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Article

Morphological and Molecular Analysis of Australian Earwigs (Dermaptera) Points to Unique Species and Regional Endemism in the Anisolabididae Family

1
School of BioSciences, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria 3052, Australia
2
Agriculture and Food Business Unit, Commonwealth Scientific and Industrial Research Organisation, Black Mountain, Australian Capital Territory 2601, Australia
3
Cesar, 293 Royal Parade, Parkville, Victoria 3052, Australia
4
New South Wales Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Charles Sturt University, New South Wales 2795, Australia
5
Department of Primary Industries and Regional Development, South Perth, Western Australia 6151, Australia
6
School of Agriculture, Food and Wine, the University of Adelaide, Urrbrae, South Australia 5064, Australia
7
School of Life Science, College of Science, Health and Engineering, La Trobe University, Bundoora, Victoria 3086, Australia
8
South Australian Research and Development Institute, Entomology, Waite Road, Waite, Urrbrae, South Australia 5064, Australia
*
Author to whom correspondence should be addressed.
Insects 2019, 10(3), 72; https://doi.org/10.3390/insects10030072
Submission received: 1 February 2019 / Revised: 3 March 2019 / Accepted: 7 March 2019 / Published: 14 March 2019

Abstract

:
Dermaptera (earwigs) from the Anisolabididae family may be important for pest control but their taxonomy and status in Australia is poorly studied. Here we used taxonomic information to assess the diversity of southern Australian Anisolabididae and then applied cox1 barcodes as well as additional gene fragments (mitochondrial and nuclear) to corroborate classification and assess the monophyly of the putative genera. Anisolabididae morphospecies fell into two genera, Anisolabis Fieber and Gonolabis Burr, based on paramere morphology. Combinations of paramere and forceps morphology distinguished seven morphospecies, which were further supported by morphometric analyses. The morphospecies were corroborated by barcode data; all showed within-species genetic distance < 4% and between-species genetic distance > 10%. Molecular phylogenies did not support monophyly of putative genera nor clades based on paramere shape, instead pointing to regional clades distinguishable by forceps morphology. This apparent endemism needs to be further tested by sampling of earwig diversity outside of agricultural production regions but points to a unique regional insect fauna potentially important in pest control.

