from global to local).
Information updates can be simply conducted by re-running the process of review, which would mainly include defining the research question, searching for and removing duplicates, title abstract screening, full-text eligibility and inclusion [10,11]. However, the selection of relevant studies is time-consuming and is highly dependent on the perception of reviewers, especially for title abstract screening and full-text eligibility. Under such constrained circumstances, text classification appears particularly relevant. As a typical topic in natural language processing (NLP), multiple algorithms in text classification have proved to be efficient in replacing the manual evaluation of bibliographic records (e.g., titles and/or abstracts) and reducing human workload, such as term weighting [12] and multiple machine learning (ML) algorithms [13,14,15]. Recent advances in deep learning (DL) based on convolutional neutral networks (CNNs) and recurrent neural networks (RNNs) have been used in text classification [16,17,18]. Since text classification can be considered as one sequential modelling task, RNNs have been used more frequently because of their specificity for sequential modelling tasks [16]. One kind of RNN, the long short-term memory (LSTM) performs well in text classification because it can effectively solve the problems of exploding and vanishing gradients and capture long-term dependencies in text [19]. The bidirectional LSTM (BiLSTM) is a development of the LSTM and combines forward hidden and backward hidden layers that often work better than LSTM in text classification [16]. However, when applying the algorithms above, we need to label sufficiently good-quality samples for training and validating models, which is quite time-consuming. However, deep active learning (DAL), integrating active learning (AL) in DL architecture, is able to achieve text classification based on few labelled data which can minimize the work of human labelling [20,21,22]. It would seem to be more appropriate to implement text classification based on a new bibliographic dataset for selecting relevant records, while the labelled data derived from active learning could be used as training data to train the DL architecture [22].
In this context, focusing on landscape factors affecting dengue transmission and satellite EO data currently used for identifying landscape factors, this study proposes to build a semi-supervised classification framework of literature by integrating the review process and text classification algorithms and provides an overview of dengue landscape factors and satellite EO data. The proposed framework allows for rational and effective selection of literature relevant to our objective from bibliographic databases.

2. Towards a Semi-Supervised Classification Framework of Literature

The framework of semi-supervised text classification integrating the review process and semi-automatic text classification (Figure 1), includes: (1) defining the research question and specifying the inclusion criteria (Section 2.1); (2) conducting a board search and removing the duplicates (Section 2.2); (3) screening titles and abstracts based on text scoring (Section 2.3); (4) preparing relevant and irrelevant samples, and conducting the BiLSTM-based active learning (Section 2.4); (5) verifying the performance of text scoring and BiLSTM-based active learning (Section 2.5); and (6) extracting dengue landscape factors and satellite EO data and charting the results (Section 2.6).
To implement the text scoring in step 3, it is necessary to remove the records that are definitively irrelevant to our topic, which also reduces the amount of data for the BiLSTM-based active learning in step 4. It should be noted that the BiLSTM model was developed and implemented based on titles and abstracts that are different from the full-text assessment in the eligibility step of the review. The detailed information is presented hereafter and no ethics approval is needed as this method is based on published journal articles.

2.1. Research Question and Inclusion Criteria

The objective of this study is to provide an overview on landscape factors related to dengue transmission and satellite EO data used in the identification of dengue landscape factors. Relevant records should satisfy the following criteria: (1) being an original journal article published in English; (2) highlighting landscape factors derived from satellite EO data or geographic information system (GIS) techniques; (3) being applied to dengue cases or dengue vectors; (4) modelling or correlating dengue with landscape factors. These were defined based on our objective and expert knowledge, and were used for text scoring and record sample selection for BiLSTM models.

2.2. Board Searches and Removal of Duplicates

The searches were performed from inception to 31 December 2019 in four databases: Science Direct, Web of Science, PubMed and Scopus, by considering the titles and abstracts of English journal articles. The queries were formed by combining dengue-related terms (i.e., dengue and Aedes) and the words related to “remote sensing”, “landscape” and “weather” (i.e., remote sensing, satellite, earth observation, landscape, land cover, land use, household, dwelling, habitation, precipitation and temperature) using the Boolean operator “AND” (see more details in Table A1). All search records were combined together and the duplicate records were removed using the MySQL database. The remaining records were organized in alphabetical order for further analysis.

2.3. Text Scoring

To efficiently eliminate the definitely-irrelevant records, we used text weighting and text scoring for ranking all the records. First, we pre-set some terms KEYi (i = 1, …, m) and their priority levels (i.e., high, medium and low) (Table 1) according to the criteria in Section 2.1. Each of them was randomly assigned a weight value WEIGHTi (i = 1, …, m) from the interval of weights that was set according to its priority level. The higher the priority level of a term, the greater its weight value. We then extracted the key terms Kj (j = 1, …, n) and their corresponding weight values Wj (j = 1, 2, …, n) from the title and abstract using the Natural Language Toolkit (NLTK) in Python. If Kj contains pre-set terms in KEYi, we calculated the score of a record as Score =   WEIGHT i * W j (i = 1, …, m; j = 1, …, n). For example, through keyword extraction using NLTK, a bibliographic record has two key terms “dengue” and “satellite”, and their weights are W(dengue) and W(satellite). According to Table 1, the weights of these two terms were randomly assigned to 8 and 5. In this case, the score of this text is W (dengue)*8 + W (satellite)*5.
All the records were then ranked in decreasing order according to the scores, and the top 1000 records were selected and merged into a subset denoted as Uk. Finally, we iterated the second step 20 times, and the records in the 20 subsets Uk (k = 1, …, 20) were combined together, and were used for the next analysis. It should be noted that random assignment of weights allows multiple iterations of text scoring that should make the results more reliable.

2.4. BiLSTM-Based Active Learning

To efficiently and accurately select relevant records in the absence of sufficient labelled samples, we performed a BiLSTM-based active learning based on the titles and abstracts of the records derived from text scoring (Figure 1).
Prior to training the BiLSTM model (see more details in Appendix C) [23], we created an initial training dataset by selecting 15 relevant samples and 30 irrelevant samples from the results of text scoring based on the criteria in Section 2.1. The initial training dataset was used to train the BiLSTM model.
Based on the word embedding derived from the unlabelled data using the Word2Vec CBOW model [24] (see more details in Appendix B), the BiLSTM model was used to identify the “potential” records from unlabelled data, which were then manually labelled as either relevant or irrelevant based on the four criteria in Section 2.1. Meanwhile, we improved the training dataset by combining the selected relevant records and previous relevant samples, and randomly selected irrelevant records from the results of text scoring in order to keep the ratio of relevant and irrelevant samples at 1:2. Finally, the BiLSTM model was re-trained using the new training dataset to identify the potential citations from the remaining unlabelled data. The parameters of the BiLSTM architecture were updated by training the results from the previous round. BiLSTM learning and active learning were alternately implemented until we could not find any relevant records.

2.5. Inclusion, Perfomance and Rationality

Because all the algorithms were implemented based on the titles and abstracts, we evaluated the full-texts of the records derived from BiLSTM-based active learning for final inclusion of the articles that met the criteria in Section 2.1. In fact, bibliographic databases might misclassify some records as English journal articles and store their English titles and abstracts.
To verify the performance of the algorithms of text scoring and BiLSTM-active learning, we randomly selected 10% of unlabelled records derived from BiLSTM-based active learning and manually interpreted them as either relevant or irrelevant. This step was iterated three times. Moreover, to verify the rationality of text scoring and BiLSTM-based active learning, we computed the number of relevant records per score rank interval. Generally, the more relevant a record is to the topic in question, the greater the possibility it will receive a high score.

2.6. Information Extraction and Analysis

The satellite EO data and landscape factors were extracted manually and synthesized narratively in two ways: (1) charting the dengue landscape factors and their typologies in order to appraise the current situation, regardless of the differences in study areas, methods and materials; (2) tabulating the key characteristics of satellite EO data.

3. Results and Discussions

3.1. Semi-Supervised Text Classification

Table 2 presents the number of records for each step of semi-supervised text classification. A total of 13,893 bibliographic records were obtained after the broad search, and 7696 records were included after the removal of duplicates. Then, based on text scoring, we identified 2034 possible records, and 131 records were included after the BiLSTM-based active learning that met the inclusion criteria in Section 2.1. Finally, by reading the full texts, we included 101 articles (see more details in Appendix C). The non-English articles (e.g., Chinese, Spanish and Portuguese) and non-journal articles (e.g., book chapters, reviews or conference papers) were excluded.
Table 3 presents the results of each cycle of BiLSTM-based active learning. Evidently, all the relevant records were identified after the fourth cycle. Throughout the process of semi-supervised text classification, we manually evaluated 1056 titles/abstracts (Table 3).
Moreover, the accurate and rational identification of relevant records can be indicated by the following two facts. First, no relevant records were found by manually evaluating the records selected randomly from the unlabelled dataset (i.e., 925 records after BiLSTM-based active learning). This indicated a good performance of the semi-supervised text classification. Second, although each record probably received different scores in 20 text scoring experiments, the number of relevant records per score rank interval showed a consistent decreasing trend (Figure 2). This indicated the rationality of text scoring using the preset terms and priority levels, that is, the more relevant a record is to the topic question, the greater the possibility it will receive a high score.
The accurate and rational identification of relevant records can be explained by the facts: (1) A clear topic was defined. In fact, modelling or correlating dengue epidemiological or entomological variables with landscape factors in different geographic contexts often includes the identification of landscape factors, landscape characterization and spatio-temporal analysis of dengue cases or vectors. This interdisciplinary topic provides evident features that meet the definition of appropriate inclusion criteria. These criteria then help to define terms and priority levels for text scoring and active learning. (2) The union of the results of 20 text scoring experiments enable the inclusion of potential records as much as possible, and greatly exclude the irrelevant records. (3) BiLSTM has proved to be especially useful in understanding the context of words [23], and active learning based on clear and appropriate inclusion criteria allows for the accurate selection of relevant records and for the control of the balance of positive and negative samples in training datasets for each cycle in BiLSTM learning. Moreover, it should be noted that other models are possible, such as BiLSTM with attention mechanism (AC-BiLSTM) [16] or a combination of CNN and LSTM (C-LSTM) [25], which might generate a high accuracy of text classification.

3.2. Dengue Landscape Factors

Due to the different study objectives, study areas and spatio-temporal scales, it is difficult to compare the 101 selected studies to find any underlying common viewpoints on the role of landscape factors in dengue transmission. The detailed landscape factors for each study are listed in Table A2. Here, we simply grouped these landscape factors into four categories according to the study [26] (Figure 3):
  • Land cover (LC) refers to the physical and biological cover over the land surface, including built-up areas, vegetation, water/wetlands, open land and savannah. Among them, vegetation often has an association with the vectors’ behaviours and biological cycles, which could be linked with the spatial and temporal dynamics of vectors or the potential resting and breeding sites. Water and wetlands often provide information of places of stagnant water, which are potential breeding sites for dengue vectors.
  • Land use (LU) refers to a territory characterized by current and future planned functional or socio-economic purposes, including agricultural areas, commercial areas, construction areas, industrial areas, ponds, religious areas, residential areas, transport, unused areas, urban areas and rural areas. LU types not only indicate whether the areas are favourable to vector breeding, but also provide information of human behaviour and activities in the areas, the levels of human–Aedes encounters, dispersal of mosquitoes and people movement, which are significantly related to dengue epidemics.
  • Topographic factors may provide a proxy of habitat suitability or climate conditions, including elevation, aspect, slope, drainage network, and flow accumulation.
  • Spatially continuous land surface features include spectral indices of vegetation, water and built-up areas (e.g., normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), vegetation fraction index (VFC), normalized difference water index (NDWI), and normalized difference built-up index (NDBI)). Moreover, land surface temperature (LST) refers to a measure of radiative skin temperature of the land surface, which is a significant factor affecting the dengue transmission.

