Microbial Networks Reveal the Structure of Water Microbial Communities in Kalamaili Mountain Ungulate Nature Reserve
Abstract
:1. Introduction
2. Materials and Methods
2.1. Experimental Management
2.2. Sampling and Analysis
2.2.1. Sampling
2.2.2. 16S rDNA Sequencing and Water Microbiota Analysis
2.2.3. Construction and Visualization of Co-Occurrence Ecology Networks
2.3. Statistical Analysis
3. Results
3.1. Microbial Diversity
3.2. Differential Analysis
3.3. Water Microbial Co-Occurrence Network
3.4. Topological Roles
4. Discussion
4.1. Microbial Community Structure Characteristics of Water
4.2. Microbial Co-Occurrence Network Composition of Water
4.3. Microbial Co-Occurrence Network Topological Roles of Water
4.4. Microbial Co-Occurrence Network Modular Structures of Water
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Item | Empirical Network | Random Network | |||||||
---|---|---|---|---|---|---|---|---|---|
Network Size (Node) | Network Size (Edge) | Average Degree (avgK) | Average Clustering Coefficient (avgCC) | Average Path Distance (GD) | Modularity (No. of Modules) | Average Clustering Coefficient (avgCC) | Average Path Distance (GD) | Modularity | |
NRE | 1532 | 67874 | 88.61 | 0.798 | 3.033 | 0.751 (15) | 0.0579 ± 0.0002 | 1.9477 ± 0.0001 | 0.0489 ± 0.0013 |
ARE | 1453 | 53127 | 73.13 | 0.734 | 3.144 | 0.720 (13) | 0.0504 ± 0.0002 | 1.9735 ± 0.0002 | 0.0574 ± 0.0014 |
ARC | 353 | 5195 | 29.43 | 0.969 | 1.024 | 0.720 (18) | 0.0837 ± 0.0012 | 1.9943 ± 0.0014 | 0.1233 ± 0.0047 |
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Xiong, Y.; Tang, L.; Jia, H.; Shao, C.; Tang, J.; Xu, Y.; Yan, L.; Zhang, D. Microbial Networks Reveal the Structure of Water Microbial Communities in Kalamaili Mountain Ungulate Nature Reserve. Water 2022, 14, 2188. https://doi.org/10.3390/w14142188
Xiong Y, Tang L, Jia H, Shao C, Tang J, Xu Y, Yan L, Zhang D. Microbial Networks Reveal the Structure of Water Microbial Communities in Kalamaili Mountain Ungulate Nature Reserve. Water. 2022; 14(14):2188. https://doi.org/10.3390/w14142188
Chicago/Turabian StyleXiong, Yu, Liping Tang, Huiping Jia, Changliang Shao, Junyu Tang, Yanping Xu, Liping Yan, and Dong Zhang. 2022. "Microbial Networks Reveal the Structure of Water Microbial Communities in Kalamaili Mountain Ungulate Nature Reserve" Water 14, no. 14: 2188. https://doi.org/10.3390/w14142188