1. Introduction

Dermaptera (earwigs) represent a cosmopolitan [1], but understudied, insect order, totalling roughly 1930 species worldwide [2]. Comprehensive lists of dermapteran fauna are few, the most recent text being Steinmann’s World Catalogue of Dermaptera [3] as well as Haas’ online database [4]. Steinmann also authored selected volumes of the monograph series, Das Tierreich, which are considered the most recent comprehensive taxonomic works for Dermaptera [5,6,7,8]. Cassis [9] has most recently reviewed the Australian Dermaptera. He accounts for 85 species, 36 genera, and 18 subfamilies representing 7 of the 9 families recognised by Haas [10], while Haas’ database lists 88 species [11]. The most speciose families in Australia are the Anisolabididae and Spongiphoridae (=Labiidae; [6]), of which many specimens remain undescribed [9]. Cassis [9] lists 20 species of Anisolabididae in six genera in Australia, while Haas [11] puts this count at 32 species in 10 genera. Aside from this, there are very few works available that catalogue Australian Dermaptera, although such works do exist [12] (p. 364). Further, the phylogeny of the order is obscure. Numerous conflicting family arrangements have been proposed [13]. The two epizoic taxa, Hemimerina and Arixeniina, were previously considered suborders [10,14,15] because of their distinctive superficial morphology and lifestyle, or were not considered at all [3,5]. These have been reconsidered as highly derived sister taxa to other extant families [16,17,18], in line with Popham’s [19] morphological analysis. Molecular phylogenetic studies have typically been of insufficient depth to resolve generic relationships but have made progress towards resolving the familial phylogeny, which has undergone several recent revisions [16,17,18]. Dermaptera have recently come to the attention of the Australian grains industry where they are regarded as both pest and beneficial insects. Reports of crop damage by Forficula auricularia L. (Forficulidae), the European earwig, have become common over the last two decades [20], and this species is listed as an economically significant pest in Australia [21]. The Australian native Nala lividipes Dufour (Labiduridae), the black field earwig, is regarded as a pest of grain sorghum [22]. Euborellia annulipes (Lucas), a cosmopolitan species found in Australia [9] is a known pest of cultivated plants in Europe [23], but its status in Australia is unknown. Forficula auricularia is also considered a predator of several orchard pest arthropods [24,25,26,27,28,29,30]; N. lividipes is also considered a predator [31] along with confamilials Labidura riparia Pallas [32] and Labidura truncata Kirby [33]. We treat L. truncata as a distinct species following Giles and Webb’s [34] finding that its karyotype differs from L. riparia, although L. riparia shows karyotypic variation (see [35] and references therein) and not all authors accept the name L. truncata [36]. In addition, many earwigs have never been identified to species and their taxonomic status and agricultural importance remain unknown.
Among the earwigs collected from southern Australian grains systems, some species including F. auricularia, L. truncata, and N. lividipes have been collected and can be identified morphologically, but morphological characterization of many adult specimens remains incomplete. The most easily distinguished structure of dermapteran anatomy is the forceps, representing sclerotised, non-segmented cerci that are curved and exaggerated in males and straight and reduced in females [14], which play a role in male-male competition and in male displays to females [37,38]. This sexual dimorphism, as well as intrasexual male polymorphism in some species [39,40], make it difficult to delineate morphospecies based on these structures, particularly in mixed sex samples. Male genital morphology, while less apparent, is another trait used for distinguishing Dermaptera from each other at all taxonomic levels [41,42], although for some closely related species, male genital morphology may be uniform despite superficial morphological differences [43]. These two traits are both male-specific traits, and so female morphology is often overlooked in dermapteran taxonomy.
While molecular data have helped in resolving dermapteran phylogeny [13,16,17,18], they have not been used much in dermapteran biodiversity research. While DNA barcoding involving short nucleotide fragments has generally provided an aid to species identification and delineation of cryptic species [44], the approach has been criticised for a variety of reasons [45,46,47,48,49] and barcodes may suffer from considerable Type I and II errors depending on taxonomic knowledge and sampling of a clade [50]. A barcode gap, a lack of overlap between intra- and interspecific genetic distance which is crucial to barcoding’s utility, is not always found for a given set of taxa [51], and gene trees estimated using barcodes may not agree with well-established phylogenies [51]. Nevertheless, barcoding is common practice in contemporary invertebrate systematics [52,53,54,55], and represents just one type of molecular tool that can be employed; molecular (particularly mtDNA) evidence in taxonomic, systematic, and biodiversity research predates ‘barcoding’ in the literature by several years [56].
In this study, we analysed earwig samples from grains production areas of southern Australia to assess species diversity based on morphological information and further corroborate this diversity with molecular data. We then used multiple markers, mitochondrial and nuclear, to develop a molecular phylogeny of a subset of dermapteran diversity. These analyses provide the basis for describing earwig diversity in grains systems by highlighting the importance of regional endemism in earwigs. They should help to underpin future studies on the pest and beneficial status of different earwig taxa.

