Double Heterozygosity for Germline Mutations in Chinese Breast Cancer Patients
Abstract
:Simple Summary
Abstract
1. Introduction
2. Methods
2.1. Participants and Selection Criteria
2.2. DNA Extraction and Sequencing
2.3. Variant Interpretation and Annotation
2.4. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Patient ID | Gene | Pathogenic Variants | VAF | Personal Cancer (Age of Diagnosis) | Metastasis or Relapse | Breast (Histology/ ER/PR/HER2) | Family Cancer History * (Age of Diagnosis) |
---|---|---|---|---|---|---|---|
001 | BRCA1 TP53 | c.5089T>C; p.Cys1697Arg c.541C>T; p.Arg181Cys | 37.1 55.1 | Bilateral Breast (36 42) | N/N | IDC/+/+/− IDC/+/+/− | Lung (57) Ovarian (UK) Testis (85) |
002 | BRCA1 BRCA1 | c.4065_4068delTCAA; p.Asn1355Lysfs * 10 c.5406+7A>G; r.5333_5406del74; p.Asp1778Glyfs * 27 | 54.1 43.2 | Breast (44) Ovarian (43) | N/Y | IDC/−/−/− | Ovarian and Breast (52 55) Cervical (35) Cervical (45) |
003 | BRCA1 BRCA2 | c.5511G>C; p.Trp1837Cys c.7471C>T; p.Gln2491 * | Via Sanger sequencing | Bilateral Breast (38) | N/N | IDC/−/−/− DCIS/+/−/− | Breast (39) Breast and Lung (41 50) Breast (45) Breast (64) Bilateral Breast (55) Prostate (UK) Lung (UK) |
004 | BRIP1 TP53 | c.2392C>T; p.Arg798 * c.529_546del; p.Pro177_Cys182del | 58.0 33.1 | Bilateral Breast (30 34) Lung (37) | N/N | IDC/+/+/+ IDC/+/+/+ | Prostate (59) Larynx (53) Lung (50) Lung and Stomach (73 UK) |
005 | BRCA1 PALB2 | c.3286C>T; p.Gln1096 * c.857delC; p.Pro286Leufs * 2 | 47.4 48.7 | Bilateral Breast (30 32) Ovarian (48) Laryngeal (58) | N/N | IDC/−/UK/UK IDC/−/UK/UK | Bilateral Breast (35 38) |
006 | BRCA1 CDH1 | c.3627dupA; p.Glu1210Argfs * 9 Dup exon 3–16 | 46.5 NA | Breast (41) | N/N | IDC/−/−/− | Breast (44) Ovarian (UK) Uterus and Ovarian (UK) |
007 | ATM BRCA2 | c.7515+1G>T; r.7308_7515del208; p.Tyr2437Glufs * 4 c.262_263delCT; p.Leu88Alafs * 12 | 50.2 37.7 | Breast (33) | N/N | IDC/+/+/− | Cancer of unknown primary (17) |
008 | BRCA1 CHEK2 | c.3531dupT; p.Ser1178 * c.1461+1G>A; r.1376_1461del86; p.Ala459Glyfs * 2 | 48.9 40.2 | Ovarian (63) Breast (69) Liver (72) | N/N | IDC/+/+/+ | Breast and Ovarian (49) Ovarian (45) Lymphoma (42) Gallbladder (66) Lymphoma (55) Breast (36) |
009 | BRCA1 MSH6 | c.3342_3345del; p.Glu1115 * c.3013C>T; p.Arg1005 * | 51.3 52.0 | Breast (34) | N/N | IDC/−/−/− | Larynx (47) |
Patients Characteristics | Double Mutations (N = 9) | Single Mutation (N = 511) | Total (N = 520) | p-Value |
---|---|---|---|---|
Diagnosis age | ||||
Median | 36 | 41 | 40.5 | 0.213 |
Range | 30–69 | 18–79 | 18–79 | |
Multiple personal cancers | ||||
Yes | 4 (44.4%) | 97 (19.0%) | 100 (19.2%) | 0.076 |
No | 5 (55.6%) | 414 (81.0%) | 420 (80.%) | |
1st- or 2nd-degree family history of breast cancer | ||||
