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Article

Snow Exclusion Does Not Affect Soil Ammonia-Oxidizing Bacteria and Archaea Communities

Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, Institute of Ecology & Forestry, Sichuan Agricultural University, Chengdu 611130, China
*
Author to whom correspondence should be addressed.
Forests 2022, 13(9), 1483; https://doi.org/10.3390/f13091483
Submission received: 3 August 2022 / Revised: 9 September 2022 / Accepted: 9 September 2022 / Published: 14 September 2022
(This article belongs to the Section Forest Soil)

Abstract

:
Soil ammonia-oxidizing microorganisms play important roles in nitrogen (N) cycling in cold ecosystems, but how changes in snow cover will affect their distribution and associated functional characteristics remains unclear. A snow manipulation experiment was conducted to explore the effects of snow exclusion on soil ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) communities and functional characteristics in a spruce forest in the eastern Tibet Plateau. Results showed that the amoA gene abundance and community composition of AOA and AOB did not differ between snow regimes but varied among winter periods. AOA and AOB gene abundances showed a decreasing trend during the snow cover melting period. During the deep snow cover period, Thaumarchaeota and Crenarchaeota in the AOA community decreased significantly, while Proteobacteria and Nitrosospira in the AOB community increased significantly. The main factors affecting the changes in AOA and AOB community diversity and composition were soil MBN, nitrate nitrogen, and temperature, while AOA and AOB community diversity and composition were also significantly correlated with soil enzyme activities related to N cycling. These results recommend that the season-driven variations strongly affected soil ammonia-oxidizing community and functional characteristics more than momentary snow cover change. Such findings offer new insights into how soil N-cycling processes would respond to reduced snowfall in high-altitude regions.

1. Introduction

Seasonal snow cover is an essential factor affecting vegetation composition and biogeochemical cycles in cold ecosystems [1,2,3]. Many high latitudes and altitudes of snowy regions have experienced dramatic climate change in recent decades [4]. In these regions, rising temperatures have a profound impact on winter conditions, such as precipitation in winter being dominated by rain rather than snow [5], resulting in a dramatic reduction in winter snowpack [6]. The decline or absence of insulation of snow cover alters the soil micro-environment [7,8,9,10], resulting in higher root and microbial mortality [11], which are important available nitrogen (N) sources and play a critical role in soil N-cycling processes [10,12]. Therefore, the lack of snow cover in cold ecosystems may have complex and strong impacts on soil ecological processes, especially on soil microbiological processes related to N cycling.
As the first and rate-limiting step of the nitrification process, ammonia oxidation plays a vital role in the global N cycle [13]. In most terrestrial ecosystems, it is largely performed by ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) [14,15,16]. Soil ammonia-oxidizing microbial communities involved in N cycling play an increasingly important role in N-limited subalpine ecosystems [17,18]. Therefore, understanding how ammonia-oxidizing microbial communities in this region respond to snow cover change will be critical. Studies have shown that snowpack thermal insulation prevents the soil temperature from falling well below freezing [19]. The decline or absence of snow cover can lead to lower soil temperature and deep freezing of soil, while also altering soil moisture content and freeze–thaw cycles [10,20,21], further influencing soil AOA and AOB abundances and function [22,23]. In addition, it has been reported that changes in snow cover can also affect the composition of soil microbial communities [7]. However, there are few related studies on the response of soil ammonia-oxidizing microbial community composition and diversity to altered snow cover. Therefore, exploring the effects of snow cover change on the ammonium-oxidizing microbial community is very essential to understanding N-associated ecological processes in cold soils.
In the Tibetan Plateau region, winter snowfall has decreased by 0.6 mm a−1 over the past few decades, and this trend is expected to continue due to strong winter warming [5,24,25]. Compared with high latitudes, the seasonal snow cover in this region has the unique characteristics of short duration and shallow depth [10]. Furthermore, winter soil temperatures are close to the physical melting point and are sensitive to changes in snow cover [26]. In particular, soil nitrifiers have critical roles in soil nitrification and nitrate ( NO 3 -N) availability [22,27]. They are also known to be sensitive to environmental changes [22]. Therefore, soil N-cycling processes in this system may be more significant than in other ecosystems under warming conditions [28]. Previous studies have found that the reduction of seasonal snow cover increased soil net N mineralization and N leaching [29], resulting in increased soil N availability [10]. However, how soil N-cycle-related microorganisms respond to snow cover changes in this region is still unclear. Therefore, we conducted a snow-manipulation experiment in a spruce forest on the eastern Tibetan Plateau to investigate the effects of snow exclusion on soil AOA and AOB communities across critical winter periods. Specifically, we hypothesized that (1) snow cover change affects AOA and AOB communities and function; (2) the AOA and AOB abundances should be lower and community composition should be more variable at the snow exclusion treatments compared to controls; (3) AOA and AOB communities will differ across sampling periods due to contrasting climatic conditions during winter.