2. Materials and Methods

2.1. Sampling, Identification, and Morphology

We obtained whole adult specimens from surveys of dermapteran fauna in Victoria, New South Wales (NSW), South Australia (SA), and Western Australia (WA). Surveys comprised two types: a bi-annual (summer and winter) sample of representative sites across each state to investigate spatial variation in species composition and abundance, and a monthly sample of a reduced set of sites to investigate temporal variation. The collections from which adult Anisolabididae were sourced occurred from July 2016 to October 2018. Field sites covered the breadth of the Australian grain belt, except Queensland (Table S1 and Figure S1). Surveys were conducted using cardboard roll traps (a method developed for F. auricularia [57]) and pitfall traps (diameter = 4 cm, depth = 10.8 cm) filled with 50 mL 100% propylene glycol, both left at sites for a period of seven days each time. Specimens were stored in 100% ethanol at −20 °C. Specimens from pitfall traps were washed thoroughly with 100% ethanol prior to storage.
Males were distinguished from females based on forceps morphology, then classified into 10 morphospecies. Three (F. auricularia, L. truncata, and N. lividipes) were easily identified, particularly as only one of the cryptic sister species of F. auricularia [58] occurs in Australia [59]. The remaining earwigs were members of the Anisolabididae family, based on the lack of wings in the adult stage [6,9]. Generic and specific assignments were based on combinations of shapes of the male forceps and genitalia (Figure 1) following [6]. Some morphospecies could be identified to species, while others only to genus, and they are designated numerically. The Anisolabididae morphospecies were Anisolabis sp. 1, Anisolabis sp. 2, Gonolabis forcipata Burr (=Mongolabis forcipata [60]), Gonolabis nr. gilesi Steinmann (=Mongolabis nr. gilesi [60]), Gonolabis sp. 1, Gonolabis sp. 2, and Gonolabis sp. 3. A single male Anisolabis maritima (Bonelli) was found in Western Australia (site #6; Table S1 and Figure S1). As this is a well-known and recognisable species, it was not included in subsequent molecular or morphometric analysis which aimed to clarify the phylogeny and test the ability of available resources to distinguish the unknown Anisolabididae. It should be noted that, thus far, the Anisolabididae have not received a comprehensive phylogenetic, numerical, or cladistic treatment, and so any identification must be deemed provisional. To this end, it is noted that Srivastava’s [60] revision of Anisolabididae systematics would likely give different generic classifications. Dermaptera is an order rife with nomenclatural problems, and so it is difficult to treat any one text as authoritative. Specimens were pooled across sites and collection dates by morphospecies for subsequent morphometric and molecular analysis.
To test if the characters used for distinguishing morphospecies could be linked to other forms of morphometric measures, linear measurements were taken for all males (Figure 1) to assess the length (o) and width (p) of both of the forceps, the distance between the points of articulation of the forceps and the ultimate dorsal tergite (q), and the length (r) and width (s) of the right paramere. An index of the asymmetry of the forceps was calculated as the sum of the absolute differences between the greater of the two forceps lengths (o) and widths (p), divided by (q). The ratio of the right paramere’s length to its width was calculated, as well as the ratio of the maximum forceps length to the maximum forceps width. Typically, forceps asymmetry is measured by the absolute difference between the distances from the point of articulation to the tips of the forceps [40,61] but due to differences in body size between morphospecies and in the dimension of asymmetry (i.e., asymmetry in length, width, or both), a measure incorporating the two was deemed more appropriate. The final variables used for PCA were the forceps asymmetry index, the paramere length-width ratio, the basal width of the forceps, and the forceps length-width ratio.
Twenty-four hours prior to any dissection, specimens were transferred to 70% ethanol to make them more pliable. Parameres were removed by gently lifting the penultimate abdominal sternite and pulling out the entire male genitalia by its attachment to the sperm duct with forceps, and then cutting at the site of attachment. Photos were taken of male forceps and parameres with an IS500 5.0-megapixel camera (Tuscen Photonics, Fuzhou, China) attached to a SMZ1500 stereomicroscope (Nikon, Tokyo, Japan) with a C-Mount Adapter 0.45X (Nikon, Tokyo, Japan) at 40× and 80× respectively, using ISCapture version 4.1.3 (Tuscen Photonics, Fuzhou, China). A scale bar was photographed at each magnification. To assist repeatability of measurements, the material (either the dissected genitalia or the whole body of the adult specimen) was aligned along its anteroposterior axis to a digital graticule. All photos were taken from the dorsal side. Following this, all specimens were returned to 100% ethanol. Measurements were then taken from the photos using Fiji [62] with the appropriate scale photo used to set the measurement scale (pixels mm−1). For length and width measurements (Figure 1o,p,r,s), a bounding box was drawn encompassing the total vertical and horizontal width of each of the forceps and the right paramere. For the forceps, both forceps were measured, and the largest was taken. A random subset of 30 individuals was remeasured twice in a random order to assess repeatability. Intraclass correlation coefficients were calculated for each measurement, and these ranged from 0.713 (length of the left forceps) to 0.999 (length of the right forceps). Principal component analysis was performed on the scaled and centred morphometric variables. Excluding individuals with missing measurements (damaged forceps or parameres) the morphometric dataset comprised 124 male Anisolabididae specimens.
Having morphospecies defined a priori permits a classification analysis. A discriminant function analysis was performed with the morphometric dataset to assess the efficiency of simple linear measurements for species assignments. A first test was performed to assign morphospecies to putative genus, and then to putative species. In the case of the Gonolabis morphospecies, analyses were run both including and excluding G. sp. 3 as this morphospecies was only represented by three individuals, to assess the effect of a small class size on classification accuracy. For each case, the analysis was performed using the whole dataset to assess variable importance, and then with jack-knife cross-validation to assess classification accuracy. Note that classification accuracy was not assessed using a pre-defined proportion of training and test observations, because of the small size of the datasets (total N = 124, NAnisoalbis = 30, NGonolabis = 94 or 91 excluding G. sp. 3).

