Effect of Different Fertilization Practices on Soil Microbial Community in a Wheat–Maize Rotation System
Abstract
:1. Introduction
2. Materials and Methods
2.1. Discription of the Experimental Site
2.2. Sampling and Chemical Measurement
2.3. Phospholipid Fatty Acid (PLFA) Analysis
2.4. Soil Enzyme Activities
2.5. Statistical Analysis
3. Results
3.1. Soil Chemical Properties
3.2. Microbial Biomass and Community Structure
3.3. Soil Enzyme Activities
4. Discussion
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
- Guo, J.H.; Liu, X.J.; Zhang, Y.; Shen, J.L.; Han, W.X.; Zhang, W.F.; Christie, P.; Goulding, K.W.T.; Vitousek, P.M.; Zhang, F.S. Significant acidification in major Chinese croplands. Science 2010, 327, 1008–1010. [Google Scholar] [CrossRef]
- Zhang, F.S.; Cui, Z.L.; Fan, M.S.; Zhang, W.F.; Chen, X.P.; Jiang, R.F. Integrated soil–crop system management: Reducing environmental risk while increasing crop productivity and improving nutrient use efficiency in China. J. Environ. Qual. 2011, 40, 1051–1057. [Google Scholar] [CrossRef]
- Li, Y.; Liu, H.J.; Huang, G.H.; Zhang, R.H.; Yang, H.Y. Nitrate nitrogen accumulation and leaching pattern at a winter wheat: Summer maize cropping field in the North China Plain. Environ. Earth Sci. 2016, 75, 118. [Google Scholar] [CrossRef]
- Gattinger, A.; Muller, A.; Haeni, M.; Skinner, C.; Fliessbach, A.; Buchman, N.; Mäder, P.; Stolze, M.; Smith, P.; Scialabba, N.E.H.; et al. Enhanced top soil carbon stocks under organic farming. Pro. Natl. Acad. Sci. USA 2012, 109, 18226–18231. [Google Scholar] [CrossRef] [Green Version]
- Schimel, D.S. Terrestrial ecosystems and the carbon cycle. Glob. Chang. Boil. 1995, 1, 77–91. [Google Scholar] [CrossRef]
- Doran, J.W.; Zeiss, M.R. Soil health and sustainability: Managing the biotic component of soil quality. Appl. Soil Ecol. 2000, 15, 3–11. [Google Scholar] [CrossRef]
- Hartmann, M.; Frey, B.; Mayer, J.; Mader, P.; Widmer, F. Distinct soil microbial diversity under long-term organic and conventional farming. ISME J. 2015, 9, 1177–1194. [Google Scholar] [CrossRef]
- Zhou, J.; Jiang, X.; Zhou, B.; Zhao, B.; Ma, M.; Guan, D.; Li, J.; Chen, S.; Cao, F.; Shen, D.; et al. Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China. Soil Biol. Biochem. 2016, 95, 135–143. [Google Scholar] [CrossRef]
- Geisseler, D.; Scow, K.M. Long-term effects of mineral fertilizers on soil microorganisms–A review. Soil Biol. Biochem. 2014, 75, 54–63. [Google Scholar] [CrossRef]
- Esperschütz, J.; Gattinger, A.; Mäder, P.; Schloter, M.; Fließbach, A. Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiol. Ecol. 2007, 61, 26–37. [Google Scholar] [CrossRef] [Green Version]
- He, J.Z.; Shen, J.P.; Zhang, L.M.; Zhu, Y.G.; Zheng, Y.M.; Xu, M.G.; Di, H.J. Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ. Microbiol. 2007, 9, 2364–2374. [Google Scholar] [CrossRef]
- Li, J.J.; Zhou, X.M.; Yan, J.X.; Li, H.J.; He, J.Z. Effects of regenerating vegetation on soil enzyme activity and microbial structure in reclaimed soils on a surface coal mine site. Appl. Soil Ecol. 2015, 87, 56–62. [Google Scholar] [CrossRef]
- Moore-Kucera, J.; Dick, R.P. PLFA profiling of microbial community structure and seasonal shifts in soils of a Douglas-fir chronosequence. Microb. Ecol. 2008, 55, 500–511. [Google Scholar] [CrossRef]
