Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Virus Isolation and Antibody Detection
2.2. Literature Review
3. Results
3.1. Prospective—Virus Isolation and Antibody Detection
3.2. Retrospective—Literature Review
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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A/BBWD/LA/UGAI18-484 (H10N7) Genbank Accession No. (Gene Segment) | BLAST Result | GenBank Accession No. | % nt Similarity | |
---|---|---|---|---|
MN937687 (PB2) | First | A/MALL/IL/16OS4580/2016(H7N3) | MG279778 | 99.2 |
Second | A/MALL/OH/17OS1892/2017(H10N7) | MK236922 | 99.1 | |
MN937686 (PB1) | First | A/MALL/OH/16OS0620/2016(H10N7) | KY561093 | 99.4 |
Second | A/COGO/WI/16OS4147/2016(H10N3) | MG280078 | 99.2 | |
MN937685 (PA) | First | A/BWTE/WY/AH0099021/2016(H7N9) | MG266063 | 99.5 |
Second | A/duck/AL/17-008643-2/2017(H7N9) | MF357835 | 99.5 | |
MN937680 (HA) | First | A/MALL/OH/16OS0620/2016(H10N7) | KY561022 | 99.4 |
Second | A/NSHO/NV/D1615770/2016(H10N9) | MK928244 | 99.1 | |
MN937683 (NP) | First | A/GWTE/IL/17OS1400/2017(H7N3) | MG279995 | 99.5 |
Second | A/MALL/OH/17OS1739/2017(H3N8 | MK237096 | 99.4 | |
MN937682 (NA) | First | A/MALL/OH/16OS0620/2016(H10N7) | KY561241 | 99.5 |
Second | A/MALL/IL/16OS4899/2016(H10N7) | MG279737 | 99.3 | |
MN937681 (M) | First | A/LESC/IL/17OS1577/2017(H7N3) | MG280109 | 99.4 |
Second | A/NSHO/IL/11OS5680/2011(H11N9) | CY166988 | 98.9 | |
MN937684 (NS) | First | A/NSHO/CA/HS206/2015(H8N4) | KY983106 | 99.3 |
Second | A/BWTE/Guatemala/CIP049H102-18/2011(H1N3) | KX960456 | 99.3 |
Testing Method | Reference | Study Year | Location | Season | Species | Number Screened | Number PCR Positive (%) | VI Positive (%) | Subtype (#) |
---|---|---|---|---|---|---|---|---|---|
rrt-PCR screen only | Hoque et al. 2015 [17] | 2007–2010 | Australia | year-round | Dendrocygna arcuata | 10 | 0 (0) | n/t 6 | |
D. eytoni | 1892 | 17 (0.9) | n/t | H6 (3) 5 | |||||
rrt-PCR screen, VI 2 of PCR (+) | Gaidet et al. 2007 [12] | 2006 | Africa | overwintering | D. bicolor | 102 | 1 (1) | 0 (0) | |
D. viduata | 1157 | 38 (3.3) | 2 (0.2) | H1N1 (1), H8N4 (1) 10 | |||||
Cumming et al. 2011 [13] | 2007–2009 | Africa (southern) | N/R 1 | D. bicolor | 4 | 2 (50) | 0 (0) | H6 (1) 4 | |
D. viduata | 229 | 10 (4.4) | 0 (0) | H5 (1), H7 (5) 4 | |||||
Thalassornis leuconotus | 1 | 0 (0) | 0 (0) | ||||||
Pereda et al. 2008 [18] | 2006–2007 | Argentina | May | D. autumnalis | 1 | 0 (0) | |||
N/R 1 | D. bicolor | 139 | 0 (0) | ||||||
May–July | D. viduata | 53 | 0 (0) | ||||||
Marinova-Petkova et al. 2014 [19] | n/r | Bangladesh | D. javanica | 2196 | 0 (0) | ||||
Hurtado et al. 2016 [20] | n/r | Brazil | captive | D. autumnalis | 86 | 0 (0) | 0 (0) | ||
D. viduata | 6 | 1 (16.7) | 0 (0) | ||||||
Karlsson et al. 2013 [15] | 2010–2012 | Colombia | resident | D. autumnalis | 489 | 14 (2.9) | 1 (0.2) | LP 11 H5N2 (1) 10 | |
D. viduata | 71 | 5 (7.0) | 1 (1.4) | LP H5N2 (1) 10 | |||||
Gonzalez-Reiche et al. 2012 [21] | 2007–2010 | Guatemala | resident | D. autumnalis | 1 | 0 (0) | |||
Gonzalez-Reiche et al. 2016 [22] | 2010–2013 | Guatemala | winter migration | D. autumnalis | 2 | 1 (50) | 0 (0) | ||
D. bicolor | 2 | 2 (100) | 0 (0) | ||||||
Gaidet et al. 2008 [14] | 2007 | Nigeria | Feb | D. viduata | 9 | 1 (11.1) | 0 (0) | HP 12 H5N2 5 | |
Caron et al. 2011 [23] | 2007–2009 | Zimbabwe | N/R 1 | D. bicolor | 1 | 0 (0) | 0 (0) | ||
D. viduata | 152 | 9 (6) | 0 (0) | ||||||
