DAta Linkage to Enhance Cancer Care (DaLECC): Protocol of a Large Australian Data Linkage Study
Abstract
:1. Introduction
Research Aims
2. Materials and Methods
2.1. Cohort
2.2. Data Linkage
2.3. Data
2.3.1. South Australian Cancer Registry (SACR)
2.3.2. South Australian Upper Gastrointestinal (GI) Multidisciplinary Team (MDT) Database
2.3.3. Healthcare Utilisation
MBS and PBS
Hospital Care
2.4. Variables
2.4.1. Distance to Healthcare
2.4.2. GP Regularity
2.4.3. Comorbidities
2.4.4. Diagnosed with Cancer through the ED
2.4.5. Supportive Care
2.5. Ethics
2.6. Research Aims
2.6.1. Pathways to Diagnosis
- Describe diagnosis pathway through ED by cancer type and year
- Evaluate the predictors of variation in ED diagnosis pathway
- Evaluate whether ED diagnosis pathways predict all-cause mortality and treatment costs
2.6.2. Regularity of GP Care
- Describe GP regularity pre- and post-diagnosis both within individuals and between cancer types
- Evaluate the predictors of variation in GP regularity pre- and post- diagnosis
- Evaluate whether GP regularity pre- and post-diagnosis predicts all-cause mortality and health costs, and additionally whether GP regularity pre-diagnosis predicts the extent of the disease at diagnosis
2.6.3. Time to Treatment from Diagnosis
- Describe the proportion of the cohort who receive treatment following diagnosis in the time frames suggested by Optimal Care Pathway (OCP) guidelines for each cancer type, and whether this varies by cancer type and year
- Evaluate the predictors of variation in time to treatment
- Evaluate whether time to treatment predicts all-cause mortality and health costs
2.6.4. Supportive Care Needs
- Describe supportive care needs and patterns of supportive care experienced by patients’ post-diagnosis by cancer type
- Evaluate predictors of variation in supportive care needs and supportive care
- Evaluate whether variation in supportive care needs and supportive care predicts all-cause mortality and health costs
2.6.5. Case study: Upper GI Cancer
- Describe MDTs and change over time in the number of patients discussed, rate of claiming MBS MDT item numbers, number of diagnostic tests completed pre- and post-MDT, time between diagnosis and MDT discussion, and number of MDT discussions per patient
- Evaluate whether MDT attendance has an impact on patterns of care, including inpatient separations, ED presentations, GP attendances, allied health, overall all-cause mortality, and health costs
- Explore the use of real-world evidence to evaluate pharmaceuticals, such as Fluorouracil, Leucovorin, Oxaliplatin, and Docetaxel (FLOT) chemotherapy and Herceptin, and the use of new healthcare services, including the provision of regional chemotherapy services.
2.7. Data Analyses
2.7.1. Descriptive Statistics
2.7.2. Predictors of Variation in Care
2.7.3. Consequences of Variation in Care
2.7.4. Case Study: Upper GI Cancer
3. Discussion
3.1. Stakeholder Engagement
3.2. Limitations
4. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A
Database | Variables |
---|---|
Study cohort | |
SA Cancer Registry (SACR) | Patient data Age at diagnosis Date of birth Gender Date of death Age at death Socio-Economic Indexes for Areas (SEIFA) Australian Standard Geographical Classification (ASGC) Remoteness Areas classification Disease characteristics Date of diagnosis Cancer site/type (ICD-10) Most valid basis of diagnosis Staging (disease extent) Topography (ICD-O-3) Morphology (ICD-O-3) Underlying cause of death |
Healthcare utilisation and costs | |
SA public hospital inpatient separations | Admission date Admission urgency status Condition onset flag Intended length of stay Length of ICU stay Number of days of hospital-in-the-home care Patient election status Procedure code (ACHI 9th ed) Separation date Principal diagnosis (ICD-10-AM) Additional diagnoses (ICD-10-AM) Source of funding Geographical remoteness Organisation identifier Region identifier Sector Care type Hospital insurance status Patient—previous specialised treatment Medicare eligibility status Australian refined diagnosis-related group (AR-DRG) |