- Balota, E.L.; Colozzi-Filho, A.; Andrade, D.S.; Dick, R.P. Microbial biomass in soils under different tillage and crop rotation systems. Biol. Fertil. Soils 2003, 38, 15–20. [Google Scholar] [CrossRef]
- Ofek-Lalzar, M.; Sela, N.; Goldman-Voronov, M.; Green, S.J.; Hadar, Y.; Minz, D. Niche and host-associated functional signatures of the root surface microbiome. Nat. Commun. 2014, 5, 4950. [Google Scholar] [CrossRef]
- Reinhold-Hurek, B.; Bunger, W.; Burbano, C.S.; Sabale, M.; Hurek, T. Roots shaping their microbiome: Global hotspots for microbial activity. Annu. Rev. Phytopathol. 2015, 53, 403–424. [Google Scholar] [CrossRef]
- Bardgett, R.D.; Lovell, R.D.; Hobbs, P.J.; Jarvis, S.C. Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biol. Biochem. 1999, 31, 1021–1030. [Google Scholar] [CrossRef]
- Spedding, T.A.; Hamel, S.C.; Mehuys, G.R.; Madramootoo, C.A. Soil microbial dynamics in maize-growing soil under different tillage and residue management systems. Soil Biol. Biochem. 2004, 36, 499–512. [Google Scholar] [CrossRef]
- Zhao, J.; Ni, T.; Li, J.; Lu, Q.; Fang, Z.; Huang, Q.; Zhang, R.; Li, R.; Shen, B.; Shen, Q. Effects of organic–inorganic compound fertilizer with reduced chemical fertilizer application on crop yields, soil biological activity and bacterial community structure in a rice–wheat cropping system. Appl. Soil Ecol. 2016, 99, 1–12. [Google Scholar] [CrossRef]
- Jian, S.; Li, J.W.; Chen, J.; Wang, G.S.; Mayes, M.A.; Dzantor, K.E.; Hui, D.F.; Luo, Y.Q. Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis. Soil Biol. Biochem. 2016, 101, 32–43. [Google Scholar] [CrossRef] [Green Version]
- Boot, C.M.; Hall, E.K.; Denef, K.; Baron, J.S. Long-term reactive nitrogen loading alters soil carbon and microbial community properties in a subalpine forest ecosystem. Soil Biol. Biochem. 2016, 92, 211–220. [Google Scholar] [CrossRef]
- Fan, F.; Li, Z.; Wakelin, S.A.; Yu, W.; Liang, Y. Mineral fertilizer alters cellulolytic community structure and suppresses soil cellobiohydrolase activity in a long-term fertilization experiment. Soil Biol. Biochem. 2012, 55, 70–77. [Google Scholar] [CrossRef]
- Zhang, X.Y.; Dong, W.Y.; Dai, X.Q.; Schaeffer, S.; Yang, F.T.; Radosevich, M.; Xu, L.L.; Liu, X.Y.; Sun, X.M. Responses of absolute and specific soil enzyme activities to long term additions of organic and mineral fertilizer. Sci. Total Environ. 2015, 536, 59–67. [Google Scholar] [CrossRef]
- DeForest, J.L.; Smemo, K.A.; Burke, D.J.; Elliott, H.L.; Becker, J.C. Soil microbial responses to elevated phosphorus and pH in acidic temperate deciduous forests. Biogeochemistry 2012, 109, 189–202. [Google Scholar] [CrossRef]
- Ling, N.; Xue, C.; Huang, Q.W.; Yang, X.M.; Xu, Y.C.; Shen, Q.R. Development of a mode of application of bioorganic fertilizer for improving the biocontrol efficacy to Fusarium wilt. Biocontrol 2010, 55, 673–683. [Google Scholar] [CrossRef]
- Peng, Y.F.; Yu, P.; Li, X.X.; Li, C.J. Determination of the critical soil mineral nitrogen concentration for maximizing maize grain yield. Plant Soil 2013, 372, 41–51. [Google Scholar] [CrossRef]
- Murphy, J.; Riley, J. A modified single solution method for the determination of phosphate in natural waters. Anal. Chim. Acta 1962, 27, 31–36. [Google Scholar] [CrossRef]
