The Seasonality of Respiratory Viruses in a Hong Kong Hospital, 2014–2023
Abstract
:1. Introduction
2. Materials and Methods
2.1. Clinical Specimens
2.2. Multiplex PCR Assays for Respiratory Viruses
2.3. Data Retrieval and Analysis
3. Results
3.1. Background Demographics
3.2. Trends in the Number of Testing and PCR Positivity
3.3. Co-Detection of Viruses
3.4. Specimen Type and Frequency of Detection
3.5. Seasonality of Respiratory Viruses
3.5.1. Influenza A and B Viruses
3.5.2. Parainfluenza Viruses 1–4
3.5.3. Respiratory Syncytial Virus
3.5.4. Metapneumovirus
3.5.5. Adenovirus
3.5.6. Rhinovirus/Enterovirus
3.5.7. Coronaviruses and SARS-CoV-2
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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* Year | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2020 | 2021 | 2022 | 2023 | ||
# NIH style age groups | Neonates or newborns (birth to <1 month) | 27 (1.65%) | 32 (1.68%) | 36 (1.35%) | 20 (0.67%) | 22 (0.73%) | 22 (0.68%) | 7 (0.46%) | 9 (0.78%) | 13 (1.31%) | 4 (0.38%) |
Infants (1 month to <1 year) | 184 (11.23%) | 235 (12.35%) | 224 (8.43%) | 298 (10.05%) | 311 (10.30%) | 205 (6.38%) | 129 (8.39%) | 113 (9.84%) | 89 (8.95%) | 63 (5.97%) | |
Children (1 year to 12 years) | 1260 (76.88%) | 1379 (72.46%) | 1973 (74.23%) | 2026 (68.33%) | 2018 (66.84%) | 1996 (62.1%) | 571 (37.15%) | 620 (54.01%) | 538 (54.12%) | 656 (62.12%) | |
Adolescents (13 years to 17 years) | 24 (1.46%) | 24 (1.26%) | 34 (1.28%) | 40 (1.35%) | 43 (1.42%) | 54 (1.68%) | 41 (2.67%) | 17 (1.48%) | 21 (2.11%) | 20 (1.89%) | |
Adults (18 years to 64 years) | 75 (4.58%) | 112 (5.89%) | 235 (8.84%) | 354 (11.94%) | 358 (11.86%) | 554 (17.24%) | 394 (25.63%) | 178 (15.51%) | 171 (17.20%) | 168 (15.91%) | |
Older adults (65 years or older) | 69 (4.21%) | 121 (6.36%) | 156 (5.87%) | 227 (7.66%) | 267 (8.84%) | 383 (11.92%) | 395 (25.70%) | 211 (18.38%) | 162 (16.30%) | 145 (13.73%) | |
Gender | Male | 887 (54.12%) | 1025 (53.86%) | 1407 (52.93%) | 1539 (51.91%) | 1600 (53.00%) | 1650 (51.34%) | 793 (51.59%) | 612 (53.31%) | 502 (50.50%) | 564 (53.41%) |
Female | 752 (45.88%) | 878 (46.14%) | 1251 (47.07%) | 1426 (48.09%) | 1419 (47.00%) | 1564 (48.66%) | 744 (48.41%) | 536 (46.69%) | 492 (49.50%) | 492 (46.59%) | |
Patient type | Inpatients | 1327 (80.96%) | 1454 (76.41%) | 1917 (72.12%) | 2141 (72.21%) | 2077 (68.80%) | 2007 (62.45%) | 866 (56.34%) | 746 (64.98%) | 445 (44.77%) | 471 (44.60%) |
Outpatients | 312 (19.04%) | 449 (23.59%) | 741 (27.88%) | 824 (27.79%) | 942 (31.20%) | 1207 (37.55%) | 671 (43.66%) | 402 (35.02%) | 549 (55.23%) | 585 (55.40%) |