2.2. Barcoding

To corroborate the morphospecies assignment by male characters, sequences of a 658 bp fragment of the cytochrome c oxidase subunit 1 gene (cox1) were obtained from selected individuals of each morphospecies across the sites at which they were found. Known species (F. auricularia, N. lividipes, L. truncata) were barcoded first. A few individuals (1–4, depending on the abundance at a site) were sequenced from at least 3 populations in each state to assess the barcode gap for widely distributed species. While barcode gaps may hold in the face of broad distributions [63,64], it is unknown how geographically structured dermapteran populations are, and so local-scale barcode divergence may confound the utility of the method. The number of individuals of each Anisolabididae morphospecies barcoded was largely determined by their individual abundances and their successful amplification. After successful retrieval of barcode sequences for male specimens, sequences for unknown female specimens were obtained. Individual females were selected based on their co-occurrence with males of each morphospecies. Females that fell within the range of genetic distance for a given male morphospecies (assessed visually using a neighbour-joining tree of p-distances generated in MEGA X [65]) were used to define adult female morphology for the morphospecies. All remaining adult females in the sample were then identified
Total genomic DNA extractions were performed using Chelex resin (Bio-Rad, Hercules, CA, USA) [66]. One of the mesothoracic legs was removed from individuals using forceps, taking care not to damage the body in the process and flame-sterilising instruments with 100% ethanol between handling different individuals. Excised legs were placed in 1.7 mL tubes with 200 µL 5% Chelex in solution and two 3 mm diameter glass beads, and then shaken in a TissueLyser II mixer mill (Qiagen, Venlo, The Netherlands) at 25 Herz for two minutes, following which the mixer mill adaptor plates were reversed in orientation and the tubes shaken for another two minutes. Tubes were spun down in a desktop centrifuge briefly and 5 µL of Proteinase-K (Bioline, London, UK) was added directly to the surface of the Chelex. Tubes were incubated in a water bath at 65 °C for two hours, followed by 10 min at 90 °C to deactivate the Proteinase-K. Extractions were stored at −20 °C. Prior to PCR, tubes were spun down at 18,600 rcf (× g) for seven minutes in a D3024 high-speed microcentrifuge (DLAB Scientific, Beijing, China), and aqueous DNA was pipetted from just above the surface of the Chelex.
We first used the “universal” arthropod primer pair LCO1490/HCO2198 [67] and where these failed used the revised degenerate versions jgLCO1490/jgHCO2198 [68]. DNA was amplified using 1 µL of total genomic extractions as templates in a 40 µL reaction with 1× Thermopol PCR buffer (New England Biolabs, Ipswich, MA, USA), 2 mM MgCl2, 200 µM dNTPs, 1 µM of each primer, 0.64 µg bovine serum albumin, and 1.6 U of taq polymerase (New England Biolabs, Ipswich, MA, USA). Initial denaturation took place at 95 °C for four minutes, followed by 40 cycles of 95 °C denaturation for 30 s, 49 °C annealing for 60 s, and 72 °C extension for 90 s, followed by 72 °C for three minutes for the final extension using a Mastercycler EP Gradient S thermocycler (Eppendorf, Hamburg, Germany). Products were run on a 2% agarose gel set with SYBR Safe DNA Gel Stain (ThermoFisher, Waltham, MA, USA) at 100 eV for 40 min, and then visualised with GelDoc XR+ (Bio-Rad, Hercules, CA, USA) using the default setting for SYBR stained DNA. Products were directly sequenced in both directions using the respective primers with an Applied Biosystems 3730 capillary analyser (Macrogen, South Korea). and others: sequence data were generated with Sanger sequencing. Primary sequence data were assembled from forward and reverse strands in Geneious version 9.1.8 (https://www.geneious.com). Sequences were aligned in MEGA X using ClustalW [69] and then translated to confirm sequences did not correspond to pseudogenes [70]. The genetic distance (p-distance) within and between species groups was calculated estimating variance with 1000 bootstraps. The p-distance [71] is the proportion of variable nucleotides between two individuals and diverges from the expected genetic distance with time and should be conservative for barcoding.
To define a barcode gap a priori, we sought data from the Barcode of Life Data Systems (BOLD) public repository [72]. Records for Dermaptera cox1 barcodes were downloaded using the “bold” R package, which downloads complete records for a list of BOLD ID codes. Sequences not identified to species, shorter than 500 bp, and for species represented by fewer than five entries were excluded. Remaining records included Chelidura guentheri Galvagni (Forficulidae), L. riparia, N. lividipes, and both sister species of F. auricularia. Sequences were aligned in MEGA X and the genetic distance (p-distance) within and between species was calculated estimating variance with 1000 bootstraps.

