Genetic Characterization and Pathogenesis of H5N1 High Pathogenicity Avian Influenza Virus Isolated in South Korea during 2021–2022
Abstract
:1. Introduction
2. Materials and Methods
2.1. Viruses
2.2. Sequencing, Phylogenetic Analysis and Genome Constellation
2.3. Animal Experiment
2.4. Viral Shedding, Virus Replication in Organs, and Hemagglutination Inhibition (HI) Test
3. Results and Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Virus Name | Subtype | Reassortant | Genotype | Phylogenetic Group within Each Gene Segment | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
PB2 | PB1 | PA | HA | NP | NA | MP | NS | ||||
21WA585 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21WA622 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
22WA44 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
21H519-2-3 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H526 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H535-2 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H541-3 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H543 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H550 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H552 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H554 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H559 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H560 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H589 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H590 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H605 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H608 | H5N1 | ACB5C1AA | III | A | C | B | 5 | C | 1 | A | A |
21H617 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H621 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H623 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H625 | H5N1 | ACB5C1AA | III | A | C | B | 5 | C | 1 | A | A |
21H638 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H640 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
21H649 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H013 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H038 | H5N1 | AAA5A1AA | I | A | A | A | 5 | A | 1 | A | A |
22H056 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H057 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H058 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H063 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H079 | H5N1 | ACB5C1AA | III | A | C | B | 5 | C | 1 | A | A |
22H087 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H088 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H090 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H091 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H097 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H124 | H5N1 | ACB5C1AA | III | A | C | B | 5 | C | 1 | A | A |
22H125 | H5N1 | BBA5B1BB | IV | B | B | A | 5 | B | 1 | B | B |
22H127 | H5N1 | BBA5B1BB | IV | B | B | A | 5 | B | 1 | B | B |
22H128 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H129 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H130 | H5N1 | BBA5B1BB | IV | B | B | A | 5 | B | 1 | B | B |
22H138 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H139 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H141 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H152 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H153 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H154-1 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H155 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H196-2 | H5N1 | BBA5B1BB | IV | B | B | A | 5 | B | 1 | B | B |
22H200 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
22H232 | H5N1 | BBA5B1BB | IV | B | B | A | 5 | B | 1 | B | B |
22H384 | H5N1 | ADA5A1AA | II | A | D | A | 5 | A | 1 | A | A |
Bird Species | IVPI | Virus Dose (EID50/0.1 mL) | Mortality (%) | MDT (Day) | HI Titer (log2, Mean ± SD) | LD50 (EID50/0.1 mL) | BID50 (EID50/0.1 mL) |
---|---|---|---|---|---|---|---|
SPF chicken | 2.98 | 106.2 a | 5/5 b (100) | 2.6 | NT | 103.7 | - |
105.2 | 5/5 (100) | 4.2 | NT | ||||
104.2 | 5/5 (100) | 6.0 | NT | ||||
103.2 | 0/5 (0.0) | - | 0/5(0.0) | ||||
102.2 | 0/5 (0.0) | - | 0/5(0.0) | ||||
Contact | 3/3 (100) | 4.6 | NT | ||||
Duck | - | 106.2 | 0/5 (0.0) | - | 4/4 *(6.5 ± 1.3) | - | 103.2 |
104.2 | 0/5 (0.0) | - | 5/5 (5.8 ± 1.1) | ||||
102.2 | 0/5 (0.0) | - | 0/5 (0.0) | ||||
Contact | 0/3 (0.0) | - | 3/3 (5.4 ± 1.5) |
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Cha, R.M.; Lee, Y.-N.; Park, M.-J.; Baek, Y.-G.; Shin, J.-I.; Jung, C.H.; Sagong, M.; Heo, G.-B.; Kang, Y.-M.; Lee, K.-N.; et al. Genetic Characterization and Pathogenesis of H5N1 High Pathogenicity Avian Influenza Virus Isolated in South Korea during 2021–2022. Viruses 2023, 15, 1403. https://doi.org/10.3390/v15061403
Cha RM, Lee Y-N, Park M-J, Baek Y-G, Shin J-I, Jung CH, Sagong M, Heo G-B, Kang Y-M, Lee K-N, et al. Genetic Characterization and Pathogenesis of H5N1 High Pathogenicity Avian Influenza Virus Isolated in South Korea during 2021–2022. Viruses. 2023; 15(6):1403. https://doi.org/10.3390/v15061403
Chicago/Turabian StyleCha, Ra Mi, Yu-Na Lee, Min-Ji Park, Yoon-Gi Baek, Jae-In Shin, Chang Hwa Jung, Mingeun Sagong, Gyeong-Beom Heo, Yong-Myung Kang, Kwang-Nyeong Lee, and et al. 2023. "Genetic Characterization and Pathogenesis of H5N1 High Pathogenicity Avian Influenza Virus Isolated in South Korea during 2021–2022" Viruses 15, no. 6: 1403. https://doi.org/10.3390/v15061403
APA StyleCha, R. M., Lee, Y. -N., Park, M. -J., Baek, Y. -G., Shin, J. -I., Jung, C. H., Sagong, M., Heo, G. -B., Kang, Y. -M., Lee, K. -N., Lee, Y. -J., & Lee, E. -K. (2023). Genetic Characterization and Pathogenesis of H5N1 High Pathogenicity Avian Influenza Virus Isolated in South Korea during 2021–2022. Viruses, 15(6), 1403. https://doi.org/10.3390/v15061403