SA hospital emergency department (ED) presentations | Principle diagnosis Diagnosis classification Additional diagnosis code Presentation date Physical departure date Type of visit to ED Urgency related group (URG) Funding eligibility indicator Organisation identifier Clinical care commencement date Episode and date Episode and status Service episode length Triage category Triage date Compensable status |
Medicare Benefits Scheme (MBS) | Servicing provider postcode Referring provider postcode Servicing provider number Servicing provider practice number Servicing provider registered speciality Number of services Referring provider number Referring provider practice number Referring date Date of service Date of processing Current item number Original item number at date of service Hospital flag Bulk-billing flag MBS category code MBS group code MBS subgroup code Broad type of service Benefit paid amount Fee charged amount Schedule fee amount |
Pharmaceutical Benefits Scheme (PBS) | Pharmacy postcode Prescriber postcode PBS item Drug type Benefit amount Patient contribution amount Streamlined authority approval number Under co-payment prescription type CTG co-payment eligibility code Pharmacy approval type Pharmacy identifier Prescriber speciality Prescriber type Date of prescribing Prescriber identifier Repeat prescription indicator Number of scripts dispensed Quantity supplied Date of supply Patient category |
Other | |
SA Deaths | Date of death Underlying cause of death Other causes of death |
Upper Gastrointestinal (GI) Multidisciplinary Team meeting (MDT) database | Hospital identifier Cancer site Date of MDT Meeting Number of times the patient has previously been discussed at an MDT Flag for cancer recurrence Flag for whether a treatment decision was made Reason for why treatment decision not made Treatment recommendation |
References
- Vos, T.; Lim, S.S.; Abbafati, C.; Abbas, K.M.; Abbasi, M.; Abbasifard, M.; Abbasi-Kangevari, M.; Abbastabar, H.; Abd-Allah, F.; Abdelalim, A. Global burden of 369 diseases and injuries in 204 countries and territories, 1990–2019: A systematic analysis for the Global Burden of Disease Study 2019. Lancet 2020, 396, 1204–1222. [Google Scholar] [CrossRef]
- Chen, S.; Cao, Z.; Prettner, K.; Kuhn, M.; Yang, J.; Jiao, L.; Wang, Z.; Li, W.; Geldsetzer, P.; Bärnighausen, T.; et al. Estimates and Projections of the Global Economic Cost of 29 Cancers in 204 Countries and Territories From 2020 to 2050. JAMA Oncol. 2023, 9, 465–472. [Google Scholar] [CrossRef]
- Hussey, P.S.; Wertheimer, S.; Mehrotra, A. The association between health care quality and cost: A systematic review. Ann. Intern. Med. 2013, 158, 27–34. [Google Scholar] [CrossRef]
- Australian Institute of Health and Welfare. Cancer in Australia 2021; Cancer series no. 133; Cat. no. CAN 144; AIHW: Canberra, Australia, 2021. [Google Scholar]
- The Sax Institute. What Is Linked Health Data? Available online: https://www.saxinstitute.org.au/wp-content/uploads/What-is-linked-health-data1.pdf (accessed on 28 November 2022).
- Gabriel, G.; Barton, M.; Delaney, G.P. The effect of travel distance on radiotherapy utilization in NSW and ACT. Radiother. Oncol. 2015, 117, 386–389. [Google Scholar] [CrossRef]
- Luyendijk, M.; Vernooij, R.W.M.; Blommestein, H.M.; Siesling, S.; Uyl-de Groot, C.A. Assessment of Studies Evaluating Incremental Costs, Effectiveness, or Cost-Effectiveness of Systemic Therapies in Breast Cancer Based on Claims Data: A Systematic Review. Value Health 2020, 23, 1497–1508. [Google Scholar] [CrossRef]
- Callander, E.; Topp, S.M.; Larkins, S.; Sabesan, S.; Bates, N. Quantifying Queensland patients with cancer health service usage and costs: Study protocol. BMJ Open 2017, 7, e014030. [Google Scholar] [CrossRef]
- Goldsbury, D.E.; Yap, S.; Weber, M.F.; Veerman, L.; Rankin, N.; Banks, E.; Canfell, K.; O’Connell, D.L. Health services costs for cancer care in Australia: Estimates from the 45 and Up Study. PLoS ONE 2018, 13, e0201552. [Google Scholar] [CrossRef]