3.3. Satellite Earth Observation Data

Among the 101 included articles, only 64 studies used satellite EO data. Table 4 presents the satellite EO sensors, derived products and spatio-temporal resolutions used for identifying dengue landscape factors in selected studies. Evidently, for LU/LC mapping, most studies used very fine (i.e., pixel size < 10 m) and fine (i.e., 10 m ≤ pixel size < 100 m) spatial resolution data, including multi-spectral bands derived from Landsat 4 Thematic Mapper (TM), Landsat 5 TM, Landsat 7 Enhanced Thematic Mapper (ETM+), Landsat 8 Operational Land Imager (OLI), Indian Remote-Sensing Satellite-P6 (IRS-P6), Satellite Pour l’Observation de la Terre 4 (SPOT-4), Sentinel-2, GaoFen-1, SPOT-5, Advanced Land Observing Satellite (ALOS), IKONOS and Quickbird. For topographic factors, two global scale and freely available digital elevation models (DEMs) at resolutions of 30 m and 90 m from the Shuttle Radar Topography Mission (SRTM) and the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) mission were used to extract topographic features. For continuous land surface features, moderate resolution imaging spectroradiometer (MODIS) products with coarse resolution (i.e., 1000 m ≤ pixel size < 10,000 m) and moderate resolution (i.e., 100 m ≤ pixel size < 1000 m) were widely used to characterize them. In addition, some EO data with fine resolution (i.e., 10 m ≤ pixel size < 100 m) have also made a contribution, such as data from Landsat 5, 7 and 8, SPOT 5 and GeoFen-1.
Although satellite EO sensors and products are pointed out, we do not explain what should be considered while choosing satellite EO data, and making effective use of them. This is an important issue, especially for non-specialized users. Hamm et al. [26] proposed that spatio-temporal scales, uncertainty, spatial quality of EO data and the interaction between uncertainty in EO and disease data should be considered when using EO data for the study of neglected tropical diseases (NTD) (e.g., echinococcosis, schistosomiasis and leptospirosis). This is useful for evaluating EO data in dengue research.

4. Possible Future Directions: Landscape Patterns, Satellite Sensors and Deep Learning

4.1. In Terms of Landscape Patterns

More in-depth landscape features (e.g., compositional and configurational patterns) could be explored in future studies. Our previous studies characterized forest/non-forest landscapes by computing various landscape metrics and established their links with malaria cases for understanding the contribution of Amazon deforestation on human–vector contact [28,29]. We found very few examples that used landscape metrics in dengue epidemiology, although these metrics have been widely applied in the assessment of LULC changes.

4.2. In Terms of Satellite Sensors

LU/LC mapping has continued to be an important research area in recent years, in particular urban LU/LC mapping. Gong et al. [30] proposed the two-level essential urban land use categories (EULUC) and archived the preliminary results of 30 m in China for 2018 using Sentinel-2 images, Luojia night time light data, mobile phone locating request data and point of interests (POI) data. According to our findings (Figure 3), EULUC classes were mostly related to dengue transmission (e.g., residential, commercial, industrial and transportation). Global essential urban land use maps with fine spatial resolution could be useful for landscape-related studies of dengue. Moreover, developing LU/LC maps and integrating them for dengue research in tropical and subtropical regions is difficult due to the presence of clouds and cloud shadows. Synthetic aperture radar (SAR) images could penetrate such barriers and have recently been used for vector-borne disease application [31,32]. However, we found no specific study that used SAR data in dengue research. Third, deep learning frameworks have been increasingly used to predict dengue outbreaks. Many studies have used weather data (e.g., temperature, wind speed, precipitation, humidity), population data and previous dengue cases in deep learning models [33,34].

4.3. In Terms of Deep Learning

More recently, one study extracted landscape features (e.g., building, roads, trees, crops, waterway and standing water) from high resolution satellite EO data using CNN models and transfer learning, and added them into time series prediction of dengue outbreaks based on weather data and population density for improving the performance of prediction [35]. This would be a new direction that is practical for identifying the landscape factors with limited labelled data, understanding the landscape–dengue relationships or improving the deep learning-based temporal prediction of dengue risk.

5. Conclusions

Satellite EO has been increasingly used in dengue research over the past years, especially for the identification of dengue landscape factors. During that time, various types of landscape factors were considered while the study areas and research objectives have become more complex, and the variety and volume of satellite EO data have been growing over these years. There is an increasing need to know what dengue landscape factors have been studied and what dengue landscape factors have been derived from satellite EO data during the past years. In this study, by integrating the review process, AL mechanism, text scoring and BiLSTM model, we propose a semi-supervised text classification framework that enables the efficient evaluation of bibliographic records derived from bibliographic databases and accurately selects the articles relevant to the research objective. In this study, 101 relevant articles were efficiently selected from bibliographic databases using the proposed approach. Among them, 64 articles used satellite EO data. Valuable information on dengue landscape factors and current satellite EO data was reported. A catalogue of essential dengue landscape factors were identified that were divided into four categories: LU, LC, topography and continuous land surface features. These factors were considered as the direct or indirect proxies of Aedes breeding and resting sites, human–Aedes encounters, human mobility and virus replication in dengue transmission. Moreover, future research directions on how to integrate satellite EO data in dengue research were proposed in terms of landscape patterns, satellite sensors and deep learning. This study is an important step towards an efficient method for research evidence synthesis that could be easily applied to other topics, particularly in an interdisciplinary context.

Author Contributions

Z.L.: conceptualization, methodology, data analysis, funding acquisition, writing the original manuscript and reviewing the bibliography; H.G.: data analysis and reviewing the manuscript; L.H.: data analysis and reviewing the manuscript; L.X.: reviewing the manuscript; N.D.: reviewing the manuscript; P.G.: conceptualization, methodology and reviewing the manuscript. All authors have read and approved the final manuscript.

Funding

This research was supported by the National Natural Science Foundation of China (NSFC) (Project no.: 41801336). This research was also partially supported by a donation from Delos Living LLC to Tsinghua University.

Conflicts of Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Appendix A. Board Searches

Table A1. Search terms and number of records derived from bibliographic databases.
Table A1. Search terms and number of records derived from bibliographic databases.
No.Search TermsWSSDScopusPubMed
1dengue AND dwelling26676619
2dengue AND earth observation13043
3dengue AND habitation3732211
4dengue AND household61854101282
5dengue AND land cover11443120
6dengue AND land use11641512035
7dengue AND landscape1791110170
8dengue AND precipitation23830175125
9dengue AND remote sensing117105625
10dengue AND satellite.112115641
11dengue AND temperature19761451120748
12Aedes AND dwelling733813952
13Aedes AND earth observation11132
14Aedes AND habitation8833814
15Aedes AND household55131430187
16Aedes AND land cover26644639
17Aedes AND land use32321920346
18Aedes AND landscape295915395
19Aedes AND precipitation33221197127
20Aedes AND remote sensing13305424
21Aedes AND satellite124136846
22Aedes AND temperature34431711616824

Appendix B. Word Embedding

Word2Vec [24] is based on deep learning, which could learn grammar and semantic information from a large amount of unlabelled data. Word2Vec Continuous Bag-Of-Words Model (CBOW) model maps each word to a V-dimensional word vector by training, and can calculate the similarity between word vectors to represent the semantic similarity of the text. Word2Vec CBOW architecture predicts the current word based on the context. The input layer here is composed of one-hot encoded input contexts X1,...,Xc, where the window size is C, the glossary size is V and the hidden layer is an N-dimensional vector. The final output layer is the output word y that is also encoded by one-hot. The input vector encoded by one-hot is connected to the hidden layer by a V × N-dimensional weight matrix W and the hidden layer is connected to the output layer by an N × V weight matrix W′.

Appendix C. Bidirectional Long Short-Term Memory Model

Generally, LSTM-based RNNs consist of three gates: one input gate it with corresponding weight matrix Wxi, Whi, Wci, bi; one forget gate ft with corresponding weight matrix Wxf, Whf, Wcf, bf; one output gate ot with corresponding weight matrix Wxo, Who, Wco, bo. The operation can be summarized as the process of forgetting old information and memorizing new information in the state of the cell, so that information useful for subsequent process operations is passed, and useless information is discarded. The hidden layer state hi is output at each time step. In the process, all gates are set to generate some parameters, using current input xi, the state hi-1 that the previous step generated, and current state of this cell ci-1 (peephole), for the decisions whether to take the inputs, forget the memory stored before, and output the state generated later. The computation can be explained by the following equations:
i t = σ ( W x i x t + W h i h t 1 + W c i c t 1 + b i )
f t = σ ( W x f x t + W h f h t 1 + W c f c t 1 + b f )
g t = t a n h ( W x c x t + W h c h t 1 + W c c c t 1 + b c )
c t = i t g t + f t c t 1
o t = σ ( W x o x t + W h o h t 1 + W c o c t + b o )
h t = o t t a n h ( c t )
The BiLSTM uses two independent LSTMs to process the data in both directions and then connects the two final output vectors from both directions.

Appendix D. List of Articles Derived from the Semi-Supervised Text Classification Framework. Reference List was Alphabetized by the Last Name of the First Author of Each Work. References by the Same Author were Listed Chronologically with the Earliest Work First