2. Materials and Methods

2.1. Site Description and Experimental Design

This manipulation experiment was carried out in a dragon spruce (Picea asperata) forest at the Long-term Research Station of Alpine Forest Ecosystems of Sichuan Agricultural University on the eastern Tibetan Plateau of China (31°15′10″ N, 102°53′29″, 3021 m a.s.l.). The mean annual precipitation is about 850 mm, and the annual average temperature is about 3.0 °C. Snow cover accumulation and melting generally occur in late November of the first year and late March of the following year, respectively. The soil is classified as Cambic Umbrisols [30].
Winter snowfall was excluded using shelters [10]. Toward the beginning of November 2015, six wooden roofs (2 m in height, 3 m × 3 m ground area) were laid in the spruce forest to prevent snow accumulation. A control plot was established near each wooden roof to allow snow input. The snow control started in late November and finished in late March the next year [10]. Add the accumulated snow on each roof to the ground before the snow melts to guarantee a water balance between the with and without snow plots.

2.2. Microclimate Monitoring

Soil temperature (5 cm depth) and moisture (v/v) were measured by Thermochron iButton DS1923-F5 Recorders (Maxim Dallas Semiconductor Corp., Dallas, TX, USA) and Theta probe, respectively. Snow depth in control plots was measured approximately every 2 weeks. The maximum snow depth was 23 cm toward the beginning of March (Figure S1a). Snow exclusion decreased soil temperature (Figure S1a) but had no significant effect on soil moisture (Figure S1b).

2.3. Soil Sampling and Biochemical Analyses

After two years of snow treatment, soil samples (~15 cm) were collected in the early snow cover (ESC, early December 2016), deep snow cover (DSC, mid-February 2017), and snow cover melting (SCM, early April 2017), respectively. Soil samples were randomly collected from three snow exclusion plots and their corresponding control plots. During each sampling period, three soil cores (5 cm diameter, 15 cm deep) were randomly selected from each plot and thoroughly mixed. After removing any visible live plant material, the well-mixed soil was passed through a 2 mm sieve. The soil was used for biochemical analysis.
The soil pH of the moist field soil was determined using a pH meter (PHS-25CW, BANTE Instruments Limited, Shanghai, China) in a 1:2.5 (M/V) soil suspension. Soil ammonium nitrogen and nitrate nitrogen were extracted with 2 M KCl, followed by colorimetric determination of ammonium and nitrate ions in the extract [31]. Total dissolved N (TDN) was measured using a total C and N analyzer (TOC-VcPH + TNM-1, Shimazu Inc., Kyoto, Japan). Dissolved organic N (DON) was extracted by the method of Jones and Willett [32]. Soil microbial biomass nitrogen (MBN) and microbial biomass carbon (MBC) were measured by the fumigation–extraction method [33]. Soil nitrate and nitrite reductase activities were measured as previously described [34].

2.4. Real-Time PCR

The amoA gene clone and the method to create standard curves were as previously described [18]. For real-time PCR, the primers Arch-amoAF/Arch-amoAR and amoA-1F/amoA-2R were used for AOA and AOB, respectively [35,36]. Real-time PCR amplification was performed using the CFX96 system (Bio-Rad, Hercules, CA, USA) in 20 μL reactions containing 10 μL SYBR® Premix Ex TaqTM (TaKaRa, Dalian, China), 0.4 μL of BSA, 0.8 μL of each primer (5 μM), and 1 μL of diluted or undiluted purified soil DNA (1–10 ng) as a template. Three analytical replicates were performed for each soil sample [18].

