Genome-Wide Identification, Characterization, and Expression Analysis under Abiotic Stresses of the UBP Gene Family in Rice (Oryza sativa L.)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Identification of the OsUBP Family Genes
2.2. Phylogenetic Relationship, Protein Domain, and Gene Structure Analysis
2.3. Chromosomal Location, Synteny, and Ka/Ks Analysis
2.4. Cis-Element, GO Annotation, and Protein Interaction Analysis
2.5. Expression Analysis
2.6. Real-Time PCR Analysis
3. Results
3.1. Characteristics and Phylogenetic Analysis of OsUBPs
3.2. Conserved Domains and Gene Structure Analysis of OsUBPs
3.3. Chromosomal Location and Synteny Analysis of OsUBPs
3.4. Cis-Element Analysis of OsUBPs
3.5. GO Annotation and Protein–Protein Interaction Network of OsUBPs
3.6. Expression Patterns of OsUBPs in Different Tissues
3.7. Expression Patterns of OsUBPs under Abiotic Stresses
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Zou, X.; Li, Y.; Yin, H.; Xu, J.; Li, Z.; Jiang, S.; Chen, F.; Li, Y.; Xiao, W.; Liu, S.; et al. Genome-Wide Identification, Characterization, and Expression Analysis under Abiotic Stresses of the UBP Gene Family in Rice (Oryza sativa L.). Agronomy 2023, 13, 2809. https://doi.org/10.3390/agronomy13112809
Zou X, Li Y, Yin H, Xu J, Li Z, Jiang S, Chen F, Li Y, Xiao W, Liu S, et al. Genome-Wide Identification, Characterization, and Expression Analysis under Abiotic Stresses of the UBP Gene Family in Rice (Oryza sativa L.). Agronomy. 2023; 13(11):2809. https://doi.org/10.3390/agronomy13112809
Chicago/Turabian StyleZou, Xiaoxiao, Yongliang Li, Huangping Yin, Jiajin Xu, Zeqi Li, Shuai Jiang, Fenglin Chen, You Li, Wenjun Xiao, Shucan Liu, and et al. 2023. "Genome-Wide Identification, Characterization, and Expression Analysis under Abiotic Stresses of the UBP Gene Family in Rice (Oryza sativa L.)" Agronomy 13, no. 11: 2809. https://doi.org/10.3390/agronomy13112809