Table A2. Satellite EO data and dengue landscape factors extracted each of the 101 relevant articles derived from the semi-supervised framework of literature.
Table A2. Satellite EO data and dengue landscape factors extracted each of the 101 relevant articles derived from the semi-supervised framework of literature.
ID [Ref.]First Author/YearTitleEO DataLandscape Factors
1 [36]Acharya et al., 2018 Temporal Variations and Associated Remotely Sensed Environmental Variables of Dengue Fever in Chitwan District, NepalMODISMOD13C25NDVI, EVI
MODISMYD11C3nLST, dLST
9 [37]Acharya et al., 2018Modeling the spatially varying risk factors of dengue fever in Jhapa district, Nepal, using the semi-parametric geographically weighted regression modelLandsat 8 OLI/TIRSThermal bandLST
Landsat 8 OLI/TIRSG, R, NIR, SWIRNDVI, NDWI, NDBI
2 [38]Akter et al., 2017Socio-demographic, ecological factors and dengue infection trends in Australia- -
3 [39]Albrieu-Llinas et al., 2018Urban environmental clustering to assess the spatial dynamics of Aedes aegypti breeding sitesSPOT 5Spectral bandsBare soil, Water, Wetlands, Grass, Tree, Built-up
LandsatNIR, SWIR, TIRNBRT
4 [40]Ali and Ahmad, 2018Using analytic hierarchy process with GIS for Dengue risk mapping in Kolkata Municipal Corporation, West Bengal, IndiaSRTM (SIR-C)SRTM DEMElevation
Sentinel 2Spectral bandsBare soil, Water, Vegetation, Built-up
Landsat 7 ETM+Thermal bandLST
5 [41]Anno et al., 2015Space-time clustering characteristics of dengue based on ecological, socio-economic and demographic factors in northern Sri LankaALOS/AVNIR-2B, G, R, NIRUrbanization ratio
6 [42]Araujo et al., 2014Sao Paulo urban heat islands have a higher incidence of dengue than other urban areasLandsat 5 TMThermal bandLST
Landsat 5 TMNIRVegetation
7 [43]Arboleda et al., 2009Mapping Environmental Dimensions of Dengue Fever Transmission Risk in the Aburra Valley, ColombiaSRTM (SIR-C)SRTM DEMElevation, Aspect, Slope
Landsat 7 ETM +R, NIRNDVI
Landsat 7 ETM +Spectral bandsB, G, R, NIR, SWIR1, SWIR 2, Thermal band
8 [44]Arboleda et al., 2011Spatial and temporal dynamics of Aedes aegypti larval sites in Bello, ColombiaSRTM (SIR-C)SRTM DEMSlope, Aspect, Slope
Landsat 7 ETM +R, NIRNDVI
Landsat 7 ETM +Spectral bandsB, G, R, NIR, SWIR1, SWIR 2, Thermal band
10 [45]Ashby et al., 2017Niche Modeling of Dengue Fever Using Remotely Sensed Environmental Factors and Boosted Regression TreesMODISMYD11A1nLST, dLST
MODISMYD09GQEVI
SRTM (SIR-C)SRTM DEMElevation
MODISMCD12Q1Bare soil, Cropland, Forest, Savanna, Urban, Wetlands, Shrubland
11 [46]Attaway et al., 2016Risk analysis for dengue suitability in Africa using the ArcGIS predictive analysis tools (PA tools)---
12 [47]Aziz, S. et al. (2014)Spatial density of Aedes distribution in urban areas: A case study of Breteau index in Kuala Lumpur, MalaysiaSPOT 5-Water, Built-up, Sparse vegetation, Dense vegetation, Cleared area
13 [48]Beilhe, Leila Bagny et al. (2012)Spread of invasive Aedes albopictus and decline of resident Aedes aegypti in urban areas of Mayotte 2007–2010---
14 [49]Bett, Bernard et al. (2019)Spatiotemporal analysis of historical records (2001–2012) on dengue fever in Vietnam and development of a statistical model for forecasting risk.MODISMCD12Q1Forest, Woodland, Grass, Shrub, Cropland, Built-up, Wetlands
15 [50]Bhardwaj et al. (2012)Developing a statistical dengue risk prediction model for the state of Delhi based on various environmental variablesLandsat 7 ETM+ -Built-up, Vegetation
16 [51]Buczak et al. (2012)A data-driven epidemiological prediction method for dengue outbreaks using local and remote sensing dataMODIS-NDVI, EVI
17 [52]Buczak et al. (2014)Prediction of High Incidence of Dengue in the PhilippinesMODIS-NDVI, EVI
18 [53]Butt et al. (2019)Towards a Web GIS-based approach for mapping a dengue outbreakLandsat 5 TMTIRLST
Landsat 5 TMR, NIRNDVI
Landsat 5 TMSpectral bandsBuilt-up, Vegetation, Water, Bare soil, Mixed areas
19 [54]Cao et al. (2017)Individual and Interactive Effects of Socio-Ecological Factors on Dengue Fever at Fine Spatial Scale: A Geographical Detector-Based AnalysisMODISMOD13A3NDVI, VFC
Landsat 8 OLI/Quickbird -Urban villages
20 [55]Carbajo et al. (2001)Dengue transmission risk maps of Argentina---
22 [56]Chen et al. (2018)Neighborhood level real-time forecasting of dengue cases in tropical urban Singapore---
21 [57]Chen et al. (2019)Spatiotemporal Transmission Patterns and Determinants of Dengue Fever: A Case Study of Guangzhou, ChinaSPOT 5/Baidu mapPanchromatic and spectral bandsRoad, Subway, Ponds, Residential areas
23 [58]Cheong et al. (2014)Assessment of land use factors associated with dengue cases in Malaysia using Boosted Regression TreesLandsat 7 ETM +/SPOT 4-Residential areas, Agricultural areas, Forest, Water, Mixed horticulture, Open land, Rubber, Oil palm, Swamp forest, Mining, Orchard
24 [59]Chiu et al. (2014)A probabilistic spatial dengue fever risk assessment by a threshold-based-quantile regression method---
25 [60]Chuang et al. (2018)Epidemiological Characteristics and Space-Time Analysis of the 2015 Dengue Outbreak in the Metropolitan Region of Tainan City, Taiwan---
26 [61]Cox et al. (2007)Habitat segregation of dengue vectors along an urban environmental gradientLandsat 7 ETM +-Urban, Suburban, Rural, Forest, High density housing, Low density housing
27 [62]Dhewantara, Pandji Wibawa et al. (2019)Spatial and temporal variation of dengue incidence in the island of Bali, Indonesia: An ecological studyASTERGDEMElevation
28 [63]Dom et al. (2013)Coupling of remote sensing data and environmental-related parameters for dengue transmission risk assessment in Subang Jaya, MalaysiaIKONOS-Residential areas, Industrial areas, Commercial areas, Open area
30 [64]Espinosa et al.(2016)Temporal Dynamics and Spatial Patterns of Aedes aegypti Breeding Sites, in the Context of a Dengue Control Program in Tartagal (Salta Province, Argentina)SPOT 5Spectral bandsWater, High vegetation, Low vegetation, Cropland, Bare soil, Urban area
29 [65]Espinosa et al., 2018Operational satellite-based temporal modelling of Aedes population in ArgentinaMODISMOD13Q1NDVI, NDWI
MODISMOD11A2dLST, nLST
31 [66]Estallo et al. (2016)MODIS Environmental Data to Assess Chikungunya, Dengue, and Zika Diseases Through Aedes (Stegomia) aegypti Oviposition Activity EstimationMODISMOD13Q1NDVI
MODISMOD11A2dLST
32 [67]Fareed et al. (2016)Spatio-Temporal Extension and Spatial Analyses of Dengue from Rawalpindi, Islamabad and Swat during 2010–2014ASTERGDEMElevation, Drainage network
Landsat 4 TM,
Landsat 5 TM,
Landsat 7 ETM+, and Landsat 8 OLI
Spectral bandsBare soil, Built-up, Water, Vegetation, Construction area
33 [68]Fatima, Syeda Hira et al. (2016)Species Distribution Modelling of Aedes aegypti in two dengue-endemic regions of PakistanSRTM (SIR-C)SRTM DEMElevation
Landsat 8 OLI-Vegetation, Water, Built-up, Road
35 [69]Fuller et al. (2009)El Nino Southern Oscillation and vegetation dynamics as predictors of dengue fever cases in Costa Rica.MODISMOD13C1EVI, NDVI
34 [70]Fuller et al. (2010)Dengue vector (Aedes aegypti) larval habitats in an urban environment of Costa Rica analysed with ASTER and QuickBird imageryQuickbird-Built-up, Tree
36 [71]Garcia et al. (2011)An examination of the spatial factors of dengue cases in Quezon City, Philippines: A Geographic Information System (GLS)-based approach, 2005–2008---
37 [72]German et al. (2018)Exploring satellite based temporal forecast modelling of Aedes aegypti oviposition from an operational perspectiveMODISMOD13Q1NDVI, NDWI,
MODISMOD11A2nLST, dLST
38 [73]Hira et al. (2018)Patterns of occurrence of dengue and chikungunya, and spatial distribution of mosquito vector Aedes albopictus in Swabi district, PakistanSRTM (SIR-C)SRTM DEMElevation
39 [74]Huang et al. (2018)Spatial Clustering of Dengue Fever Incidence and Its Association with Surrounding GreennessMODISMxD09A1NDVI
40 [75]Husnina et al. (2019)Forest cover and climate as potential drivers for dengue fever in Sumatra and Kalimantan 2006–2016: a spatiotemporal analysis---
41 [76]Kesetyaningsi et al. (2018)Determination of environmental factors affecting dengue incidence in Sleman District, Yogyakarta, IndonesiaQuickbird-Vegetation
43 [77]Khalid and Ghaffar. (2014)Dengue transmission based on urban environmental gradients in different cities of PakistanSRTM (SIR-C)SRTM DEMFlow accumulation, Stream feature, Drainage density
SPOT 5/Landsat TMSpectral bandsUrban area, Bare soil, Forest, Water, Vegetation, Wedged land, Waterlogged land, Dry bare land, Rocky bare land, Deserted land
42 [78]Khalid and Ghaffar. (2015)Environmental risk factors and hotspot analysis of dengue distribution in PakistanSRTM (SIR-C)SRTM DEMDrainage
44 [79]Khormi and Kumar. (2011)Modeling dengue fever risk based on socioeconomic parameters, nationality and age groups: GIS and remote sensing based case studySPOT 5-Quality of neighborhood
45 [80]Koyadun et al. (2012)Ecologic and sociodemographic risk determinants for dengue transmission in urban areas in Thailand.---
46 [81]Lana et al. (2017)The introduction of dengue follows transportation infrastructure changes in the state of Acre, Brazil: A network-based analysis---
47 [82]Landau and Leeuwen. (2012)Fine scale spatial urban land cover factors associated with adult mosquito abundance and risk in Tucson, ArizonaNAIP aerial image/LiDAR elevation Spectral bands Bare soil, Pavement, Structure, Pool, Water (ponds and lakes), Grass, Shrub, Tree
48 [83]Lee et al. (2019)Human Activities Attract Harmful Mosquitoes in a Tropical Urban Landscape.---