2.5. Illumina MiSeq Sequencing and Data Processing

The PCR amplification was performed on an ABI GeneAmp® 9700 PCR thermocycler (ABI, CA, USA). The primers Arch-amoAF/Arch-amoAR and amoA-1F/amoA-2R were used for AOA and AOB, respectively [35,36]. The resulted PCR products were extracted from a 2% agarose gel and further purified using the AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA) and quantified using QuantiFluor™-ST (Promega, Madison, WI, USA). Purified amplicons were pooled in equimolar and paired-end sequenced (2 × 300) on an Illumina MiSeq platform (Illumina, San Diego, CA, USA) according to the standard protocols by Majorbio Bio-Pharm Technology Co. Ltd. (Shanghai, China). The raw reads were deposited into the NCBI Sequence Read Archive (SRA) database (accession numbers: SRP159724 and SRP159764).
The raw FASTQ files were de-multiplexed and quality filtered by Trimmomatic and merged by FLASH according to previous research [37]. The raw dataset included only high-quality sequences after the removal of short and low-quality reads. Clustering of operational taxonomic units (OTUs) using UPARSE (version 7.1 http://drive5.com/uparse/ (accessed on 29 October 2021)) with a 97% similarity cut-off. UCHIME was used to identify and delete chimeric sequences [38]. The classification of each amoA gene sequence was analyzed by the RDP Classifier algorithm (http://rdp.cme.msu.edu/ (accessed on 29 October 2021)) against the Fgr amoA database. Rarefaction analysis (abundance-based Sobs) was revealed by Mothur [39].

2.6. Statistical Analysis

One-way ANOVA with Tukey post hoc tests were performed to test the effects of the sampling period on AOA and AOB gene abundances and community alpha diversity under the same treatments. For an individual sampling date, Student’s t-test was used to compare the influence of snow exclusion on the AOA and AOB abundances. Differences of p < 0.05 were considered significant. Statistical analyses were performed using IBM SPSS Statistics, version 20.0 (Armonk, NY, USA).
The Alpha diversity metrics, including richness (Ace index) and diversity (Shannon–Wiener index), were calculated to determine the “richness” and “diversity” functions of the AOA and AOB communities. The permutational multivariate analysis of variance (PERMANOVA) was performed to test the effects of snow treatment and sampling period on the AOA and AOB community structure at the phylum level. Principal coordinates analysis (PCoA) was performed to examine differences in soil AOA and AOB community structure across the different snow regimes and sampling periods. The first axis score of PCoA (PC1) was extracted as one of the explanatory variables for enzyme activities in the subsequent analysis. The analysis of similarity (ANOSIM) was conducted to determine the significant dissimilarities in AOA and AOB communities across the different snow regimes and sampling periods, based on 999 permutations [40]. The variance inflation factors (VIFs) were calculated to check for collinearity among environmental variables. Environmental variables were excluded when VIF was >10. Spearman correlation analysis was used to analyze the correlation between soil variables (ammonium nitrogen, nitrate nitrogen, DON, MBN, MBC, moisture, temperature, and pH) and AOA or AOB community factors (gene abundance, community diversity, and community composition). Mantel test was performed to examine the linkage between AOA or AOB community factors and N-cycle enzymes (nitrate reductase and nitrite reductase). Spearman correlation analysis was performed to examine the autocorrelation among AOA or AOB community factors. Statistical analysis using the VEGAN package in R software [41,42].

3. Results

3.1. Soil N Pools, Microbial Biomass, and Enzyme Activities

Snow exclusion significantly increased soil nitrate nitrogen and MBN concentrations during the deep snow cover period but decreased MBN concentration during the early snow cover period (Table 1). Additionally, snow exclusion reduced soil enzyme activities involved in N cycling and reached a significant difference in the early snow cover period (Table 1). Meanwhile, the sampling period also had a significant impact on soil nitrate nitrogen, MBN, and enzyme activities (Table 1).

3.2. AOA and AOB Abundance in Forest Soils

The amoA gene copy numbers of AOA and AOB ranged from 9.53 × 104 to 1.16 × 106 per gram of dry soils and 1.17 × 105 to 5.08 × 105 per gram of dry soils, respectively. Snow exclusion did not affect the AOA-amoA and AOB-amoA abundances (Figure 1). However, the AOA-amoA abundance varied with the sampling period in both treatments and decreased during the snow cover melting period (Figure 1). The abundance of AOB-amoA only changed significantly during snow exclusion and was lowest during the snow cover melting period (Figure 1).