- Nelson, D.W.; Sommers, L. Total carbon, organic carbon, and organic matter. In Chemical and Microbiological Properties, 2nd ed.; American Society of Agronomy: Madison, WI, USA, 1982; pp. 39–579. [Google Scholar]
- Frostegård, Å.; Bååth, E. The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol. Fertil. Soils 1996, 22, 59–65. [Google Scholar] [CrossRef]
- Zelles, L.; Bai, Q.Y.; Rackwitz, R.; Chadwick, D.; Beese, F. Determination of phospholipid-and lipopolysaccharide-derived fatty acids as an estimate of microbial biomass and community structures in soils. Biol. Fertil. Soils 1995, 19, 115–123. [Google Scholar] [CrossRef]
- Olsson, P.A. Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil. FEMS Microb. Ecol. 1999, 29, 303–310. [Google Scholar] [CrossRef]
- Kandeler, E.; Gerber, H. Short-term assay of soil urease activity using colorimetric determination of ammonium. Biol. Fertil. Soils 1988, 6, 68–72. [Google Scholar] [CrossRef]
- Gopal, M.; Gupta, A.; Arunachalam, V.; Magu, S.P. Impact of azadirachtin, an insecticidal allelochemical from neem on soil microflora, enzyme and respiratory activities. Bioresour. Technol. 2007, 98, 3154–3158. [Google Scholar] [CrossRef]
- Marx, M.C.; Wood, M.; Jarvis, S.C. A microplate fluorimetric assay for the study of enzyme diversity in soils. Soil Biol. Biochem. 2001, 33, 1633–1640. [Google Scholar] [CrossRef]
- Saiya-Cork, K.R.; Sinsabaugh, R.L.; Zak, D.R. The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil. Soil Biol. Biochem. 2002, 34, 1309–1315. [Google Scholar] [CrossRef]
- García-Ruiz, R.; Ochoa, V.; Hinojosa, M.B.; Carreira, J.A. Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems. Soil Biol. Biochem. 2008, 40, 2137–2145. [Google Scholar] [CrossRef]
- Lepš, J.; Šmilauer, P. Multivariate Analysis of Ecological Data Using CANOCO; Cambridge University Press: Cambridge, UK, 2003. [Google Scholar]
- Paustian, K.A.O.J.H.; Andrén, O.; Janzen, H.H.; Lal, R.; Smith, P.; Tian, G.; Tiessen, H.; Van, N.M.; Woomer, P.L. Agricultural soils as a sink to mitigate CO2 emissions. Soil Use Manag. 1997, 13, 230–244. [Google Scholar] [CrossRef]
- Liang, B.; Yang, X.Y.; He, X.H.; Zhou, J.B. Effects of 17 years fertilization on soil microbial biomass C and N and soluble organic C and N in loessial soil during maize growth. Biol. Fertil. Soils 2011, 47, 121–128. [Google Scholar] [CrossRef]
- Subehia, S.K.; Sepehya, S.; Rana, S.S.; Negi, S.C.; Sharma, S.K. Long-term effect of organic and inorganic fertilizers on rice (Oryza sativa L.)-wheat (Triticum aestivum L.) yield, and chemical properties of an acidic soil in the western Himalayas. Exp. Agric. 2013, 49, 382–394. [Google Scholar] [CrossRef]
- Triberti, L.; Nastri, A.; Giordani, G.; Comellini, F.; Baldoni, G.; Toderi, G. Can mineral and organic fertilization help sequestrate carbon dioxide in cropland? Eur. J. Agron. 2008, 29, 13–20. [Google Scholar] [CrossRef]
- Singh Brar, B.; Singh, J.; Singh, G.; Kaur, G. Effects of long term application of inorganic and organic fertilizers on soil organic carbon and physical properties in maize-wheat rotation. Agronomy 2015, 5, 220–238. [Google Scholar] [CrossRef]
- Williams, A.; Borjesso, G.; Hedlund, K. The effects of 55 years of different inorganic fertilizer regimes on soil properties and microbial community composition. Soil Biol. Biochem. 2013, 67, 41–46. [Google Scholar] [CrossRef]