Yes | 4 (44.4%) | 295 (57.7%) | 299 (57.5%) | 0.505 |
No | 5 (55.6%) | 216 (42.3%) | 221 (42.5%) | |
1st- or 2nd-degree family history of ovarian cancer | ||||
Yes | 4 (44.4%) | 73 (14.3%) | 77 (14.8%) | 0.031 |
No | 5 (55.6%) | 438 (85.7%) | 443 (85.2%) | |
1st- or 2nd-degree family history of prostate cancer | ||||
Yes | 2 (22.2%) | 45 (8.8%) | 47 (9.0%) | 0.192 |
No | 7 (77.8%) | 466 (91.2%) | 473 (91.0%) | |
Bilateral breast cancer | ||||
Yes | 4 (44.4%) | 148 (29.0%) | 152 (29.2%) | 0.295 |
No | 5 (55.6%) | 363 (71.0%) | 368 (70.8%) | |
Tumor Characteristics | Double Mutations N = 13 | Single Mutation N = 659 | Total N = 672 | p-Value |
Stage | ||||
0 | 1 (8.3%) | 89 (14.2%) | 90 (14.1%) | 0.897 |
1 | 5 (41.7%) | 233 (37.2%) | 238 (37.3%) | |
2 | 4 (33.3%) | 224 (35.7%) | 228 (35.7%) | |
3 | 2 (16.7%) | 61 (9.7%) | 63 (9.9%) | |
4 | 0 (0%) | 20 (3.2%) | 20 (3.1%) | |
Not stated | 1 | 32 | 33 | |
Histology | ||||
ductal | 12 (92.3%) | 492 (77.2%) | 504 (77.5%) | 0.689 |
in-situ | 1 (7.7%) | 81 (12.7%) | 82 (12.6%) | |
other | 0 (0%) | 64 (10.1%) | 64 (9.9%) | |
Not stated | 0 | 22 | 22 | |
Invasive grade | ||||
1 | 1 (10.0%) | 25 (5.4%) | 26 (5.5%) | 0.459 |
2 | 3 (30.0%) | 189 (40.7) | 192 (40.4%) | |
3 | 6 (60.0%) | 251 (54.0) | 257 (54.1%) | |
Not stated | 2 | 113 | 115 | |
ER | ||||
Neg | 6 (46.2%) | 219 (36.6%) | 225 (36.8%) | 0.564 |
Pos | 7 (53.9%) | 379 (63.4%) | 386 (63.2%) | |
Not stated | 0 | 61 | 61 | |
PR | ||||
Neg | 5 (45.5%) | 285 (48.8%) | 290 (48.7%) | 1.000 |
Pos | 6 (54.6%) | 299 (51.2%) | 305 (51.3%) | |
Not stated | 2 | 75 | 77 | |
Her2 | ||||
Neg | 8 (72.7%) | 432 (77.3%) | 440 (77.2%) | 0.515 |
Equivocal | 0 (0%) | 44 (7.9%) | 44 (7.7%) | |
Pos | 3 (27.3%) | 83 (14.9%) | 86 (15.1%) | |
Not stated | 2 | 100 | 102 | |
TNBC | ||||
Yes | 4 (40.0%) | 157 (30.0%) | 372 (69.8%) | 0.499 |
No | 6 (60.0%) | 366 (70.0%) | 161 (30.2%) | |
Not stated | 2 | 51 | 57 |
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Kwong, A.; Ho, C.Y.S.; Au, C.-H.; Ma, E.S.K. Double Heterozygosity for Germline Mutations in Chinese Breast Cancer Patients. Cancers 2024, 16, 2547. https://doi.org/10.3390/cancers16142547
Kwong A, Ho CYS, Au C-H, Ma ESK. Double Heterozygosity for Germline Mutations in Chinese Breast Cancer Patients. Cancers. 2024; 16(14):2547. https://doi.org/10.3390/cancers16142547
Chicago/Turabian StyleKwong, Ava, Cecilia Y. S. Ho, Chun-Hang Au, and Edmond S. K. Ma. 2024. "Double Heterozygosity for Germline Mutations in Chinese Breast Cancer Patients" Cancers 16, no. 14: 2547. https://doi.org/10.3390/cancers16142547
APA StyleKwong, A., Ho, C. Y. S., Au, C. -H., & Ma, E. S. K. (2024). Double Heterozygosity for Germline Mutations in Chinese Breast Cancer Patients. Cancers, 16(14), 2547. https://doi.org/10.3390/cancers16142547