3.3. Richness and Diversity of AOA and AOB

A total of 246,500 and 382,179 high-quality AOA and AOB sequences were identified in all the samples, respectively. After normalization, each library had 148,518 and 168,012 reads, and AOA and AOB sequences were clustered into 12 to 22 and 22 to 33 OTUs, respectively (Table S1). The AOA and AOB OTU numbers remained at a stable level among all treatments (Table S1, Figure S2). All rarefaction curves tended to approach the saturation plateau, indicating that the data volumes of sequenced reads were reasonable (Figure S2). Snow exclusion had little effect on the richness and diversity of AOA and AOB communities, only decreasing the diversity of AOA communities in the early snow cover period (Figure 2). The sampling period did not affect the richness and diversity of AOA and AOB communities (Figure 2).

3.4. Variation of AOA and AOB in Community Composition

The OTUs of the AOA and AOB communities were classified into four and three phyla, respectively (Figure 3). Sequences that cannot be classified into any known group are designated as unclassified (Figure 3). In the AOA communities, Thaumarchaeota and Crenarchaeota were two known dominant phyla, and Nitrososphaera was the known genus. Proteobacteria and Nitrosospira were the known dominant phylum and genus, respectively, in the AOB communities (Figure 3 and Figure S3).
Snow exclusion did not affect the community compositions of AOA and AOB (Figure 4 and Figure S4). The PERMANOVA showed that the sampling period significantly influenced the AOA (p = 0.001) and AOB (p = 0.002) community structure at the phylum level, and they explained 69.4% and 63.5% of the total variance, respectively (Figure 4). The relative abundance of Crenarchaeota in the early snow cover period was much higher than that in the deep snow cover and snow cover melting periods. The relative abundance of Thaumarchaeota was much lower in the deep snow cover period than that in the early snow cover and snow cover melting periods (Figure 5). However, the relative abundance of Proteobacteria and Nitrosospira in the deep snow cover period was much higher than that in the early snow cover and snow cover melting periods (Figure 5 and Figure S4).

3.5. Correlation between Soil Variables and AOA and AOB

A Spearman correlation analysis was performed to assess the relationships among soil properties and AOA and AOB gene abundance, community diversity, and community composition (Figure 6). The analysis revealed that increasing soil MBN and nitrate nitrogen concentration increased AOA richness (Ace) but decreased AOA-amoA gene abundance (Figure 6). Meanwhile, soil temperature has a significant positive correlation with AOA and a negative correlation with AOB community composition (Figure 6).
Mantel test was performed to assess the correlation between enzyme activities associated with N cycling and AOA and AOB community factors (Figure 7). Among them, nitrate reductase activity has a significant positive correlation with the AOA Shannon index, AOB Ace index, and AOB community composition but a significant negative correlation with AOA community composition (Figure 7). Nitrite reductase activity has a significant negative correlation with the AOA Ace index (Figure 7).