49 [84]Li et al. (2013)Abiotic Determinants to the Spatial Dynamics of Dengue Fever in GuangzhouMODISMOD13Q1Cropland, Built-up, Construction area, Vegetation, Water
50 [85]Lian, Cheah Whye et al. (2006)Spatial, environmental and entomological risk factors analysis on a rural dengue outbreak in Lundu District in Sarawak, Malaysia---
51 [86]Lippi et al. (2019)Geographic shifts in Aedes aegypti habitat suitability in Ecuador using larval surveillance data and ecological niche modeling: Implications of climate change for public health vector control---
52 [87]Little et al. (2011)Co-occurrence Patterns of the Dengue Vector Aedes aegypti and Aedes mediovitattus, a Dengue Competent Mosquito in Puerto RicoWorldView 2Spectral bandsBare soil, Grass, Scrub, Tree, Urban area
53 [88]Little et al. (2017)Local environmental and meteorological conditions influencing the invasive mosquito Ae. albopictus and arbovirus transmission risk in New York City---
54 [89]Little et al. (2017)Socio-Ecological Mechanisms Supporting High Densities of Aedes albopictus (Diptera: Culicidae) in Baltimore, MDLandsatR, NIRNDVI
55 [90]Liu et al. (2018)Spatiotemporal patterns and determinants of dengue at county level in China from 2005–2017---
56 [91]Lozano-Fuentes et al. (2012) The Dengue Virus Mosquito Vector Aedes aegypti at High Elevation in Mexico---
57 [5]Machault et al., 2014Mapping Entomological Dengue Risk Levels in Martinique Using High-Resolution Remote-Sensing Environmental DataGeoeye-1Spectral bandsNDVI, MNDWI, ANDWI
Geoeye-1Spectral bandsSparsely vegetated soil, Grass, Asphalt
58 [92]Mahabir et al. (2012)Impact of road networks on the distribution of dengue fever cases in Trinidad, West Indies---
59 [93]Mahmood et al. (2019)Spatiotemporal analysis of dengue outbreaks in Samanabad town, Lahore metropolitan area, using geospatial techniques---
60 [94]Mala and Jat. (2018)Implications of meteorological and physiographical parameters on dengue fever occurrences in DelhiLandsat 7 ETM+, Landsat 8 OLI,
IRS-P6, Sentinel-2
Panchromatic and spectral bandsBuilt-up, Water, Vegetation
61 [95]Martinez-Bello et al. (2017)Spatiotemporal modeling of relative risk of dengue disease in ColombiaMODISMOD11A2LST
MODISMOD13Q1NDVI
62 [96]Martinez-Bello et al. (2017)Relative risk estimation of dengue disease at small spatial scaleMODISMOD11A2LST
Landsat 7 ETM+, Landsat 8 OLIR, NIRNDVI
63 [97]McClure et al. (2018)Land Use and Larval Habitat Increase Aedes albopictus (Diptera: Culicidae) and Culex quinquefasciatus (Diptera: Culicidae) Abundance in Lowland HawaiiQuickbird-Developed land
64 [98]Messina et al. (2019)The current and future global distribution and population at risk of dengue---
65 [99]Murdock et al. (2017)Fine-scale variation in microclimate across an urban landscape shapes variation in mosquito population dynamics and the potential of Aedes albopictus to transmit arboviral disease---
66 [100]Nakhapakorn and Tripathi. (2005)An information value based analysis of physical and climatic factors affecting dengue fever and dengue haemorrhagic fever incidenceLandsat TM-Agricultural areas, Forest, Water, Built-up
67 [101]Nejati et al. (2017)Potential Risk Areas of Aedes albopictus in South-Eastern Iran: A Vector of Dengue Fever, Zika, and ChikungunyaASTERASTER DEMElevation
Landsat 8 OLIR, NIRNDVI
Landsat 8 OLISpectral bandsWater, Urban area (residential), Rural area (residential)
68 [102]Nitatpattana et al. (2007)Potential association of dengue hemorrhagic fever incidence and remote senses land surface temperature, Thailand, 1998National Oceanic and Atmospheric Administration-14-LST
69 [103]Ogashawara et al. (2019)Spatial-Temporal Assessment of Environmental Factors Related to Dengue Outbreaks in São Paulo, BrazilLandsat 8 TIRSThermal bandsLST
Landsat 8 OLI Spectral bandsNDVI, NDWI, NDBI
70 [104]Pineda-Cortel et al. (2019)Modeling and predicting dengue fever cases in key regions of the Philippines using remote sensing dataMODISMOD11C3nLST, dLST
MODISMOD13Q1NDVI
71 [105]Qu et al. (2018)Effects of socio-economic and environmental factors on the spatial heterogeneity of dengue fever investigated at a fine scale---
72 [106]Qureshi et al. (2017)The distribution of Aedes aegypti (diptera, culicidae) in eight selected parks of Lahore, using oviposition traps during rainy season---
73 [107]Rahm et al. (2016)Forecasting of Dengue Disease Incident Risks Using Non-stationary Spatial of Geostatistics Model in Bone Regency Indonesia---
74 [108]Ren et al. (2019)Urban villages as transfer stations for dengue fever epidemic: A case study in Guangzhou, ChinaZY-3 Panchromatic and spectral bandsNormal construction areas, Urban villages, Water, Vegetation, Unused land
75 [109]Restrepo et al. (2014)National spatial and temporal patterns of notified dengue cases, Colombia 2007–2010---
76 [110]Richards et al. (2006)Spatial analysis of Aedes albopictus (Diptera: Culicidae) oviposition in suburban neighborhoods of a piedmont community in North Carolina---
77 [111]Rogers et al. (2014)Using global maps to predict the risk of dengue in EuropeMODIS-nLST, dLST
MODIS-NDVI, EVI
78 [112]Rosa-Freitas et al. (2010)Dengue and land cover heterogeneity in Rio de Janeiro---
79 [113]Rotela et al. (2007)Space-time analysis of the dengue spreading dynamics in the 2004 Tartagal outbreak, Northern ArgentinaLandsat 5 TMSpectral bandsRoad, River, Street, Vegetation
Landsat 5 TMSpectral bandsTCB, TCG, TCW, Landsat bands (7 to 13)
80 [114]Saravanabavan et al. (2019)Identification of dengue risk zone: a geo-medical study on Madurai city---
82 [115]Sarfraz et al. (2012)Analyzing the spatio-temporal relationship between dengue vector larval density and land-use using factor analysis and spatial ring mapping---
81 [116]Sarfraz et al. (2014)Near real-time characterisation of urban environments: a holistic approach for monitoring dengue fever risk areasALOS AVNIR-2Spectral bandsBuilt-up, Vegetation, Water, Bare soil, Road, Institution, Religious areas, Market
83 [117]Sarfraz et al. (2014)Mapping urban and peri-urban breeding habitats of Aedes mosquitoes using a fuzzy analytical hierarchical process based on climatic and physical parametersSRTM (SIR-C)SRTM DEMElevation
MODISMYD11C3dLST, nLST
84 [118]Scavuzzo et al. (2018)Modeling Dengue vector population using remotely sensed data and machine learningMODISMOD13Q1NDVI, NDWI
MODISMOD11A2nLST, dLST
85 [119]Shafie (2011)Evaluation of the Spatial Risk Factors for High Incidence of Dengue Fever and Dengue Hemorrhagic Fever Using GIS Application---
86 [120]Sheela et al. (2015)Assessment of changes of vector borne diseases with wetland characteristics using multivariate analysisIRSP6 LISSIII-Wetlands, Inland areas, Inland waterlogged areas, Inland river, Inland man made ponds, Inland reservoirs, Coastal lagoons, Coastal beaches and creek, Aquatic vegetation, Turbidity
87 [121]Sheela et al. (2017)Assessment of relation of land use characteristics with vector-borne diseases in tropical areas---
88 [122]Stanforth et al., (2016)Exploratory Analysis of Dengue Fever Niche Variables within the Rio Magdalena WatershedMODISMYD11A1LST
MODISMYD09GQEVI
SRTM (SIR-C)SRTM DEMElevation
MODISMCD12Q1Bare soil, Cropland, Forest, Urban
89 [123]Tariq and Zaidi. (2019)Geostatistical modeling of dengue disease in Lahore, PakistanSPOT 5Spectral bandsNDVI, NDWI
Landsat 5 TMSpectral bandsLST
90 [124]Teurlai et al. (2015)Socio-economic and Climate Factors Associated with Dengue Fever Spatial Heterogeneity: A Worked Example in New Caledonia---
91 [125]Tian et al. (2016)Surface water areas significantly impacted 2014 dengue outbreaks in Guangzhou, ChinaLandsat 4 TM,
Landsat 5 TM,
Landsat 7 ETM+, and Landsat 8 OLI
Spectral bandsWater
92 [126]Tiong et al. (2015)Evaluation of land cover and prevalence of dengue in Malaysia---
93 [127]Tipayamongkholgul and Lisakulruk. (2011)Socio-geographical factors in vulnerability to dengue in Thai villages: a spatial regression analysis---
94 [128]Troyo et al. (2009)Urban structure and dengue fever in Puntarenas, Costa Rica.MODIS-EVI
ASTER Spectral bandsNDVI
QuickbirdPanchrmatic and spectral bandsBuilt-up, Tree
95 [129]Tsuda et al. (2006)Different spatial distribution of Aedes aegypti and Aedes albopictus along an urban-rural gradient and the relating environmental factors examined in three villages in northern Thailand---
96 [130]Van Benthem et al. (2005)Spatial patterns of and risk factors for seropositivity for dengue infectionLandsat 2000-Vegetation, Built-up, Cropland
97 [131]Vanwambeke et al. (2006)Multi-level analyses of spatial and temporal determinants for dengue infectionLandsat 2000-Orchard, Water, Bare soil, Village areas, Agricultural areas
98 [132]Vezzani et al. (2005)Detailed assessment of microhabitat suitability for Aedes aegypti (Diptera: Culicidae) in Buenos Aires, Argentina---
99 [133]Wiese et al. (2019)Integrating environmental and neighborhood factors in MaxEnt modeling to predict species distributions: A case study of Aedes albopictus in southeastern PennsylvaniaMODISMOD13Q1EVI
MODISMOD09Q1NDWI
SRTM (SIR-C)SRTM DEMElevation, Slope, Flow accumulation
100 [134]Yue et al. (2018)Spatial analysis of dengue fever and exploration of its environmental and socio-economic risk factors using ordinary least squares: A case study in five districts of Guangzhou City, China, 2014GaoFen-1Spectral bandsNDWI
GaoFen-1Spectral bandsWater, Vegetation, Built-up
MODISMOD11A2nLST, dLST
101 [135]Zheng et al. (2019)Spatiotemporal characteristics and primary influencing factors of typical dengue fever epidemics in China---