- Li, M.; Olver, I.; Keefe, D.; Holden, C.; Worthley, D.; Price, T.; Karapetis, C.; Miller, C.; Powell, K.; Buranyi-Trevarton, D.; et al. Pre-diagnostic colonoscopies reduce cancer mortality—Results from linked population-based data in South Australia. BMC Cancer 2019, 19, 856. [Google Scholar] [CrossRef]
- Merollini, K.M.D.; Gordon, L.G.; Aitken, J.F.; Kimlin, M.G. Lifetime Costs of Surviving Cancer-A Queensland Study (COS-Q): Protocol of a Large Healthcare Data Linkage Study. Int. J. Environ. Res. Public Health 2020, 17, 2831. [Google Scholar] [CrossRef]
- Yerrell, P.H.; Roder, D.; Cargo, M.; Reilly, R.; Banham, D.; Micklem, J.M.; Morey, K.; Stewart, H.B.; Stajic, J.; Norris, M.; et al. Cancer Data and Aboriginal Disparities (CanDAD)-developing an Advanced Cancer Data System for Aboriginal people in South Australia: A mixed methods research protocol. BMJ Open 2016, 6, e012505. [Google Scholar] [CrossRef]
- Jefford, M.; Koczwara, B.; Emery, J.; Thornton-Benko, E.; Vardy, J.L. The important role of general practice in the care of cancer survivors. Aust. J. Gen. Pract. 2020, 49, 288–292. [Google Scholar] [CrossRef]
- Zhou, Y.; Abel, G.A.; Hamilton, W.; Pritchard-Jones, K.; Gross, C.P.; Walter, F.M.; Renzi, C.; Johnson, S.; McPhail, S.; Elliss-Brookes, L.; et al. Diagnosis of cancer as an emergency: A critical review of current evidence. Nat. Rev. Clin. Oncol. 2017, 14, 45–56. [Google Scholar] [CrossRef]
- Ng, H.S.; Roder, D.; Koczwara, B.; Vitry, A. Comorbidity, physical and mental health among cancer patients and survivors: An Australian population-based study. Asia-Pac. J. Clin. Oncol. 2018, 14, e181–e192. [Google Scholar] [CrossRef]
- Sarfati, D.; Gurney, J.; Lim, B.T.; Bagheri, N.; Simpson, A.; Koea, J.; Dennett, E. Identifying important comorbidity among cancer populations using administrative data: Prevalence and impact on survival. Asia-Pac. J. Clin. Oncol. 2016, 12, e47–e56. [Google Scholar] [CrossRef]
- Zullig, L.L.; Drake, C.; Shahsahebi, M.; Avecilla, R.A.V.; Whitney, C.; Mills, C.; Oeffinger, K.C. Adherence to cardiovascular disease risk factor medications among patients with cancer: A systematic review. J. Cancer Surviv. 2022. ahead of print. [Google Scholar] [CrossRef]
- Harlan, L.C.; Klabunde, C.N.; Ambs, A.H.; Gibson, T.; Bernstein, L.; McTiernan, A.; Meeske, K.; Baumgartner, K.B.; Ballard-Barbash, R. Comorbidities, therapy, and newly diagnosed conditions for women with early stage breast cancer. J. Cancer Surviv. 2009, 3, 89–98. [Google Scholar] [CrossRef]
- Wang, H.; Sun, X.; Zhao, L.; Chen, X.; Zhao, J. Androgen deprivation therapy is associated with diabetes: Evidence from meta-analysis. J. Diabetes Investig. 2016, 7, 629–636. [Google Scholar] [CrossRef]
- Bellas, O.; Kemp, E.; Edney, L.; Oster, C.; Roseleur, J. The impacts of unmet supportive care needs of cancer survivors in Australia: A qualitative systematic review. Eur. J. Cancer Care 2022, 31, e13726. [Google Scholar] [CrossRef]
- Australian Institute of Health and Welfare. Australian Cancer Database (ACD). Available online: https://www.aihw.gov.au/about-our-data/our-data-collections/australian-cancer-database (accessed on 22 November 2022).
- Geoscience Australia. Area of Australia—States and Territories. Available online: https://www.ga.gov.au/scientific-topics/national-location-information/dimensions/area-of-australia-states-and-territories (accessed on 22 November 2022).
- Australian Bureau of Statistics. National, State and Territory Population—December 2021. Available online: https://www.abs.gov.au/statistics/people/population/national-state-and-territory-population/dec-2021 (accessed on 22 November 2022).
- Australian Bureau of Statistics. Location: Census—2021. Available online: https://www.abs.gov.au/statistics/people/people-and-communities/location-census/2021 (accessed on 22 November 2022).
- SA NT DataLink. SA NT DataLink. Available online: https://www.santdatalink.org.au/home (accessed on 22 November 2022).