CoVs | RV/EV | MPV | Flu A & B | PIV1–4 | RSV | SARS-CoV-2 | |
---|---|---|---|---|---|---|---|
ADV | 71 | 413 | 39 | 53 | 142 | 72 | 2 |
CoVs | 186 | 20 | 78 | 90 | 50 | 0 | |
RV/EV | 181 | 335 | 672 | 396 | 6 | ||
MPV | 35 | 62 | 28 | 1 | |||
Flu A & B | 93 | 58 | 4 | ||||
PIV1–4 | 147 | 3 | |||||
RSV | 2 |
LRT | URT | Combined URT | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Detected | Not Detected | Detected | Not Detected | Detected | Not Detected | |||||||
n | % | n | % | n | % | n | % | n | % | n | % | |
Flu A & B | 35 | 5.93 | 555 | 94.07 | 2763 | 16.62 | 13,861 | 83.38 | 69 | 2.37 | 2844 | 97.63 |
PIV1–4 | 12 | 2.03 | 578 | 97.97 | 1769 | 10.64 | 14,855 | 89.36 | 192 | 6.59 | 2721 | 93.41 |
RSV | 12 | 2.03 | 578 | 97.97 | 1573 | 9.46 | 15,051 | 90.54 | 231 | 7.93 | 2682 | 92.07 |
MPV | 14 | 2.37 | 576 | 97.63 | 882 | 5.31 | 15,742 | 94.69 | 30 | 1.03 | 2883 | 98.97 |
ADV | 15 | 2.54 | 575 | 97.46 | 1337 | 8.04 | 15,287 | 91.96 | 48 | 1.65 | 2865 | 98.35 |
RV/EV | 73 | 12.37 | 517 | 87.63 | 4594 | 27.63 | 12,030 | 72.37 | 561 | 19.26 | 2352 | 80.74 |
CoVs | 12 | 2.03 | 578 | 97.97 | 724 | 4.36 | 15,900 | 95.64 | 69 | 2.37 | 2844 | 97.63 |
SARS-CoV-2 | 10 | 8 | 115 | 92 | 20 | 2.53 | 771 | 97.47 | 127 | 5.77 | 2074 | 94.23 |
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Chan, W.-S.; Yau, S.-K.; To, M.-Y.; Leung, S.-M.; Wong, K.-P.; Lai, K.-C.; Wong, C.-Y.; Leung, C.-P.; Au, C.-H.; Wan, T.S.-K.; et al. The Seasonality of Respiratory Viruses in a Hong Kong Hospital, 2014–2023. Viruses 2023, 15, 1820. https://doi.org/10.3390/v15091820
Chan W-S, Yau S-K, To M-Y, Leung S-M, Wong K-P, Lai K-C, Wong C-Y, Leung C-P, Au C-H, Wan TS-K, et al. The Seasonality of Respiratory Viruses in a Hong Kong Hospital, 2014–2023. Viruses. 2023; 15(9):1820. https://doi.org/10.3390/v15091820
Chicago/Turabian StyleChan, Wai-Sing, Siu-Kei Yau, Man-Yan To, Sau-Man Leung, Kan-Pui Wong, Ka-Chun Lai, Ching-Yan Wong, Chin-Pang Leung, Chun-Hang Au, Thomas Shek-Kong Wan, and et al. 2023. "The Seasonality of Respiratory Viruses in a Hong Kong Hospital, 2014–2023" Viruses 15, no. 9: 1820. https://doi.org/10.3390/v15091820
APA StyleChan, W. -S., Yau, S. -K., To, M. -Y., Leung, S. -M., Wong, K. -P., Lai, K. -C., Wong, C. -Y., Leung, C. -P., Au, C. -H., Wan, T. S. -K., Ma, E. S. -K., & Tang, B. S. -F. (2023). The Seasonality of Respiratory Viruses in a Hong Kong Hospital, 2014–2023. Viruses, 15(9), 1820. https://doi.org/10.3390/v15091820