References

  1. WHO. Dengue and Severe Dengue. Available online: https://www.who.int/news-room/fact-sheets/detail/dengue-and-severe-dengue (accessed on 1 June 2020).
  2. Horstick, O.; Tozan, Y.; Wilder-Smith, A. Reviewing dengue: Still a neglected tropical disease? PLoS Negl. Trop. Dis. 2015, 9, e0003632. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  3. Messina, J.P.; Pan, W.K. Different ontologies: Land change science and health research. Curr. Opin. Environ. Sustain. 2013, 5, 515–521. [Google Scholar] [CrossRef] [Green Version]
  4. Patz, J.A.; Olson, S.H.; Uejio, C.K.; Gibbs, H.K. Disease emergence from global climate and land use change. Med. Clin. N. Am. 2008, 92, 1473–1491. [Google Scholar] [CrossRef] [PubMed]
  5. Machault, V.; Yébakima, A.; Etienne, M.; Vignolles, C.; Palany, P.; Tourre, Y.; Guérécheau, M.; Lacaux, J.-P. Mapping Entomological Dengue Risk Levels in Martinique Using High-Resolution Remote-Sensing Environmental Data. ISPRS Int. J. Geo Inf. 2014, 3, 1352–1371. [Google Scholar] [CrossRef] [Green Version]
  6. LaDeau, S.L.; Allan, B.F.; Leisnham, P.T.; Levy, M.Z. The ecological foundations of transmission potential and vector-borne disease in urban landscapes. Funct. Ecol. 2015, 29, 889–901. [Google Scholar] [CrossRef] [Green Version]
  7. Parselia, E.; Kontoes, C.; Tsouni, A.; Hadjichristodoulou, C.; Kioutsioukis, I.; Magiorkinis, G.; Stilianakis, N.I. Satellite Earth Observation Data in Epidemiological Modeling of Malaria, Dengue and West Nile Virus: A Scoping Review. Remote Sens. 2019, 11, 1862. [Google Scholar] [CrossRef] [Green Version]
  8. Sallam, M.F.; Fizer, C.; Pilant, A.N.; Whung, P.Y. Systematic Review: Land Cover, Meteorological, and Socioeconomic Determinants of Aedes mosquito Habitat for Risk Mapping. Int. J. Environ. Res. Public Health 2017, 14, 1230. [Google Scholar] [CrossRef] [Green Version]
  9. Marti, R.; Li, Z.; Catry, T.; Roux, E.; Mangeas, M.; Handschumacher, P.; Gaudart, J.; Tran, A.; Demagistri, L.; Faure, J.-F.; et al. A Mapping Review on Urban Landscape Factors of Dengue Retrieved from Earth Observation Data, GIS Techniques, and Survey Questionnaires. Remote Sens. 2020, 12, 932. [Google Scholar] [CrossRef] [Green Version]
  10. Tricco, A.C.; Lillie, E.; Zarin, W.; O’Brien, K.K.; Colquhoun, H.; Levac, D.; Moher, D.; Peters, M.D.J.; Horsley, T.; Weeks, L.; et al. PRISMA Extension for Scoping Reviews (PRISMA-ScR): Checklist and Explanation. Ann. Intern. Med. 2018, 169, 467–473. [Google Scholar] [CrossRef] [Green Version]
  11. Sucharew, H.; Macaluso, M. Progress Notes: Methods for Research Evidence Synthesis: The Scoping Review Approach. J. Hosp. Med. 2019, 14, 416–418. [Google Scholar] [CrossRef] [Green Version]
  12. Salton, G.; Buckley, C. Term-weighting approaches in automatic text retrieval. Inf. Process. Manag. 1988, 24, 513–523. [Google Scholar] [CrossRef] [Green Version]
  13. García Adeva, J.J.; Pikatza Atxa, J.M.; Ubeda Carrillo, M.; Ansuategi Zengotitabengoa, E. Automatic text classification to support systematic reviews in medicine. Expert Syst. Appl. 2014, 41, 1498–1508. [Google Scholar] [CrossRef]
  14. Bannach-Brown, A.; Przybyła, P.; Thomas, J.; Rice, A.S.C.; Ananiadou, S.; Liao, J.; Macleod, M.R. Machine learning algorithms for systematic review: Reducing workload in a preclinical review of animal studies and reducing human screening error. Syst. Rev. 2019, 8, 1–12. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  15. Tsafnat, G.; Glasziou, P.; Choong, M.K.; Dunn, A.; Galgani, F.; Coiera, E. Systematic review automation technologies. Syst. Rev. 2014, 3, 1–15. [Google Scholar] [CrossRef] [Green Version]
  16. Liu, G.; Guo, J. Bidirectional LSTM with attention mechanism and convolutional layer for text classification. Neurocomputing 2019, 337, 325–338. [Google Scholar] [CrossRef]
  17. Liao, S.; Wang, J.; Yu, R.; Sato, K.; Cheng, Z. CNN for situations understanding based on sentiment analysis of twitter data. Procedia Comput. Sci. 2017, 111, 376–381. [Google Scholar] [CrossRef]
  18. Cao, W.; Song, A.; Furuzuki, T. Stacked residual recurrent neural network with word weight for text classification. IAENG Int. J. Comput. Sci. 2017, 44, 277–284. [Google Scholar]
  19. Hochreiter, S.; Schmidhuber, J. Long Short-Term Memory. Neural Comput. 1997, 9, 1735–1780. [Google Scholar] [CrossRef]
  20. An, B.; Wu, W.; Han, H. Deep Active Learning for Text Classification. In Proceedings of the 2nd International Conference on Vision, Image and Signal Processing; ACM: New York, NY, USA, 2018; pp. 1–6. [Google Scholar] [CrossRef]
  21. Yang, L.; MacEachren, A.; Mitra, P.; Onorati, T. Visually-Enabled Active Deep Learning for (Geo) Text and Image Classification: A Review. ISPRS Int. J. Geo Inf. 2018, 7, 65. [Google Scholar] [CrossRef] [Green Version]
  22. Zhou, S.; Chen, Q.; Wang, X. Active deep learning method for semi-supervised sentiment classification. Neurocomputing 2013, 120, 536–546. [Google Scholar] [CrossRef]
  23. Schuster, M.; Paliwal, K.K. Bidirectional recurrent neural networks. IEEE Trans. Signal Process. 1997, 45, 2673–2681. [Google Scholar] [CrossRef] [Green Version]
  24. Mikolov, T.; Chen, K.; Corrado, G.; Dean, J. Efficient Estimation of Word Representations in Vector Space. In Proceedings of the International Conference on Learning Representations 2013, Scottsdale, AZ, USA, 2–4 May 2013. [Google Scholar]
  25. Zhou, C.; Sun, C.; Liu, Z.; Lau, F.C.M. A c-lstm neural network for text classification. Comput. Sci. 2015, 1, 39–44. [Google Scholar]
  26. Hamm, N.A.S.; Soares Magalhães, R.J.; Clements, A.C.A. Earth Observation, Spatial Data Quality, and Neglected Tropical Diseases. PLoS Negl. Trop. Dis. 2015, 9, e0004164. [Google Scholar] [CrossRef] [PubMed]
  27. Huete, A.; Didan, K.; Miura, T.; Rodriguez, E.P.; Gao, X.; Ferreira, L.G. Overview of the radiometric and biophysical performance of the MODIS vegetation indices. Remote Sens. Environ. 2002, 83, 195–213. [Google Scholar] [CrossRef]
  28. Li, Z.; Roux, E.; Dessay, N.; Girod, R.; Stefani, A.; Nacher, M.; Moiret, A.; Seyler, F. Mapping a Knowledge-Based Malaria Hazard Index Related to Landscape Using Remote Sensing: Application to the Cross-Border Area between French Guiana and Brazil. Remote Sens. 2016, 8, 319. [Google Scholar] [CrossRef] [Green Version]
  29. Li, Z.; Catry, T.; Dessay, N.; da Costa Gurgel, H.; Aparecido de Almeida, C.; Barcellos, C.; Roux, E. Regionalization of a Landscape-Based Hazard Index of Malaria Transmission: An Example of the State of Amapá, Brazil. Data 2017, 2, 37. [Google Scholar] [CrossRef] [Green Version]
  30. Gong, P.; Chen, B.; Li, X.; Liu, H.; Wang, J.; Bai, Y.; Chen, J.; Chen, X.; Fang, L.; Feng, S.; et al. Mapping essential urban land use categories in China (EULUC-China): Preliminary results for 2018. Sci. Bull. 2020, 65, 182–187. [Google Scholar] [CrossRef] [Green Version]
  31. Catry, T.; Pottier, A.; Marti, R.; Li, Z.; Roux, E.; Herbreteau, V.; Mangeas, M.; Demagistri, L.; Gurgel, H.; Dessay, N. Apports de la combinaison d’images satellites optique et RADAR dans l’étude des maladies à transmission vectorielle: Cas du paludisme à la frontière Guyane française–Brésil. Confins 2018, 37. [Google Scholar] [CrossRef]
  32. Catry, T.; Li, Z.; Roux, E.; Herbreteau, V.; Gurgel, H.; Mangeas, M.; Seyler, F.; Dessay, N. Wetlands and Malaria in the Amazon: Guidelines for the Use of Synthetic Aperture Radar Remote-Sensing. Int. J. Environ. Res. Public Health 2018, 15, 468. [Google Scholar] [CrossRef] [Green Version]
  33. Xu, J.; Xu, K.; Li, Z.; Meng, F.; Tu, T.; Xu, L.; Liu, Q. Forecast of Dengue Cases in 20 Chinese Cities Based on the Deep Learning Method. Int. J. Environ. Res. Public Health 2020, 17, 453. [Google Scholar] [CrossRef] [Green Version]
  34. Laureano-Rosario, A.E.; Duncan, A.P.; Mendez-Lazaro, P.A.; Garcia-Rejon, J.E.; Gomez-Carro, S.; Farfan-Ale, J.; Savic, D.A.; Muller-Karger, F.E. Application of Artificial Neural Networks for Dengue Fever Outbreak Predictions in the Northwest Coast of Yucatan, Mexico and San Juan, Puerto Rico. Trop. Med. Infect. Dis. 2018, 3, 5. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  35. Rehman, N.A.; Saif, U.; Chunara, R. Deep Landscape Features for Improving Vector-borne Disease Prediction. In Proceedings of the 2019 IEEE/CVF Conference on Computer Vision and Pattern Recongnition (CVPR), Long Beach, CA, USA, 15–20 June 2019. [Google Scholar]
  36. Acharya, B.K.; Cao, C.; Xu, M.; Khanal, L.; Naeem, S.; Pandit, S. Temporal Variations and Associated Remotely Sensed Environmental Variables of Dengue Fever in Chitwan District, Nepal. ISPRS Int. J. Geo Inf. 2018, 7, 275. [Google Scholar] [CrossRef] [Green Version]
  37. Acharya, B.K.; Cao, C.; Lakes, T.; Chen, W.; Naeem, S.; Pandit, S. Modeling the spatially varying risk factors of dengue fever in Jhapa district, Nepal, using the semi-parametric geographically weighted regression model. Int. J. Biometeorol. 2018, 62, 1973–1986. [Google Scholar] [CrossRef] [PubMed]
  38. Akter, R.; Naish, S.; Hu, W.; Tong, S. Socio-demographic, ecological factors and dengue infection trends in Australia. PLoS ONE 2017, 12, e0185551. [Google Scholar] [CrossRef] [PubMed]
  39. Albrieu-Llinas, G.; Espinosa, M.O.; Quaglia, A.; Abril, M.; Scavuzzo, C.M. Urban environmental clustering to assess the spatial dynamics of Aedes aegypti breeding sites. Geospat. Health 2018, 13, 135–142. [Google Scholar] [CrossRef] [PubMed]
  40. Ajim Ali, S.; Ahmad, A. Using analytic hierarchy process with GIS for Dengue risk mapping in Kolkata Municipal Corporation, West Bengal, India. Spat. Inf. Res. 2018, 26, 449–469. [Google Scholar] [CrossRef]
  41. Anno, S.; Imaoka, K.; Tadono, T.; Igarashi, T.; Sivaganesh, S.; Kannathasan, S.; Kumaran, V.; Surendran, S.N. Space-time clustering characteristics of dengue based on ecological, socio-economic and demographic factors in northern Sri Lanka. Geospat. Health 2015, 10. [Google Scholar] [CrossRef] [Green Version]
  42. Araujo, R.V.; Albertini, M.R.; Costa-da-Silva, A.L.; Suesdek, L.; Franceschi, N.C.; Bastos, N.M.; Katz, G.; Cardoso, V.A.; Castro, B.C.; Capurro, M.L.; et al. Sao Paulo urban heat islands have a higher incidence of dengue than other urban areas. Braz. J. Infect. Dis. 2015, 19, 146–155. [Google Scholar] [CrossRef] [Green Version]
