Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq)
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Material
2.2. Preparation and Resequencing of DNA Libraries
2.3. Data Analysis
2.4. Population Genetic Analysis
2.5. Core Germplasm Screening
2.6. Analysis of Genetic Diversity in the Core Germplasm
3. Results
3.1. Assessment of the Quality of the Resequencing Data from 102 Garlic Genomes
3.2. Phylogenetic and Principal Component Analyses of 102 Garlic Genomes
3.3. Population Structure and Genetic Relationship Analyses of 102 Garlic Genomes
3.4. Analysis of the Genetic Diversity between Groups
3.5. Core Material Screening
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Yang, J.; Sun, M.; Ren, X.; Li, P.; Hui, J.; Zhang, J.; Lin, G. Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq). Genes 2024, 15, 1135. https://doi.org/10.3390/genes15091135
Yang J, Sun M, Ren X, Li P, Hui J, Zhang J, Lin G. Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq). Genes. 2024; 15(9):1135. https://doi.org/10.3390/genes15091135
Chicago/Turabian StyleYang, Jing, Meile Sun, Xiangrong Ren, Pengbing Li, Jingtao Hui, Jun Zhang, and Guocang Lin. 2024. "Revealing the Genetic Diversity and Population Structure of Garlic Resource Cultivars and Screening of Core Cultivars Based on Specific Length Amplified Fragment Sequencing (SLAF-Seq)" Genes 15, no. 9: 1135. https://doi.org/10.3390/genes15091135