- Bowles, T.M.; Acosta-Martínez, V.; Calderón, F.; Jackson, L.E. Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape. Soil Biol. Biochem. 2014, 68, 252–262. [Google Scholar] [CrossRef]
- Qin, H.; Lu, K.; Strong, P.J.; Xu, Q.; Wu, Q.; Xu, Z.; Wu, Q.F.; Xu, Z.X.; Xu, J.; Wang, H. Long-term fertilizer application effects on the soil, root arbuscular mycorrhizal fungi and community composition in rotation agriculture. Appl. Soil Ecol. 2015, 89, 35–43. [Google Scholar] [CrossRef]
- Bhadalung, N.N.; Suwanarit, A.; Dell, B.; Nopamornbodi, O.; Thamchaipenet, A.; Rungchuang, J. Effects of long-term NP-fertilization on abundance and diversity of arbuscular mycorrhizal fungi under a maize cropping system. Plant Soil 2005, 270, 371–382. [Google Scholar] [CrossRef]
- Lin, X.; Feng, Y.; Zhang, H.; Chen, R.; Wang, J.; Zhang, J.; Chu, H. Long-term balanced fertilization decreases arbuscular mycorrhizal fungal diversity in an arable soil in North China revealed by 454 pyrosequencing. Environ. Sci. Technol. 2012, 46, 5764–5771. [Google Scholar] [CrossRef]
- Corkidi, L.; Rowland, D.L.; Johnson, N.C.; Allen, E.B. Nitrogen fertilization alters the functioning of arbuscular mycorrhizas at two semiarid grasslands. Plant Soil 2002, 40, 299–310. [Google Scholar] [CrossRef]
- Chen, Y.L.; Zhang, X.; Ye, J.S.; Han, H.Y.; Wan, S.Q.; Chen, B.D. Six-year fertilization modifies the biodiversity of arbuscular mycorrhizal fungi in a temperate steppe in Inner Mongolia. Soil Biol. Biochem. 2014, 69, 371–381. [Google Scholar] [CrossRef]
- Toljander, J.F.; Santos-González, J.C.; Tehler, A.; Finlay, R.D. Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial. FEMS Microb. Ecol. 2008, 65, 323–338. [Google Scholar] [CrossRef] [Green Version]
- Helgason, T.; Fitter, A.H. Natural selection and the evolutionary ecology of the arbuscular mycorrhizal fungi (Phylum Glomeromycota). J. Exp. Bot. 2009, 60, 2465–2480. [Google Scholar] [CrossRef] [Green Version]
- Bardgett, R. The Biology of Soil: A Community and Ecosystem Approach; Oxford University Press: Oxford, UK, 2005. [Google Scholar]
- Lauber, C.L.; Ramirez, K.S.; Aanderud, Z.; Lennon, J.; Fierer, N. Temporal variability in soil microbial communities across land-use types. ISME J. 2013, 7, 1641. [Google Scholar] [CrossRef]
- Bei, S.; Zhang, Y.; Li, T.; Christie, P.; Li, X.; Zhang, J. Response of the soil microbial community to different fertilizer inputs in a wheat-maize rotation on a calcareous soil. Agric. Ecosys. Environ. 2018, 260, 58–69. [Google Scholar] [CrossRef]
- Shi, P.; Wang, S.P.; Jia, S.G.; Gao, Q. Effect of 25-year fertilization on soil microbial biomass and community structure in a continuous corn cropping system. Arch. Agron. Soil Sci. 2015, 61, 1303–1317. [Google Scholar] [CrossRef]
- Smith, A.P.; Marín-Spiotta, E.; Balser, T. Successional and seasonal variations in soil and litter microbial community structure and function during tropical post agricultural forest regeneration: A multiyear study. Glob. Chang. Boil. 2015, 21, 3532–3547. [Google Scholar] [CrossRef]
- Reardon, C.L.; Wuest, S.B. Soil amendments yield persisting effects on the microbial communities–a 7-year study. Appl. Soil Ecol. 2016, 101, 107–116. [Google Scholar] [CrossRef]