  43. Arboleda, S.; Jaramillo-O, N.; Peterson, A.T. Mapping Environmental Dimensions of Dengue Fever Transmission Risk in the Aburrá Valley, Colombia. Int. J. Environ. Res. Public Health 2009, 6, 3040–3055. [Google Scholar] [CrossRef] [Green Version]
  44. Arboleda, S.; Jaramillo, O.N.; Peterson, A.T. Spatial and temporal dynamics of Aedes aegypti larval sites in Bello, Colombia. J. Vector Ecol. 2012, 37, 37–48. [Google Scholar] [CrossRef]
  45. Ashby, J.; Moreno-Madrinan, M.J.; Yiannoutsos, C.T.; Stanforth, A. Niche Modeling of Dengue Fever Using Remotely Sensed Environmental Factors and Boosted Regression Trees. Remote Sens. 2017, 9, 328. [Google Scholar] [CrossRef] [Green Version]
  46. Attaway, D.F.; Jacobsen, K.H.; Falconer, A.; Manca, G.; Waters, N.M. Risk analysis for dengue suitability in Africa using the ArcGIS predictive analysis tools (PA tools). Acta Trop. 2016, 158, 248–257. [Google Scholar] [CrossRef] [PubMed]
  47. Aziz, S.; Aidil, R.M.; Nisfariza, M.N.; Ngui, R.; Lim, Y.A.; Yusoff, W.S.; Ruslan, R. Spatial density of Aedes distribution in urban areas: A case study of breteau index in Kuala Lumpur, Malaysia. J. Vector Borne Dis. 2014, 51, 91–96. [Google Scholar] [PubMed]
  48. Bagny Beilhe, L.; Arnoux, S.; Delatte, H.; Lajoie, G.; Fontenille, D. Spread of invasive Aedes albopictus and decline of resident Aedes aegypti in urban areas of Mayotte 2007–2010. Biol. Invasions 2012, 14, 1623–1633. [Google Scholar] [CrossRef]
  49. Bett, B.; Grace, D.; Lee, H.S.; Lindahl, J.; Nguyen-Viet, H.; Phuc, P.D.; Quyen, N.H.; Tu, T.A.; Phu, T.D.; Tan, D.Q.; et al. Spatiotemporal analysis of historical records (2001–2012) on dengue fever in Vietnam and development of a statistical model for forecasting risk. PLoS ONE 2019, 14, e0224353. [Google Scholar] [CrossRef]
  50. Bhardwaj, A.; Sam, L.C.; Joshi, P.K.; Sinha, V.S.P. Developing a Statistical Dengue Risk Prediction Model for the State of Delhi Based on Various Environmental Variables. Int. J. Geoinform. 2012, 8, 45–52. [Google Scholar]
  51. Buczak, A.L.; Koshute, P.T.; Babin, S.M.; Feighner, B.H.; Lewis, S.H. A data-driven epidemiological prediction method for dengue outbreaks using local and remote sensing data. BMC Med. Inform. Decis. Mak. 2012, 12, 124. [Google Scholar] [CrossRef] [Green Version]
  52. Carvalho, M.S.; Buczak, A.L.; Baugher, B.; Babin, S.M.; Ramac-Thomas, L.C.; Guven, E.; Elbert, Y.; Koshute, P.T.; Velasco, J.M.S.; Roque, V.G.; et al. Prediction of High Incidence of Dengue in the Philippines. PLoS Negl. Trop. Dis. 2014, 8, e2771. [Google Scholar] [CrossRef]
  53. Butt, M.A.; Khalid, A.; Ali, A.; Mahmood, S.A.; Sami, J.; Qureshi, J.; Waheed, K.; Khalid, A. Towards a Web GIS-based approach for mapping a dengue outbreak. Appl. Geomat. 2019, 12, 121–131. [Google Scholar] [CrossRef]
  54. Cao, Z.; Liu, T.; Li, X.; Wang, J.; Lin, H.; Chen, L.; Wu, Z.; Ma, W. Individual and Interactive Effects of Socio-Ecological Factors on Dengue Fever at Fine Spatial Scale: A Geographical Detector-Based Analysis. Int. J. Environ. Res. Public Health 2017, 14, 795. [Google Scholar] [CrossRef] [Green Version]
  55. Carbajo, A.E.; Schweigmann, N.; Curto, S.I.; de Garin, A.; Bejaran, R. Dengue transmission risk maps of Argentina. Trop. Med. Int. Health 2001, 6, 170–183. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  56. Chen, Y.; Ong, J.H.Y.; Rajarethinam, J.; Yap, G.; Ng, L.C.; Cook, A.R. Neighbourhood level real-time forecasting of dengue cases in tropical urban Singapore. BMC Med. 2018, 16, 129. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  57. Chen, Y.; Zhao, Z.; Li, Z.; Li, W.; Li, Z.; Guo, R.; Yuan, Z. Spatiotemporal Transmission Patterns and Determinants of Dengue Fever: A Case Study of Guangzhou, China. Int. J. Environ. Res. Public Health 2019, 16, 2486. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  58. Cheong, Y.L.; Leitão, P.J.; Lakes, T. Assessment of land use factors associated with dengue cases in Malaysia using Boosted Regression Trees. Spat. Spatio Temporal Epidemiol. 2014, 10, 75–84. [Google Scholar] [CrossRef]
  59. Chiu, C.-H.; Wen, T.-H.; Chien, L.-C.; Yu, H.-L. A Probabilistic Spatial Dengue Fever Risk Assessment by a Threshold-Based-Quantile Regression Method. PLoS ONE 2014, 9, e106334. [Google Scholar] [CrossRef] [Green Version]
  60. Chuang, T.-W.; Ng, K.-C.; Nguyen, T.; Chaves, L. Epidemiological Characteristics and Space-Time Analysis of the 2015 Dengue Outbreak in the Metropolitan Region of Tainan City, Taiwan. Int. J. Environ. Res. Public Health 2018, 15, 396. [Google Scholar] [CrossRef] [Green Version]
  61. Cox, J.; Grillet, M.E.; Ramos, O.M.; Amador, M.; Barrera, R. Habitat segregation of dengue vectors along an urban environmental gradient. Am. J. Trop. Med. Hyg. 2007, 76, 820–826. [Google Scholar] [CrossRef]
  62. Dhewantara, P.W.; Marina, R.; Puspita, T.; Ariati, Y.; Purwanto, E.; Hananto, M.; Hu, W.; Soares Magalhaes, R.J. Spatial and temporal variation of dengue incidence in the island of Bali, Indonesia: An ecological study. Travel Med. Infect. Dis. 2019, 32, 101437. [Google Scholar] [CrossRef]
  63. Dom, N.C.; Ahmad, A.H.; Latif, Z.A.; Ismail, R.; Pradhan, B. Coupling of remote sensing data and environmental-related parameters for dengue transmission risk assessment in Subang Jaya, Malaysia. Geocarto Int. 2013, 28, 258–272. [Google Scholar] [CrossRef]
  64. Espinosa, M.; Weinberg, D.; Rotela, C.H.; Polop, F.; Abril, M.; Marcelo Scavuzzo, C. Temporal Dynamics and Spatial Patterns of Aedes aegypti Breeding Sites, in the Context of a Dengue Control Program in Tartagal (Salta Province, Argentina). PLoS Negl. Trop. Dis. 2016, 10, e0004621. [Google Scholar] [CrossRef]
  65. Espinosa, M.; Alvarez Di Fino, E.M.; Abril, M.; Lanfri, M.; Victoria Periago, M.; Marcelo Scavuzzo, C. Operational satellite-based temporal modelling of Aedes population in Argentina. Geospat. Health 2018, 13, 247–258. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  66. Lilia Estallo, E.; Benitez, E.M.; Alberto Lanfri, M.; Marcelo Scavuzzo, C.; Almiron, W.R. MODIS Environmental Data to Assess Chikungunya, Dengue, and Zika Diseases Through Aedes (Stegomia) aegypti Oviposition Activity Estimation. IEEE J. Sel. Top. Appl. Earth Obs. Remote Sens. 2016, 9, 5461–5466. [Google Scholar] [CrossRef]
  67. Fareed, N.; Ghaffar, A.; Malik, T.S. Spatio-Temporal Extension and Spatial Analyses of Dengue from Rawalpindi, Islamabad and Swat during 2010–2014. Climate 2016, 4, 23. [Google Scholar] [CrossRef] [Green Version]
  68. Fatima, S.H.; Atif, S.; Rasheed, S.B.; Zaidi, F.; Hussain, E. Species Distribution Modelling of Aedes aegypti in two dengue-endemic regions of Pakistan. Trop. Med. Int. Health 2016, 21, 427–436. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  69. Fuller, D.O.; Troyo, A.; Beier, J.C. El Niño Southern Oscillation and vegetation dynamics as predictors of dengue fever cases in Costa Rica. Environ. Res. Lett. 2009, 4, 014011. [Google Scholar] [CrossRef]
  70. Fuller, D.O.; Troyo, A.; Calderón-Arguedas, O.; Beier, J.C. Dengue vector (Aedes aegypti) larval habitats in an urban environment of Costa Rica analysed with ASTER and QuickBird imagery. Int. J. Remote Sens. 2010, 31, 3–11. [Google Scholar] [CrossRef]
  71. Garcia, F.B.; Liagas, L.A. An examination of the spatial factors of dengue cases in Quezon City, Philippines: A Geographic Information System (GLS)-based approach, 2005–2008. Acta Med. Philipp. 2011, 45, 53–62. [Google Scholar]
  72. German, A.; Espinosa, M.O.; Abril, M.; Scavuzzo, C.M. Exploring satellite based temporal forecast modelling of Aedes aegypti oviposition from an operational perspective. Remote Sens. Appl. Soc. Environ. 2018, 11, 231–240. [Google Scholar] [CrossRef]
  73. Hira, F.S.; Asad, A.; Farrah, Z.; Basit, R.S.; Mehreen, F.; Muhammad, K. Patterns of occurrence of dengue and chikungunya, and spatial distribution of mosquito vector Aedes albopictus in Swabi district, Pakistan. Trop. Med. Int. Health 2018, 23, 1002–1013. [Google Scholar] [CrossRef] [Green Version]
  74. Huang, C.C.; Tam, T.Y.T.; Chern, Y.R.; Lung, S.C.; Chen, N.T.; Wu, C.D. Spatial Clustering of Dengue Fever Incidence and Its Association with Surrounding Greenness. Int. J. Environ. Res. Public Health 2018, 15, 1869. [Google Scholar] [CrossRef] [Green Version]
  75. Husnina, Z.; Clements, A.C.A.; Wangdi, K. Forest cover and climate as potential drivers for dengue fever in Sumatra and Kalimantan 2006–2016: A spatiotemporal analysis. Trop. Med. Int. Health 2019, 24, 888–898. [Google Scholar] [CrossRef] [PubMed]
  76. Kesetyaningsih, T.W.; Andarini, S.; Sudarto, S.; Pramoedyo, H. Determination of Environmental Factors Affecting Dengue Incidence in Sleman District, Yogyakarta, Indonesia. Afr. J. Infect. Dis. 2018, 12, 13–35. [Google Scholar] [CrossRef] [Green Version]
  77. Khalid, B.; Ghaffar, A. Dengue transmission based on urban environmental gradients in different cities of Pakistan. Int. J. Biometeorol. 2014, 59, 267–283. [Google Scholar] [CrossRef]
  78. Khalid, B.; Ghaffar, A. Environmental risk factors and hotspot analysis of dengue distribution in Pakistan. Int. J. Biometeorol. 2015, 59, 1721–1746. [Google Scholar] [CrossRef] [PubMed]
  79. Khormi, H.M.; Kumar, L. Modeling dengue fever risk based on socioeconomic parameters, nationality and age groups: GIS and remote sensing based case study. Sci. Total Environ. 2011, 409, 4713–4719. [Google Scholar] [CrossRef] [PubMed]
  80. Koyadun, S.; Butraporn, P.; Kittayapong, P. Ecologic and Sociodemographic Risk Determinants for Dengue Transmission in Urban Areas in Thailand. Interdiscip. Perspect. Infect. Dis. 2012, 2012, 1–12. [Google Scholar] [CrossRef] [PubMed]
  81. Barrera, R.; Lana, R.M.; da Costa Gomes, M.F.; de Lima, T.F.M.; Honório, N.A.; Codeço, C.T. The introduction of dengue follows transportation infrastructure changes in the state of Acre, Brazil: A network-based analysis. PLoS Negl. Trop. Dis. 2017, 11, e0006070. [Google Scholar] [CrossRef]
  82. Landau, K.I.; van Leeuwen, W.J. Fine scale spatial urban land cover factors associated with adult mosquito abundance and risk in Tucson, Arizona. J. Vector Ecol. 2012, 37, 407–418. [Google Scholar] [CrossRef]
