Differences in Early Root Endophytic Bacterial Communities between Japanese Sake Rice Cultivars and Table Rice Cultivars
Abstract
:1. Introduction
2. Materials and Methods
2.1. Soil Collection and Processing
2.2. Pre-Incubation of Soil and Experimental Set-Up
2.3. Sample Collection
2.4. DNA Extraction and Sequencing
2.5. Bioinformatics and Statistical Analysis
3. Results and Discussion
3.1. Bacterial Community Compositions
3.2. Bacterial Diversity
3.3. Shared and Unique Endophytic Bacterial Taxa
3.4. Effects of Rice Types, Cultivars, and Time
3.5. Predominant Endophytic Bacterial Taxa
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Type | Cultivar Name | Abbreviation | Source | JP No. *1 | Origin |
---|---|---|---|---|---|
Sake rice | Gohyakumangoku | Goh | NARO *2 | 15142 | Niigata, Japan |
Kamenoo *3 | Kam | NARO | 5567 | Aomori, Japan | |
Omachi | Oma | NARO | 7529 | Okayama, Japan | |
Yamadanishiki | Yam | NARO | 6958 | Hyogo, Japan | |
Table rice | Koshihikari | Kos | Nouken *4 | − | Toyama, Japan |
Nipponbare | Nip | NARO | 9046 | Aichi, Japan |
Factor | Df | F Value |
---|---|---|
Week | 2 | 32.91 *** |
Cultivar | 5 | 2.10 |
Week × Cultivar | 10 | 2.79 * |
Residual | 36 |
0 W | 3 W | 6 W | |||||
---|---|---|---|---|---|---|---|
Factor | Df | R2 | F | R2 | F | R2 | F |
Rice type | 1 | 0.10 | 3.11 ** | 0.09 | 1.91 * | 0.10 | 1.97 *** |
Cultivar (nested in Rice type) | 4 | 0.53 | 4.25 *** | 0.36 | 1.94 *** | 0.35 | 1.78 *** |
Residual | 12 | 0.37 | 0.55 | 0.55 |
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Sokel, S.; Samuel, S.O.; Suzuki, K.; Harada, N. Differences in Early Root Endophytic Bacterial Communities between Japanese Sake Rice Cultivars and Table Rice Cultivars. Agronomy 2024, 14, 1769. https://doi.org/10.3390/agronomy14081769
Sokel S, Samuel SO, Suzuki K, Harada N. Differences in Early Root Endophytic Bacterial Communities between Japanese Sake Rice Cultivars and Table Rice Cultivars. Agronomy. 2024; 14(8):1769. https://doi.org/10.3390/agronomy14081769
Chicago/Turabian StyleSokel, Sibel, Solomon Oloruntoba Samuel, Kazuki Suzuki, and Naoki Harada. 2024. "Differences in Early Root Endophytic Bacterial Communities between Japanese Sake Rice Cultivars and Table Rice Cultivars" Agronomy 14, no. 8: 1769. https://doi.org/10.3390/agronomy14081769