- Allison, S.D.; Martiny, J.B.H. Resistance, resilience, and redundancy in microbial communities. Pro. Natl. Acad. Sci. USA 2008, 105, 1512–11519. [Google Scholar] [CrossRef]
- Saison, C.; Degrange, V.; Oliver, R.; Millard, P.; Commeaux, C.; Montange, D.; Roux, X.L. Alteration and resilience of the soil microbial community following compost amendment: Effects of compost level and compost-borne microbial community. Environ. Microbiol. 2006, 8, 247–257. [Google Scholar] [CrossRef]
- Schloter, M.; Dilly, O.; Munch, J.K. Indicators for evaluating soil quality. Agric. Ecosyst. Environ. 2003, 98, 255–262. [Google Scholar] [CrossRef]
- Burger, M.; Jackson, L.E. Microbial immobilization of ammonium and nitrate in relation to ammonification and nitrification rates in organic and conventional cropping systems. Soil Biol. Biochem. 2003, 35, 29–36. [Google Scholar] [CrossRef]
- McSherry, M.E.; Rithcie, M.E. Effects of grazing on grassland soil carbon: A global review. Glob. Chang. Boil. 2013, 19, 1347–1357. [Google Scholar] [CrossRef]
- Liu, E.; Yan, C.R.; Mei, X.R.; He, W.Q.; Bing, S.H.; Ding, L.P.; Liu, Q.; Liu, S.; Fan, T.L. Long-term effect of chemical fertilizer, straw, and manure on soil chemical and biological properties in northwest China. Geoderma 2010, 158, 173–180. [Google Scholar] [CrossRef]
- Ge, G.F.; Li, Z.F.; Fan, F.L.; Chu, G.X.; Hou, Z.N.; Liang, Y.C. Soil biological activity and their seasonal variations in response to long-term application of organic and inorganic fertilizers. Plant Soil 2010, 326, 31–44. [Google Scholar] [CrossRef]
- Saha, S.; Prakash, V.; Kundu, S.; Kumar, N.; Mina, B.L. Soil enzymatic activity as affected by long term application of farm yard manure and mineral fertilizer under a rainfed soybean–wheat system in NW Himalaya. Eur. J. Soil Biol. 2008, 44, 309–315. [Google Scholar] [CrossRef]
Source of Variation | Total PLFA | Bacteria | Fungi | AMF | Invertase | Urease | AG | CBH | XYL | GMea |
---|---|---|---|---|---|---|---|---|---|---|
Treatment (T) | 3.7 * | 3.5 * | 2.2 | 4.0 ** | 2.1 | 1.4 | 7.4 *** | 8.7 *** | 10.8 *** | 7.3 *** |
Year (Y) | 0.7 | 0.3 | 0.4 | 15.5 *** | 9.8 *** | 29.0 *** | 17.3 *** | 5.5 ** | 6.3 ** | 24.9 *** |
Crop species (C) | 11.0 ** | 11.3 ** | 6.2 * | 6.7 * | 1.5 | 0.3 | 61.5 *** | 65.5 *** | 71.9 *** | 34.0 *** |
T × Y | 0.6 | 0.7 | 0.6 | 1.9 | 0.8 | 0.7 | 1.7 | 2.7 * | 2.5 * | 2.5 * |
T × C | 1.0 | 1.0 | 0.6 | 1.5 | 0.6 | 1.2 | 1.8 | 1.8 | 1.7 | 1.0 |
Y × C | 19.4 *** | 15.4 *** | 11.5 *** | 13.2 *** | 8.8 *** | 4.3 | 1.7 | 1.3 | 2.7 | 1.4 |
© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
Share and Cite
Zhang, Y.; Li, T.; Wu, H.; Bei, S.; Zhang, J.; Li, X. Effect of Different Fertilization Practices on Soil Microbial Community in a Wheat–Maize Rotation System. Sustainability 2019, 11, 4088. https://doi.org/10.3390/su11154088
Zhang Y, Li T, Wu H, Bei S, Zhang J, Li X. Effect of Different Fertilization Practices on Soil Microbial Community in a Wheat–Maize Rotation System. Sustainability. 2019; 11(15):4088. https://doi.org/10.3390/su11154088
Chicago/Turabian StyleZhang, Yunlong, Tengteng Li, Honghui Wu, Shuikuan Bei, Junling Zhang, and Xiaolin Li. 2019. "Effect of Different Fertilization Practices on Soil Microbial Community in a Wheat–Maize Rotation System" Sustainability 11, no. 15: 4088. https://doi.org/10.3390/su11154088