4. Discussion

Global climate change is leading to a reduction in the depth and duration of winter snow cover in snow-covered ecosystems, especially the Tibetan Plateau [5,10]. Yet, the impact of reduced winter snow on soil N-related microbial communities and related functions is unknown. Studies have shown that the impact of changes in environmental conditions on soil microbes may be assessed by measuring changes in nitrifier gene abundance and community composition [16]. Therefore, we utilized a snow-absence experiment to test the effect of snow exclusion on the soil AOA and AOB gene abundance and community structure in a subalpine spruce forest on the eastern Tibetan Plateau. The findings partially support our hypothesis that snow cover changes do affect AOA and AOB communities and their associated functions. This effect was primarily due to environmental differences between sampling periods, rather than snow exclusion treatments. This indicates that soil AOA and AOB communities were not sensitive to short-term snow cover absence.
Previous studies have found that reduced winter snow cover increased AOA gene abundance but decreased AOB gene abundance [22]. However, our study showed that the lack of snow cover did not affect AOA and AOB gene abundances (Figure 1). This may be due to the fact that the 2016–2017 winter saw the highest mean air temperature compared to the last seven winters [43], resulting in a milder winter. Compared with the 2015–2016 winter, the deepest snow cover was decreased by about 17 cm [10], making the snow cover weaker insulation. Therefore, the differences in soil microenvironment between snow cover and exclusion treatments are likely not severe enough to cause lasting changes in the AOA and AOB gene abundances. At the same time, we found that AOA and AOB gene abundances changed with the sampling period. They were higher in the early snow cover and deep snow cover periods. This is consistent with the findings in subalpine grasslands that soil AOA and AOB gene abundances were higher in mid-winter [22]. The accumulated snow cover in the middle of winter may provide a stable microenvironment and available substrate for the proliferation of microorganisms [44,45,46].
The results showed that the AOA community comprised the known phylum and genus of Thaumarchaeota, Crenarchaeota, and Nitrososphaera, while the known phylum and genus identified in the AOB community were Proteobacteria and Nitrosospira. These results were consistent with other ecosystems, such as grassland [16], agriculture [47], and sediment [48], indicating that AOA and AOB communities exhibit a wide range of adaptations.
Consistent with previous studies, snow exclusion had limited effects on soil microbial diversity and community composition [49,50]. Previous findings on soil bacteria and fungi in this region have also shown similar results [37,51]. It may be due to the long-term low-temperature environment helping microorganisms to develop some unique adaptation strategies to extreme cold conditions [52,53]. As a result, short-term mild soil freezing is insufficient to alter the composition of AOA and AOB communities in alpine forest soils. AOA and AOB community composition significantly varied across the sampling period (Figure 4 Figure 5 and Figure S4), although no significant treatment effects were detected. The deep snow cover period inhibited the relative abundance of Crenarchaeota and Thaumarchaeota and enhanced the relative abundance of Proteobacteria and Nitrosospira. It may be that the deep snow cover period provided a stable environment for the growth of Proteobacteria and Nitrosospira. Freeze–thaw cycles in early snow cover and snow cover melting periods may promote the coexistence of additional, cold-adapted taxa [7], suggesting that AOA exhibits stronger adaptability to soil freeze–thaw cycles through community shift. In addition, the present study found that the richness and diversity of AOB were higher than that of AOA in both snow exclusion and control treatments, which was different from the study in sediments [47,54].
Environmental factors, such as temperature, pH, moisture, C/N ratio, nitrate concentration, and total nitrogen, were considered as driving forces affecting the AOA or AOB gene abundance [22,23]. Previous studies demonstrated that soil pH was closely correlated with AOA and AOB gene abundances [16,55]. However, there was no significant correlation between the abundance of AOA and AOB genes and soil pH in this study. This may be attributed to the small changes in soil pH (5.35–5.58) between different treatments, indicating that AOA and AOB are not sensitive to the variation of soil pH in the tested soil. At the same time, the study found that soil MBN and nitrate nitrogen concentrations were the main influencing factors of AOA gene abundance, while no noticeable environmental factors were identified for affecting AOB gene abundance. Soil pH and ammonium concentration were reported to have beneficial effects on ammonia-oxidizing microbial diversity [56]. However, the study did not reach similar conclusions. This study found that the AOA richness was related to soil nitrate nitrogen and MBN, which was consistent with previous research [57]. Meanwhile, we found that soil temperature was the main factor affecting the AOA and AOB community composition in this region [57]. The temperature was positively correlated with AOA community composition but negatively correlated with AOB community composition, which was consistent with previous studies [47]. This may be due to changes in soil temperature within the study area affecting physical conditions, water, and nutrient availability [18] and further affecting AOA and AOB community composition. In addition, changes in AOA and AOB diversity and community composition were associated with enzyme activities related to soil N cycling. Soil nitrate reductase was significantly associated with the community abundance of AOA and AOB, as was studied in sediments [54]. The results of this study showed that nitrate reductase had a positive relationship with the AOB community composition, but there was a significant negative correlation with the AOA community composition. This indicates that soil enzymes can partially reflect the composition and structure of soil microbial communities. In addition, the functional characteristics of soil microbial communities may vary with their composition.

5. Conclusions

In summary, our findings suggest that soil ammonia-oxidizing communities are not sensitive to short-term snow cover change. The abundance and community composition of soil AOA and AOB only exhibited obvious dynamic variations across different critical periods of snow cover. This change is mainly affected by soil temperature, implying that snow-cover-associated changes in soil frost patterns may have more profound implications for these communities and the functions they provide. Therefore, we encourage future studies to focus more on snow-cover-related ecological processes in climate-change-sensitive areas.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/f13091483/s1, Figure S1: Air and soil temperature, snow depth (a), and soil moisture (b) in the control and snow exclusion plots during the winter; Figure S2: Rarefaction curve of the OTU number at 97% similarity cutoff for AOA and AOB; Figure S3: Relative abundance of different AOA and AOB genera in the control and snow exclusion plots during the winter; Figure S4: Relative abundance of Nitrososphaera and Nitrosospira in winter control and snow exclusion plots; Table S1: Sequencing results and number of observed and estimated OTUs at the species level (70% amoA identity).