  83. Lee, J.M.; Wasserman, R.J.; Gan, J.Y.; Wilson, R.F.; Rahman, S.; Yek, S.H. Human Activities Attract Harmful Mosquitoes in a Tropical Urban Landscape. EcoHealth 2019, 17, 52–63. [Google Scholar] [CrossRef]
  84. Li, S.; Tao, H.; Xu, Y. Abiotic determinants to the spatial dynamics of dengue fever in Guangzhou. Asia Pac. J. Public Health 2013, 25, 239–247. [Google Scholar] [CrossRef]
  85. Cheah, W.L.; Chang, M.S.; Wang, Y.C. Spatial, environmental and entomological risk factors analysis on a rural dengue outbreak in Lundu District in Sarawak, Malaysia. Trop. Biomed. 2006, 23, 85–96. [Google Scholar] [PubMed]
  86. Lippi, C.A.; Stewart-Ibarra, A.M.; Loor, M.; Zambrano, J.E.D.; Lopez, N.A.E.; Blackburn, J.K.; Ryan, S.J. Geographic shifts in Aedes aegypti habitat suitability in Ecuador using larval surveillance data and ecological niche modeling: Implications of climate change for public health vector control. PLoS Negl. Trop. Dis. 2019, 13, e0007322. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  87. Little, E.; Barrera, R.; Seto, K.C.; Diuk-Wasser, M. Co-occurrence patterns of the dengue vector Aedes aegypti and Aedes mediovitattus, a dengue competent mosquito in Puerto Rico. Ecohealth 2011, 8, 365–375. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  88. Little, E.; Bajwa, W.; Shaman, J. Local environmental and meteorological conditions influencing the invasive mosquito Ae. albopictus and arbovirus transmission risk in New York City. PLoS Negl. Trop. Dis. 2017, 11, e0005828. [Google Scholar] [CrossRef] [Green Version]
  89. Little, E.; Biehler, D.; Leisnham, P.T.; Jordan, R.; Wilson, S.; LaDeau, S.L. Socio-Ecological Mechanisms Supporting High Densities of Aedes albopictus (Diptera: Culicidae) in Baltimore, MD. J. Med. Entomol. 2017, 54, 1183–1192. [Google Scholar] [CrossRef] [Green Version]
  90. Liu, K.; Sun, J.; Liu, X.; Li, R.; Wang, Y.; Lu, L.; Wu, H.; Gao, Y.; Xu, L.; Liu, Q. Spatiotemporal patterns and determinants of dengue at county level in China from 2005–2017. Int. J. Infect. Dis. 2018, 77, 96–104. [Google Scholar] [CrossRef] [Green Version]
  91. Lozano-Fuentes, S.; Hayden, M.H.; Welsh-Rodriguez, C.; Ochoa-Martinez, C.; Tapia-Santos, B.; Kobylinski, K.C.; Uejio, C.K.; Zielinski-Gutierrez, E.; Monache, L.D.; Monaghan, A.J.; et al. The dengue virus mosquito vector Aedes aegypti at high elevation in Mexico. Am. J. Trop. Med. Hyg. 2012, 87, 902–909. [Google Scholar] [CrossRef] [Green Version]
  92. Mahabir, R.S.; Severson, D.W.; Chadee, D.D. Impact of road networks on the distribution of dengue fever cases in Trinidad, West Indies. Acta Trop. 2012, 123, 178–183. [Google Scholar] [CrossRef]
  93. Mahmood, S.; Irshad, A.; Nasir, J.M.; Sharif, F.; Farooqi, S.H. Spatiotemporal analysis of dengue outbreaks in Samanabad town, Lahore metropolitan area, using geospatial techniques. Environ. Monit. Assess. 2019, 191, 55. [Google Scholar] [CrossRef]
  94. Mala, S.; Jat, M.K. Implications of meteorological and physiographical parameters on dengue fever occurrences in Delhi. Sci. Total Environ. 2019, 650, 2267–2283. [Google Scholar] [CrossRef]
  95. Martínez-Bello, D.; López-Quílez, A.; Prieto, A.T. Spatiotemporal modeling of relative risk of dengue disease in Colombia. Stoch. Environ. Res. Risk Assess. 2017, 32, 1587–1601. [Google Scholar] [CrossRef]
  96. Martínez-Bello, D.A.; López-Quílez, A.; Torres Prieto, A. Relative risk estimation of dengue disease at small spatial scale. Int. J. Health Geogr. 2017, 16, 31. [Google Scholar] [CrossRef]
  97. McClure, K.M.; Lawrence, C.; Kilpatrick, A.M. Land Use and Larval Habitat Increase Aedes albopictus (Diptera: Culicidae) and Culex quinquefasciatus (Diptera: Culicidae) Abundance in Lowland Hawaii. J. Med. Entomol. 2018, 55, 1509–1516. [Google Scholar] [CrossRef] [PubMed]
  98. Messina, J.P.; Brady, O.J.; Golding, N.; Kraemer, M.U.G.; Wint, G.R.W.; Ray, S.E.; Pigott, D.M.; Shearer, F.M.; Johnson, K.; Earl, L.; et al. The current and future global distribution and population at risk of dengue. Nat. Microbiol. 2019, 4, 1508–1515. [Google Scholar] [CrossRef] [PubMed]
  99. Murdock, C.C.; Evans, M.V.; McClanahan, T.D.; Miazgowicz, K.L.; Tesla, B. Fine-scale variation in microclimate across an urban landscape shapes variation in mosquito population dynamics and the potential of Aedes albopictus to transmit arboviral disease. PLoS Negl. Trop. Dis. 2017, 11, e0005640. [Google Scholar] [CrossRef] [Green Version]
  100. Nakhapakorn, K.; Tripathi, N. An information value based analysis of physical and climatic factors affecting dengue fever and dengue haemorrhagic fever incidence. Int. J. Health Geogr. 2005, 4, 13. [Google Scholar] [CrossRef] [Green Version]
  101. Nejati, J.; Bueno-Mari, R.; Collantes, F.; Hanafi-Bojd, A.A.; Vatandoost, H.; Charrahy, Z.; Tabatabaei, S.M.; Yaghoobi-Ershadi, M.R.; Hasanzehi, A.; Shirzadi, M.R.; et al. Potential Risk Areas of Aedes albopictus in South-Eastern Iran: A Vector of Dengue Fever, Zika, and Chikungunya. Front. Microbiol. 2017, 8, 1660. [Google Scholar] [CrossRef] [Green Version]
  102. Nitatpattana, N.; Singhasivanon, P.; Kiyoshi, H.; Andrianasolo, H.; Yoksan, S.; Gonzalez, J.P.; Barbazan, P. Potential association of dengue hemorrhagic fever incidence and remote senses land surface temperature, Thailand, 1998. Southeast Asian J. Trop. Med. Public Health 2007, 38, 427–433. [Google Scholar]
  103. Ogashawara, I.; Li, L.; Moreno-Madriñán, M.J. Spatial-Temporal Assessment of Environmental Factors Related to Dengue Outbreaks in São Paulo, Brazil. GeoHealth 2019, 3, 202–217. [Google Scholar] [CrossRef]
  104. Pineda-cortel, M.R.B.; Clemente, B.M.; Pham Thi Thanh, N. Modeling and predicting dengue fever cases in key regions of the Philippines using remote sensing data. Asian Pac. J. Trop. Med. 2019, 12, 60–66. [Google Scholar] [CrossRef]
  105. Qu, Y.; Shi, X.; Wang, Y.; Li, R.; Lu, L.; Liu, Q. Effects of socio-economic and environmental factors on the spatial heterogeneity of dengue fever investigated at a fine scale. Geospat. Health 2018, 13. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  106. Qureshi, E.M.A.; Tabinda, A.B.; Vehra, S. The distribution of Aedes aegypti (diptera, culicidae) in eight selected parks of Lahore, using oviposition traps during rainy season. J. Pak. Med Assoc. 2017, 67, 1493–1497. [Google Scholar]
  107. Abdul Rahm, S.; Rahim, A.; Mallongi, A. Forecasting of Dengue Disease Incident Risks Using Non-stationary Spatial of Geostatistics Model in Bone Regency Indonesia. J. Entomol. 2016, 14, 49–57. [Google Scholar] [CrossRef] [Green Version]
  108. Ren, H.; Wu, W.; Li, T.; Yang, Z. Urban villages as transfer stations for dengue fever epidemic: A case study in the Guangzhou, China. PLoS Negl. Trop. Dis. 2019, 13, e0007350. [Google Scholar] [CrossRef] [Green Version]
  109. Restrepo, A.C.; Baker, P.; Clements, A.C. National spatial and temporal patterns of notified dengue cases, Colombia 2007–2010. Trop. Med. Int. Health 2014, 19, 863–871. [Google Scholar] [CrossRef]
  110. Richards, S.L.; Apperson, C.S.; Ghosh, S.K.; Cheshire, H.M.; Zeichner, B.C. Spatial Analysis of Aedes albopictus (Diptera: Culicidae) Oviposition in Suburban Neighborhoods of a Piedmont Community in North Carolina. J. Med Entomol. 2006, 43, 976–989. [Google Scholar] [CrossRef]
  111. Rogers, D.J.; Suk, J.E.; Semenza, J.C. Using global maps to predict the risk of dengue in Europe. Acta Trop. 2014, 129, 1–14. [Google Scholar] [CrossRef]
  112. Freitas, M.G.R.; Tsouris, P.; Reis, I.C.; Magalhães, M.d.A.F.M.; Nascimento, T.F.S.; Honório, N.A. Dengue and Land Cover Heterogeneity in Rio De Janeiro. Oecologia Aust. 2010, 14, 641–667. [Google Scholar] [CrossRef] [Green Version]
  113. Rotela, C.; Fouque, F.; Lamfri, M.; Sabatier, P.; Introini, V.; Zaidenberg, M.; Scavuzzo, C. Space–time analysis of the dengue spreading dynamics in the 2004 Tartagal outbreak, Northern Argentina. Acta Trop. 2007, 103, 1–13. [Google Scholar] [CrossRef]
  114. Saravanabavan, V.; Balaji, D.; Preethi, S. Identification of dengue risk zone: A geo-medical study on Madurai city. GeoJournal 2018, 84, 1073–1087. [Google Scholar] [CrossRef]
  115. Sarfraz, M.S.; Tripathi, N.K.; Tipdecho, T.; Thongbu, T.; Kerdthong, P.; Souris, M. Analyzing the spatio-temporal relationship between dengue vector larval density and land-use using factor analysis and spatial ring mapping. BMC Public Health 2012, 12, 853. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  116. Sarfraz, M.S.; Tripathi, N.K.; Kitamoto, A. Near real-time characterisation of urban environments: A holistic approach for monitoring dengue fever risk areas. Int. J. Digit. Earth 2013, 7, 916–934. [Google Scholar] [CrossRef]
  117. Sarfraz, M.S.; Tripathi, N.K.; Faruque, F.S.; Bajwa, U.I.; Kitamoto, A.; Souris, M. Mapping urban and peri-urban breeding habitats of Aedes mosquitoes using a fuzzy analytical hierarchical process based on climatic and physical parameters. Geospat. Health 2014, 8, S685–S697. [Google Scholar] [CrossRef] [PubMed]
  118. Scavuzzo, J.M.; Trucco, F.; Espinosa, M.; Tauro, C.B.; Abril, M.; Scavuzzo, C.M.; Frery, A.C. Modeling Dengue vector population using remotely sensed data and machine learning. Acta Trop. 2018, 185, 167–175. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  119. Shafie, A. Evaluation of the Spatial Risk Factors for High Incidence of Dengue Fever and Dengue Hemorrhagic Fever Using GIS Application. Sains Malays. 2011, 40, 937–943. [Google Scholar]
  120. Sheela, A.M.; Sarun, S.; Justus, J.; Vineetha, P.; Sheeja, R.V. Assessment of changes of vector borne diseases with wetland characteristics using multivariate analysis. Environ. Geochem. Health 2014, 37, 391–410. [Google Scholar] [CrossRef]
  121. Sheela, A.M.; Ghermandi, A.; Vineetha, P.; Sheeja, R.V.; Justus, J.; Ajayakrishna, K. Assessment of relation of land use characteristics with vector-borne diseases in tropical areas. Land Use Policy 2017, 63, 369–380. [Google Scholar] [CrossRef]
  122. Stanforth, A.; Moreno-Madrinan, M.J.; Ashby, J. Exploratory Analysis of Dengue Fever Niche Variables within the Rio Magdalena Watershed. Remote Sens. 2016, 8, 770. [Google Scholar] [CrossRef] [Green Version]
