SCANellome V2: Update of the Primate Anellovirus Reference Sequences Database
Abstract
:1. Introduction
2. Materials and Methods
Scanellome Database
- 12 Alphatorquevirus using epithet “cero” for Cercopithecidae hosts or “homin” for Hominidae hosts and with number matching former names;
- 144 Betatorquevirus using epithet “homini” for Hominidae hosts and with numbers incrementing by the hundreds depending on taxonomy group and by the tens according to their provisional name;
- 50 Gammatorquevirus using epithet “homidi” for Hominidae hosts with numbered increments from 16 to 65;
- one Omegatorquevirus using epithet “hominid”;
- three Epsilontorquevirus using epithet “cebid” for Cebidae hosts or “calli” for Callitrichidae hosts.
3. Results
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Genus | Number of Complete ORF1 Sequences | Representatives 90% Identity | Number of Species | Number of Species without ICTV Approved | |||
---|---|---|---|---|---|---|---|
V1 | V2 | V1 | V2 | V1 | V2 | ||
Alphatorquevirus | 5444 | 6096 | 419 | 469 | 36 | 36 | 12 |
Betatorquevirus | 6659 | 6820 | 1856 | 1908 | 178 | 180 | 144 |
Gammatorquevirus | 5534 | 5617 | 1376 | 1393 | 64 | 64 | 50 |
Hetorquevirus | 109 | 69 | 15 | 10 | 7 | 5 | 0 |
Sadetorquevirus | NA | 41 * | NA | 6 * | NA | 2 * | 0 |
Yodtorquevirus | 17 | 17 | 2 | 2 | 2 | 2 | 0 |
Lamedtorquevirus | 33 | 37 | 5 | 6 | 1 | 1 | 0 |
Memtorquevirus | 55 | 58 | 20 | 22 | 3 | 3 | 0 |
Samektorquevirus | 124 | 128 | 32 | 35 | 4 | 4 | 0 |
Omegatorquevirus | 3 | 2 ** | 3 | 2 ** | 3 | 2 | 1 |
Epsilontorquevirus | 1 | 10 | 1 | 10 | 1 | 4 | 3 |
Zetatorquevirus | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
Total | 17,980 | 18,896 | 3730 | 3864 | 300 | 304 | 210 |
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Laubscher, F.; Kaiser, L.; Cordey, S. SCANellome V2: Update of the Primate Anellovirus Reference Sequences Database. Viruses 2024, 16, 1349. https://doi.org/10.3390/v16091349
Laubscher F, Kaiser L, Cordey S. SCANellome V2: Update of the Primate Anellovirus Reference Sequences Database. Viruses. 2024; 16(9):1349. https://doi.org/10.3390/v16091349
Chicago/Turabian StyleLaubscher, Florian, Laurent Kaiser, and Samuel Cordey. 2024. "SCANellome V2: Update of the Primate Anellovirus Reference Sequences Database" Viruses 16, no. 9: 1349. https://doi.org/10.3390/v16091349