Author Contributions

Conceptualization, Z.X. and B.T.; methodology, C.Y. and B.T.; software, L.Z. and L.W.; validation, H.L. and C.Y.; formal analysis, L.Z.; writing—original draft preparation, L.Z.; writing—review and editing, S.L., L.W. and Z.X.; visualization, L.Z.; supervision, Z.X.; funding acquisition, L.Z., H.L., S.L. and Z.X. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the National Natural Science Foundation of China (31901295, 32071745, and 32001165), the Program of Sichuan Applied Basic Research Foundation (2022NSFSC0083, 2022NSFSC0997, and 2022NSFSC1753), and the Program of Sichuan Excellent Youth Sci-Tech Foundation (2020JDJQ0052).

Data Availability Statement

Not applicable.

Acknowledgments

We are grateful to the Long-term Research Station of Alpine Forest Ecosystems and the Collaborative Innovation Center of Ecological Security in the Upper Reaches of the Yangtze River.

Conflicts of Interest

The authors declare no conflict of interest. The founding sponsors had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, and in the decision to publish the results.

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Figure 1. The abundances of soil AOA and AOB amoA gene copy numbers (log10 transformed) in winter control and snow exclusion plots. Error bars represent the standard deviation (n = 3). Data shown are mean ± s.e. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. p-Values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
Figure 1. The abundances of soil AOA and AOB amoA gene copy numbers (log10 transformed) in winter control and snow exclusion plots. Error bars represent the standard deviation (n = 3). Data shown are mean ± s.e. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. p-Values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
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Figure 2. The Ace richness index and Shannon diversity index of soil AOA and AOB communities in the control and snow exclusion plots during the winter. Data shown are mean ± s.e. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. p-Values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
Figure 2. The Ace richness index and Shannon diversity index of soil AOA and AOB communities in the control and snow exclusion plots during the winter. Data shown are mean ± s.e. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. p-Values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
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Figure 3. Relative abundance of different AOA and AOB phyla in the control and snow exclusion plots during the winter.
Figure 3. Relative abundance of different AOA and AOB phyla in the control and snow exclusion plots during the winter.
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Figure 4. Principal coordinates analysis (PCoA) of soil AOA and AOB community composition (Bray–Curis distance) at phylum level between snow treatments and sampling periods. Different sampling periods are represented by different symbols. The diamond, circle, and cruciform represent the early snow cover (ESC), deep snow cover (DSC), and snow cover melting (SCM), respectively. The red represents Control (C), and the blue represents snow exclusion (SE).
Figure 4. Principal coordinates analysis (PCoA) of soil AOA and AOB community composition (Bray–Curis distance) at phylum level between snow treatments and sampling periods. Different sampling periods are represented by different symbols. The diamond, circle, and cruciform represent the early snow cover (ESC), deep snow cover (DSC), and snow cover melting (SCM), respectively. The red represents Control (C), and the blue represents snow exclusion (SE).
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Figure 5. Relative abundance of the known group of AOA and AOB communities at the phylum level in winter. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. The p-values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
Figure 5. Relative abundance of the known group of AOA and AOB communities at the phylum level in winter. Different lowercase letters indicate significant differences between sampling periods under the same snow regime. The p-values for snow treatment (Snow), sampling period (Period), and their interactions from repeated measures ANOVA are inserted in the figure.