2.3. Phylogeny

The generic classifications after Steinmann [6] were tested by gathering more sequence data. We obtained a 358 bp fragment of cytochrome b (cob), a 442 bp fragment of 28S ribosomal DNA (28S), and a 466 bp fragment of the tubulin alpha 1 gene (tuba1) for selected individuals from the Anisolabididae morphospecies. For each gene fragment, we aimed to obtain at least two individuals for each morphospecies. Cytochrome b was amplified and sequenced under the same reaction conditions and cycling profile as cox1, using the CB3/CB4 primer pair [73]. The 28S fragment was amplified with primers designed using Primer3 [74,75] implemented in Geneious using the default settings. Suitable primer binding sites were identified for a fragment > 400 bp with a multiple sequence alignment of four Anisolabididae 28S sequences from Kamimura [76] in GenBank [77] (accession numbers: AB119545, AB119544, AB119542, AB119549). Two forward (An16F: GAGAAATCCGAATATCTGAA and An17F: AGAAATCCGAATATCTGAAG) and two reverse primers (An481R: AATATAATTGCCAACAATGC and An485R: TGAGAATATAATTGCCAACA) were selected and tested, amplifying a fragment 452–462 bp. PCR was performed using each possible pair, and the combination that produced the strongest bands after staining and electrophoresis was selected for sequencing. 28S was amplified with a cycle of 93 °C denaturation for three minutes, followed by 30 cycles of 93 °C denaturation for 60 s, 55 °C annealing for 90 s, and 72 °C extension for 75 s, and then 72 °C for four minutes for the final extension. For tuba1, the primer pair DDVTubAF/DDVTubAR [78] was used with a cycle of 94 °C denaturation for three minutes, followed by 35 cycles of 94 °C denaturation for 30 s, 50 °C annealing for 30 s, and 72 °C extension for 50 s, followed by 72 °C for six minutes for the final extension. Nuclear genes were amplified, visualised, and sequenced using the same reagent mixtures as mitochondrial ones. Primary sequence data were assembled from forward and reverse strands in Geneious as above. For both 28S and tuba1, ambiguous reads at the ends of the assembly could not be resolved and ends were dropped starting from the first ambiguous read. Sequences were aligned in MEGA X as above, and cob and tuba1 sequences were translated to assure that sequences corresponded to an amino acid sequence without stop codons. In addition to their phylogenetic use, cob sequences were also used analogously to cox1 sequences, estimating the within- and between-species genetic distance for Anisolabididae morphospecies based on the fragment.
Gene trees for each fragment were estimated using the maximum likelihood method in RAxML version 8.2.10 [79] with the standard hill-climbing algorithm, a general time-reversible model of site evolution, and a gamma-distributed rate parameter which was estimated empirically. Mitochondrial fragments (cox1 and cob) were combined into a single mitochondrial data matrix of 1016 bp. Log-likelihoods of estimated trees using rate heterogeneity parameters under gamma and CAT models were compared before selecting the gamma parameter [80]. Node support was estimated with 1000 bootstraps using RAxML’s rapid bootstrapping algorithm. Following this, the sequence alignments were concatenated with SequenceMatrix version 1.8 [81]. A partition homogeneity test (incongruence length difference test) was performed in PAUP* version 4 [82] on the concatenated data to determine whether concatenating the fragments was likely to improve phylogenetic signal. The test failed to reject the null hypothesis of congruence at α = 0.05. The concatenated dataset contained gaps (e.g., 28S could be obtained for one individual and tuba1 for another, but both fragments could not be obtained for both individuals). Individuals for which only one fragment was obtained were removed prior to the final analysis. Thomson and Shaffer [83] noted that when data matrices are sparse the identification and removal of “rogue” taxa can improve tree inference and support values. We used the RogueNaRok web service and its eponymous algorithm [84] to identify rogue taxa, pruning potential rogues based on their effect on the majority-rules-consensus tree, but only if pruning that taxon did not drop the number of taxa in a morphospecies below three. Trees were rooted on their outgroups prior to pruning.