- The Sax Institute. Why Choose SURE for Data Release? A Guide for Data Custodians. Available online: https://www.saxinstitute.org.au/wp-content/uploads/SURE-Factsheet.pdf (accessed on 22 November 2022).
- South Australian Legislation. Health Care Regulations 2008 under the Health Care Act 2008. Available online: https://www.legislation.sa.gov.au/LZ/C/R/Health%20Care%20Regulations%202008.aspx (accessed on 28 November 2022).
- South Australian Cancer Registry; Prevention and Population Health Directorate; Wellbeing SA. Cancer in South Australia 2019—With Projections to 2022; Government of South Australia: Adelaide, Australia, 2021. [Google Scholar]
- Moorin, R.E.; Youens, D.; Preen, D.B.; Wright, C.M. The association between general practitioner regularity of care and ‘high use’hospitalisation. BMC Health Serv. Res. 2020, 20, 915. [Google Scholar] [CrossRef]
- Youens, D.; Harris, M.; Robinson, S.; Preen, D.B.; Moorin, R.E. Regularity of contact with GPs: Measurement approaches to improve valid associations with hospitalization. Fam. Pract. 2019, 36, 650–656. [Google Scholar] [CrossRef]
- Youens, D.; Doust, J.; Robinson, S.; Moorin, R. Regularity and continuity of GP contacts and use of statins amongst people at risk of cardiovascular events. J. Gen. Intern. Med. 2021, 36, 1656–1665. [Google Scholar] [CrossRef] [PubMed]
- Sarfati, D.; Gurney, J.; Stanley, J.; Salmond, C.; Crampton, P.; Dennett, E.; Koea, J.; Pearce, N. Cancer-specific administrative data–based comorbidity indices provided valid alternative to Charlson and National Cancer Institute Indices. J. Clin. Epidemiol. 2014, 67, 586–595. [Google Scholar] [CrossRef]
- Sarfati, D.; Gurney, J.; Stanley, J.; Lim, B.T.; McSherry, C. Development of a pharmacy-based comorbidity index for patients with cancer. Med. Care 2014, 52, 586–593. [Google Scholar] [CrossRef] [PubMed]
- McPhail, S.; Swann, R.; Johnson, S.A.; Barclay, M.E.; Abd Elkader, H.; Alvi, R.; Barisic, A.; Bucher, O.; Clark, G.R.; Creighton, N. Risk factors and prognostic implications of diagnosis of cancer within 30 days after an emergency hospital admission (emergency presentation): An International Cancer Benchmarking Partnership (ICBP) population-based study. Lancet Oncol. 2022, 23, 587–600. [Google Scholar] [CrossRef] [PubMed]
- Basu, A. Estimating person-centered treatment (PeT) effects using instrumental variables: An application to evaluating prostate cancer treatments. J. Appl. Econom. 2014, 29, 671–691. [Google Scholar] [CrossRef]
- StataCorp. Stata Statistical Software: Release 16; StataCorp LLC: College Station, TX, USA, 2019. [Google Scholar]
- R Core Team. R: A Language and Environment for Statistical Computing; R Foundation for Statistical Computing: Vienna, Austria, 2022; Available online: https://www.R-project.org/ (accessed on 10 October 2022).
- Bates, N.; Callander, E.; Lindsay, D.; Watt, K. CancerCostMod: A model of the healthcare expenditure, patient resource use, and patient co-payment costs for Australian cancer patients. Health Econ. Rev. 2018, 8, 28. [Google Scholar] [CrossRef]
- Merollini, K.M.D.; Gordon, L.G.; Ho, Y.M.; Aitken, J.F.; Kimlin, M.G. Cancer Survivors’ Long-Term Health Service Costs in Queensland, Australia: Results of a Population-Level Data Linkage Study (Cos-Q). Int. J. Environ. Res. Public Health 2022, 19, 9473. [Google Scholar] [CrossRef]
- Beckmann, K.R.; Bennett, A.; Young, G.P.; Roder, D.M. Treatment patterns among colorectal cancer patients in South Australia: A demonstration of the utility of population-based data linkage. J. Eval. Clin. Pract. 2014, 20, 467–477. [Google Scholar] [CrossRef]
- Lal, A.; McCaffrey, N.; Gold, L.; Roder, D.; Buckley, E. Variations in utilisation of colorectal cancer services in South Australia indicated by MBS/PBS benefits: A benefit incidence analysis. Aust. N. Z. J. Public Health 2022, 46, 237–242. [Google Scholar] [CrossRef]
- Li, M.; Reintals, M.; D’Onise, K.; Farshid, G.; Holmes, A.; Joshi, R.; Karapetis, C.S.; Miller, C.L.; Olver, I.N.; Buckley, E.S.; et al. Investigating the breast cancer screening-treatment-mortality pathway of women diagnosed with invasive breast cancer: Results from linked health data. Eur. J. Cancer Care 2022, 31, e13539. [Google Scholar] [CrossRef]
- Cancer Voices SA. Welcome to Cancer Voices South Australia. Available online: https://cancervoicessa.org.au/ (accessed on 22 November 2022).