PCR screen, VI of PCR (+) (pooled samples) | Ofula et al. 2013 [24] | n/r | Kenya | Afrotropical; October, migration | D. viduata | 34 [pools] 9 | 2 (5.9) 9 | 0 (0) | |
PCR and VI of all | Ferro et al. 2010 [16] | 2006–2009 | Texas, United States | overwintering (November) | D. bicolor | 18 | 2 (11.1) | 1 (5.6) | H6N1 (1) 10 |
D. autumnalis | 15 | 0 (0) | 0 (0) | ||||||
PCR screen and/or VI | Negovetich et al. 2011 [25] | n/r | Bangladesh | N/R | nr | nr | 0 (0) | ||
Pooled VI or PCR 3 | Curran et al. 2015 [26] | n/r | northern Australia | August–November | D. eytoni | 1786 7 | 23 (1.6) 7 | 1 (0.06) 7 | H6N1 (1) 10 |
D. arcuata | 13 7 | nr | nr | ||||||
VI only | Wongphatcharachai et al. 2011 [27] | 2009–2010 | Thailand | January, winter | D. javanica | nr | nr | nr | H12N1 (3) 10 |
Mackenzie et al. 1984 [28] | 1977–1978 | western Australia | year-round | D. arcuata | 94 | n/a | 0 (0) | ||
D. eytoni | 60 | 0 (0) | |||||||
Keawcharoen et al. 2011 [29] | n/r | Thailand | breeding visitor | D. javanica | 54 | Nt | 2 (3.7) | HP H5N2 (2) 10 | |
PCR totals 8 | 4837 | 84 | 1.7% | ||||||
VI Results 9 | 4942 | 7 | 0.1% |
Testing Method | Reference | Location | Season | Species | Number Screened | Initial Screen (% Positive) | Second Screen (% Positive) |
---|---|---|---|---|---|---|---|
cELISA a screen, HI b of ELISA(+) | Hoque et al. 2015 [17] | Australia | year-round | Dendrocygna arcuata | 8 | 1 (12.5) | n/r |
D. eytoni | 1209 | 90 (7.4) | n/r | ||||
AGID c and bELISA d | Brown et al. 2010 [30] | Argentina | May | D. autumnalis | 1 | 0 (0) | 0 (0) |
unknown | D. bicolor | 45 | 1(2.0) | 12 (27.0) | |||
January–February | 14 | 1 (7.1) | 5 (35.7) | ||||
May–July | 31 | 0 (0) | 7 (22.3) | ||||
May–July | D. viduata | 9 | 0 (0) | 0 (0) | |||
cELISA screen, HI | Curran et al. 2015 [26] | northern Australia | August–November | D. arcuata | 11 | 1 (9.1) | n/r |
D. eytoni | 1806 | 757 (41.9) | n/r | ||||
Hassan et al. 2020 [31] | Bangladesh | migratory; winter | D. javanica | n/r e | 5 | n/r | |
ELISA | Daodu et al. 2020 [32] | Nigeria | unknown | D. viduata | 4 | 0(0) | n/a f |
Total screened | 3130 | 851 (27) |
Continent | ||||||
---|---|---|---|---|---|---|
Species | Africa | Asia | Australia | North America | South America | Total |
Dendrocygna autumnalis | n/r 1 | n/r | n/r | 0/39 | 0/44 | 0/83 |
D. bicolor | 0/8 2 | n/r | n/r | 0/5 | 0/101 | 0/114 |
D. eytoni | n/r | n/r | 0/3 | n/r | n/r | 0/3 |
D. javanica | n/r | 223/3655 (6.1) | n/r | n/r | n/r | 223/3655 (6.1) |
D. viduata | 0/14 | n/r | n/r | n/r | 0/377 | 0/391 |
Dendrocygna spp. | n/r | 0/2 | n/r | n/r | n/r | 0/2 |
Total | 0/22 | 223/3657 (6.1) | 0/3 | 0/44 | 0/522 | 223/4248 (5.2) |
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Carter, D.L.; Link, P.; Tan, G.; Stallknecht, D.E.; Poulson, R.L. Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae). Viruses 2021, 13, 192. https://doi.org/10.3390/v13020192
Carter DL, Link P, Tan G, Stallknecht DE, Poulson RL. Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae). Viruses. 2021; 13(2):192. https://doi.org/10.3390/v13020192
Chicago/Turabian StyleCarter, Deborah L., Paul Link, Gene Tan, David E. Stallknecht, and Rebecca L. Poulson. 2021. "Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae)" Viruses 13, no. 2: 192. https://doi.org/10.3390/v13020192
APA StyleCarter, D. L., Link, P., Tan, G., Stallknecht, D. E., & Poulson, R. L. (2021). Influenza A Viruses in Whistling Ducks (Subfamily Dendrocygninae). Viruses, 13(2), 192. https://doi.org/10.3390/v13020192