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Figure 6. Correlation analysis between soil variables and AOA or AOB gene abundance, community diversity, and community composition. TDN: total dissolved nitrogen; DON: dissolved organic nitrogen; MBN: microbial biomass nitrogen; MBC: microbial biomass carbon. * p < 0.05.
Figure 6. Correlation analysis between soil variables and AOA or AOB gene abundance, community diversity, and community composition. TDN: total dissolved nitrogen; DON: dissolved organic nitrogen; MBN: microbial biomass nitrogen; MBC: microbial biomass carbon. * p < 0.05.
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Figure 7. Correlation of N-cycle enzymes with AOA and AOB microbial community. Pairwise comparisons of AOA and AOB gene abundance, community diversity, and community composition with a color gradient denoting the Spearman’s correlation coefficients. Enzymes were related to each microbial community factor by Mantel test. The width of edges corresponds to the Mantel’s statistic for the corresponding distance correlations. The color of the edges represents the positive and negative values of r. * p < 0.05, ** p < 0.01.
Figure 7. Correlation of N-cycle enzymes with AOA and AOB microbial community. Pairwise comparisons of AOA and AOB gene abundance, community diversity, and community composition with a color gradient denoting the Spearman’s correlation coefficients. Enzymes were related to each microbial community factor by Mantel test. The width of edges corresponds to the Mantel’s statistic for the corresponding distance correlations. The color of the edges represents the positive and negative values of r. * p < 0.05, ** p < 0.01.
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Table 1. Effect of snow exclusion on soil N pools, microbial biomass, and enzyme activities.
Table 1. Effect of snow exclusion on soil N pools, microbial biomass, and enzyme activities.
Ammonium Nitrogen
(mg.kg−1)
Nitrate Nitrogen
(mg.kg−1)
TDN
(mg.kg−1)
DON
(mg.kg−1)
MBN
(mg.kg−1)
MBC
(mg.kg−1)
MBC:MBNNitrate Reductase
(mg N O 3 -N kg−1 Soli d−1)
Nitrite Reductase
(mg N O 2 -N kg−1 Soli d−1)
ESCControl21.42 ± 4.4034.37 ± 7.11119.20 ± 9.9263.41 ± 7.7447.36 ± 5.29 Ab423.28 ± 49.739.22 ± 0.810.12 ± 0.03 Ab0.37 ± 0.04 Aa
Snow exclusion18.93 ± 1.6029.70 ± 4.73 c128.07 ± 6.5379.43 ± 3.6430.10 ± 4.26 Bb307.85 ± 30.96 b11.37 ± 1.420.06 ± 0.00 Bb0.24 ± 0.03 B
DSCControl21.83 ± 2.3533.72 ± 5.81 B132.75 ± 11.0277.20 ± 12.3332.48 ± 2.40 Bb394.85 ± 36.6212.05 ± 0.600.31± 0.05 a0.35± 0.04 Aa
Snow exclusion19.23 ± 1.5650.34 ± 4.25 Ab150.03 ± 12.6280.46 ± 11.6241.43 ± 2.31 Ab456.91 ± 41.71 a10.92 ± 0.600.29± 0.05 a0.20± 0.03 B
SCMControl20.85 ± 2.1450.92 ± 9.59140.53 ± 12.0968.75 ± 9.6467.15 ± 7.41 a443.67 ± 70.998.49 ± 2.220.20± 0.01 b0.20± 0.02 b
Snow exclusion16.56 ± 0.4265.99 ± 1.48 a160.46 ± 10.6877.91 ± 11.3856.21 ± 5.74 a505.40 ± 48.76 a9.93 ± 1.430.18± 0.04 ab0.19± 0.00
Note: TDN: total dissolved nitrogen; DON: dissolved organic nitrogen; MBN: microbial biomass nitrogen; MBC: microbial biomass carbon. Different capital letters indicate significant differences between control and snow exclusion in the same sampling period. Different lowercase letters indicate significant differences between sampling periods under the same snow regime.
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Zhang, L.; You, C.; Liu, S.; Wang, L.; Tan, B.; Xu, Z.; Li, H. Snow Exclusion Does Not Affect Soil Ammonia-Oxidizing Bacteria and Archaea Communities. Forests 2022, 13, 1483. https://doi.org/10.3390/f13091483

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Zhang L, You C, Liu S, Wang L, Tan B, Xu Z, Li H. Snow Exclusion Does Not Affect Soil Ammonia-Oxidizing Bacteria and Archaea Communities. Forests. 2022; 13(9):1483. https://doi.org/10.3390/f13091483

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Zhang, Li, Chengming You, Sining Liu, Lixia Wang, Bo Tan, Zhenfeng Xu, and Han Li. 2022. "Snow Exclusion Does Not Affect Soil Ammonia-Oxidizing Bacteria and Archaea Communities" Forests 13, no. 9: 1483. https://doi.org/10.3390/f13091483

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