  123. Tariq, B.; Zaidi, A.Z. Geostatistical modeling of dengue disease in Lahore, Pakistan. SN Appl. Sci. 2019, 1, 459. [Google Scholar] [CrossRef] [Green Version]
  124. Teurlai, M.; Menkès, C.E.; Cavarero, V.; Degallier, N.; Descloux, E.; Grangeon, J.-P.; Guillaumot, L.; Libourel, T.; Lucio, P.S.; Mathieu-Daudé, F.; et al. Socio-economic and Climate Factors Associated with Dengue Fever Spatial Heterogeneity: A Worked Example in New Caledonia. PLoS Negl. Trop. Dis. 2015, 9, e0004211. [Google Scholar] [CrossRef] [Green Version]
  125. Tian, H.; Huang, S.; Zhou, S.; Bi, P.; Yang, Z.; Li, X.; Chen, L.; Cazelles, B.; Yang, J.; Luo, L.; et al. Surface water areas significantly impacted 2014 dengue outbreaks in Guangzhou, China. Environ. Res. 2016, 150, 299–305. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  126. Tiong, V.; Abd-Jamil, J.; Mohamed Zan, H.A.; Abu-Bakar, R.S.; Ew, C.L.; Jafar, F.L.; Nellis, S.; Fauzi, R.; AbuBakar, S. Evaluation of land cover and prevalence of dengue in Malaysia. Trop. Biomed. 2015, 32, 587–597. [Google Scholar]
  127. Tipayamongkholgul, M.; Lisakulruk, S. Socio-geographical factors in vulnerability to dengue in Thai villages: A spatial regression analysis. Geospat. Health 2011, 5, 191–198. [Google Scholar] [CrossRef] [PubMed]
  128. Troyo, A.; Fuller, D.O.; Calderon-Arguedas, O.; Solano, M.E.; Beier, J.C. Urban structure and dengue fever in Puntarenas, Costa Rica. Singap. J. Trop. Geogr. 2009, 30, 265–282. [Google Scholar] [CrossRef]
  129. Tsuda, Y.; Suwonkerd, W.; Chawprom, S.; Prajakwong, S.; Takagi, M. Different Spatial Distribution of Aedes aegypti and Aedes albopictus along an Urban–Rural Gradient and the Relating Environmental Factors Examined in Three Villages in Northern Thailand. J. Am. Mosq. Control Assoc. 2006, 22, 222–228. [Google Scholar] [CrossRef]
  130. Van Benthem, B.H.; Vanwambeke, S.O.; Khantikul, N.; Burghoorn-Maas, C.; Panart, K.; Oskam, L.; Lambin, E.F.; Somboon, P. Spatial patterns of and risk factors for seropositivity for dengue infection. Am. J. Trop. Med. Hyg. 2005, 72, 201–208. [Google Scholar] [CrossRef] [Green Version]
  131. Vanwambeke, S.; van Benthem, B.; Khantikul, N.; Burghoorn-Maas, C.; Panart, K.; Oskam, L.; Lambin, E.; Somboon, P. Multi-level analyses of spatial and temporal determinants for dengue infection. Int. J. Health Geogr. 2006, 5, 5. [Google Scholar] [CrossRef] [Green Version]
  132. Vezzani, D.; Rubio, A.; Velázquez, S.M.; Schweigmann, N.; Wiegand, T. Detailed assessment of microhabitat suitability for Aedes aegypti (Diptera: Culicidae) in Buenos Aires, Argentina. Acta Trop. 2005, 95, 123–131. [Google Scholar] [CrossRef]
  133. Wiese, D.; Escalante, A.A.; Murphy, H.; Henry, K.A.; Gutierrez-Velez, V.H. Integrating environmental and neighborhood factors in MaxEnt modeling to predict species distributions: A case study of Aedes albopictus in southeastern Pennsylvania. PLoS ONE 2019, 14, e0223821. [Google Scholar] [CrossRef] [Green Version]
  134. Yue, Y.; Sun, J.; Liu, X.; Ren, D.; Liu, Q.; Xiao, X.; Lu, L. Spatial analysis of dengue fever and exploration of its environmental and socio-economic risk factors using ordinary least squares: A case study in five districts of Guangzhou City, China, 2014. Int. J. Infect. Dis. 2018, 75, 39–48. [Google Scholar] [CrossRef] [Green Version]
  135. Zheng, L.; Ren, H.Y.; Shi, R.H.; Lu, L. Spatiotemporal characteristics and primary influencing factors of typical dengue fever epidemics in China. Infect. Dis. Poverty 2019, 8, 24. [Google Scholar] [CrossRef] [PubMed]
Figure 1. The overall workflow of semi-supervised text classification.
Figure 1. The overall workflow of semi-supervised text classification.
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Figure 2. The distribution of the number of relevant records per score rank interval. The grey line represents the distribution of 131 relevant records according to the rank intervals for each of the 20 text scoring experiments, and the red line represents the mean number of relevant records in each score interval.
Figure 2. The distribution of the number of relevant records per score rank interval. The grey line represents the distribution of 131 relevant records according to the rank intervals for each of the 20 text scoring experiments, and the red line represents the mean number of relevant records in each score interval.
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Figure 3. Overview of essential dengue landscape factors derived from the selected articles.
Figure 3. Overview of essential dengue landscape factors derived from the selected articles.
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Table 1. Pre-set terms and priority levels for titles and abstract scoring.
Table 1. Pre-set terms and priority levels for titles and abstract scoring.
Priority LevelsPre-Set Terms (KEYi) Included for Text ScoringInterval of Weights
Highdengue, environment, landscape, land cover, land use, vegetation, tree, water, built, road, residential, commercial, industrial, normalized difference vegetation index (NDVI), normalized difference water index (NDWI), elevation[7,10]
Mediumremote sensing, satellite, earth observation[4,7]
Lowtemperature, precipitation [1,4]
Table 2. Number of records derived from each step of semi-supervised text classification.
Table 2. Number of records derived from each step of semi-supervised text classification.
No.Semi-Supervised Text Classification ProcessesNumber of Records
1Board searches13,893
2Removal of duplicates7696
3Text scoring2034
4Bidirectional long short-term memory (BiLSTM) active learning131
5Inclusion101
Table 3. Relevant and unlabeled records derived from BiLSTM-based active learning.
Table 3. Relevant and unlabeled records derived from BiLSTM-based active learning.
CyclesBiLSTMActive LearningRest Records
RelevantUnlabeled
Before------2034
1st599885111435
2nd323392841112
3rd723691036
4th42141994
5th20020974
Total10561319250
Table 4. Satellite Earth observation sensors and derived products used for identifying dengue landscape factors. Information on spatial and temporal resolution was taken from Huete et al. [27], Hamm et al. [26] and Marti et al. [9].
Table 4. Satellite Earth observation sensors and derived products used for identifying dengue landscape factors. Information on spatial and temporal resolution was taken from Huete et al. [27], Hamm et al. [26] and Marti et al. [9].
Sensors/ProductsVariablesSpatial Resolution Temporal ResolutionLaunched/End of Mission
MODISMOD11C3LST5.5 kmMonthly2000-02-01 to Present
MOD13C2NDVI, VFC5.5 kmMonthly2000-02-01 to Present
MYD11C3nLST, dLST5.5 kmMonthly2002-07-01 to Present
MYD11A1LST1 kmDaily2002-07-04 to Present
MOD11A2LST, nLST, dLST1 km8 days2000-02-18 to Present
MOD13A3NDVI, VFC1 kmMonthly2000-02-01 to Present
MOD13C1NDVI, EVI500 m16 days2000-02-18 to Present
MCD12Q1LC500 mYearly2001-01-01 to 2018-12-31
MxD09A1NDVI250 m8 days
MOD09Q1NDWI250 m8 days2000-02-24 to Present
MOD13Q1NDVI, EVI, LC250 m16 days2000-02-18 to Present
MYD09GQEVI250 mDaily2002-07-04 to Present
AVHRR/2 LST1.1 kmDaily1981-06 to 1986-06
SRTM SIR-C SRTM DEMElevation, aspect, slope, drainage, flow accumulation and steam feature30 m/90 m-Released in 2000
ASTERGDEMElevation, drainage30 m-Released in 2009 (v1)
Released in 2011 (v2)
Released in 2019 (v3)
Landsat 4 TM LU/LC30 m16 days1982-07 to 1993-12
Landsat 5 TM LU/LC, TCB, TCW, TCG, LST, NDVI30 m 16 days1984-03 to 2013-06
Landsat 7 ETM+ LU/LC, NDVI, LST, B, G, R, NIR, SWIR1, SWIR2, thermal band30 m16 days1999-04 to Present
Landsat 8 OLI LU/LC, NDVI, NDWI, NDBI, LST30 m16 days2013-02 to Present
IRS-P6 LC24 m5 days2003-10 to 2013-09
SPOT 4 LU/LC20 m2–3 days1998-03 to 2013-06
Sentinel-2 LC10 m10 days2015-06 to Present (2A)
2017-03 to Present (2B)
GaoFen-1 LC, NDWI16 m≤ 4 days 2013-04 to Present
SPOT 5 LU/LC, NDVI, NDWI2.5 m, 5 m/10 m2–3 days2002-05 to 2015-03
ALOS AVNIR-2 LU/LC10 m14 days1996-08 to 2011-05
ZY-3 LU/LC2.1 m/5.8 m5 days2012-01 to Present
IKONOS LU4 mApproximately 3 days 1999-09 to 2015-03
Quickbird LU/LC2.4 m/0.6 m1–3.5 days2001-10 to 2015-01
Worldview-2 LC0.5 m/1.8 m1.1 days2009-10 to Present
MODIS: Moderate Resolution Imaging Spectroradiometer; LST: Land Surface Temperature; NDVI: Normalized Difference Vegetation Index; NDBI: Normalized Difference Built-up Index; NDWI: Normalized Difference Water Index; VFC: Vegetation Fractional Coverage; EVI: Enhanced Vegetation Index; AVHRR: Advanced Very High Resolution Radiometer; SRTM: Shuttle Radar Topography Mission; SIR-C: Spaceborne Imaging Radar-C; DEM: Digital Elevation Model; ASTER: Advanced Spaceborne Thermal Emission and Reflection Radiometer; GDEM: Global Digital Elevation Model; TM: Thematic Mapper; ETM+: Enhanced Thematic Mapper; OLI: Operational Land Imager; LU: Land Use; LC: Land Cover; TCB: Tasseled Cap Brightness; TCW: Tasseled Cap Wetness; TCG: Tasseled Cap Greenness; B: Blue band; G: Green band; R: Red band; NIR: Infrared Band; SWIR: Short-wave infrared band; ZY-3: Ziyuan 3; IRS-P6: Indian Remote-Sensing Satellite-P6; SPOT: Satellite Pour l’Observation de la Terre; ALOS: Advanced Land Observing Satellite; AVNIR-2: Advanced Visible and Near Infrared Radiometer type 2.

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MDPI and ACS Style

Li, Z.; Gurgel, H.; Dessay, N.; Hu, L.; Xu, L.; Gong, P. Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation. Int. J. Environ. Res. Public Health 2020, 17, 4509. https://doi.org/10.3390/ijerph17124509

AMA Style

Li Z, Gurgel H, Dessay N, Hu L, Xu L, Gong P. Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation. International Journal of Environmental Research and Public Health. 2020; 17(12):4509. https://doi.org/10.3390/ijerph17124509

Chicago/Turabian Style

Li, Zhichao, Helen Gurgel, Nadine Dessay, Luojia Hu, Lei Xu, and Peng Gong. 2020. "Semi-Supervised Text Classification Framework: An Overview of Dengue Landscape Factors and Satellite Earth Observation" International Journal of Environmental Research and Public Health 17, no. 12: 4509. https://doi.org/10.3390/ijerph17124509

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