- Fox, P.; Boyce, A. Cancer health inequality persists in regional and remote Australia. Med. J. Aust. 2014, 201, 445–446. [Google Scholar] [CrossRef] [PubMed]
- Mahumud, R.A.; Alam, K.; Dunn, J.; Gow, J. Emerging cancer incidence, mortality, hospitalisation and associated burden among Australian cancer patients, 1982–2014: An incidence-based approach in terms of trends, determinants and inequality. BMJ Open 2019, 9, e031874. [Google Scholar] [CrossRef] [PubMed]
- Chu, D.I.; Freedland, S.J. Prostate cancer. Socioeconomic status and disparities in treatment patterns. Nat. Rev. Urol. 2010, 7, 480–481. [Google Scholar] [CrossRef] [PubMed]
Data Limitations | Response to Limitations |
---|---|
Medicare | |
No clinical information is recorded to Medicare. | Informed assumptions regarding reasons for selected pharmaceutical prescriptions and medical services can be made. |
Some privately funded health services not captured. | Our focus is on the public healthcare system; however, interpretation of post-diagnosis pathways of care will also need to consider the omission of privately funded allied health services. |
Medicare, PBS | |
Government contribution may be lower than recorded if a medication has a special pricing arrangement or price volume agreement. | A list of scripts subject to these agreements will be compiled to inform the extent to which the benefit paid may be overestimated. |
Medications supplied through the remote area Aboriginal Health Services are not captured. | Omission will be considered when interpreting data, e.g., for patients living in remote areas. |
Over-the-counter medications are not captured. | Over-the-counter medications generally represent lower-cost medications, but their omission will be considered when interpreting data. |
SA public hospital data | |
Individual-level cost data not available. | Costs can be generated from AR-DRG and URG codes for inpatient separations and ED presentations, respectively. |
Outpatient clinic attendance data not available. | Omission will be considered when interpreting post-diagnosis pathways of care. |
SACR | |
Staging data not recorded. | Early- and late-stage diagnoses can be defined. |
Cancer recurrence not recorded. | Time to progression to late stage will be estimated. |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Edney, L.C.; Roseleur, J.; Bright, T.; Watson, D.I.; Arnolda, G.; Braithwaite, J.; Delaney, G.P.; Liauw, W.; Mitchell, R.; Karnon, J. DAta Linkage to Enhance Cancer Care (DaLECC): Protocol of a Large Australian Data Linkage Study. Int. J. Environ. Res. Public Health 2023, 20, 5987. https://doi.org/10.3390/ijerph20115987
Edney LC, Roseleur J, Bright T, Watson DI, Arnolda G, Braithwaite J, Delaney GP, Liauw W, Mitchell R, Karnon J. DAta Linkage to Enhance Cancer Care (DaLECC): Protocol of a Large Australian Data Linkage Study. International Journal of Environmental Research and Public Health. 2023; 20(11):5987. https://doi.org/10.3390/ijerph20115987
Chicago/Turabian StyleEdney, Laura C., Jackie Roseleur, Tim Bright, David I. Watson, Gaston Arnolda, Jeffrey Braithwaite, Geoffrey P. Delaney, Winston Liauw, Rebecca Mitchell, and Jonathan Karnon. 2023. "DAta Linkage to Enhance Cancer Care (DaLECC): Protocol of a Large Australian Data Linkage Study" International Journal of Environmental Research and Public Health 20, no. 11: 5987. https://doi.org/10.3390/ijerph20115987
APA StyleEdney, L. C., Roseleur, J., Bright, T., Watson, D. I., Arnolda, G., Braithwaite, J., Delaney, G. P., Liauw, W., Mitchell, R., & Karnon, J. (2023). DAta Linkage to Enhance Cancer Care (DaLECC): Protocol of a Large Australian Data Linkage Study. International Journal of Environmental Research and Public Health, 20(11), 5987. https://doi.org/10.3390/ijerph20115987