Outgroups for all analyses were retrieved from GenBank. cox1 and tuba1 sequences for L. riparia, Nala tenuicornis (de Bormans) (Labiduridae), and N. lividipes were originally published in Naegle et al. [18]. The 28S sequence for L. riparia was originally published in Kamimura [76]. cox1 and cob sequences for Challia fletcheri Burr (Pygidicranidae) were extracted from a complete sequence of the C. fletcheri mitochondrial genome [85]. The C. fletcheri mitochondrial genome contains the only publicly available Dermaptera cob sequence. While C. fletcheri was used as the outgroup for single-gene cob ML tree, subsequent analyses identified it as a potential rogue taxon, suppressing the inferential power of the concatenated dataset so it was not used as part of the final outgroup. A final tree was estimated from the concatenated pruned alignment in the same manner as above with rate heterogeneity of site evolution estimated independently for 28S, tuba1, and the mitochondrial data with partitions. A subsequent tree was estimated with a constraint tree imposed corresponding to the two putative genera (Anisolabis and Gonolabis). The best constrained and unconstrained trees were compared using the Shimodairo-Hasegawa test [86], which compares the log-likelihoods of an input tree against a candidate tree or set thereof.
We complemented the ML analysis with a Bayesian estimate of the species tree. *BEAST [87] is an extension of BEAST that estimates species trees from multi-locus sequence data by modelling the multispecies coalescent of the loci. The analysis estimates gene trees for all loci but embeds them within a shared species tree. While multiple individuals are required per known taxon to estimate effective population size by coalescent modelling, the individuals sequenced for each locus need not be the same. This is advantageous in the present case as some individuals yielded usable sequence data for some loci but not others. We used *BEAST2 executed within BEAST v2.5 [88] to estimate the species tree of the seven Anisolabididae morphospecies.
As only topology was of interest, we implemented a strict molecular clock. Substitution models were estimated using bModelTest version 1.1.2 [89], only considering models that distinguish transitions from transversions to reduce computational load. bModelTest allows the estimation of substitution models simultaneous to tree estimation, and performs model averaging automatically. For the multi species coalescent, we used a linear model with a constant root as the population size function. *BEAST only allows population size to take a gamma prior but allows the estimation of the scale parameter of this gamma prior as a hyperprior [90], which we did. Ploidies were set to diploid autosomal nuclear for 28S and tuba1 and mitochondrial for the combined cox1 and cob sequence. We used a conditioned reconstructed process (a birth-death process) as the species tree prior [91], with birth and death rates taking conservative exponential priors with means of two and one, respectively. Other priors, such as those relating to the molecular clock rate and the prior probabilities of substitution models considered by bModelTest, were left at their default. We used BEAUTi version 2.5.1 [92] to generate the .xml file for BEAST. The analysis was run on two independent chains of 5 × 107 generations, sampling every 104 generations. Log and tree files were combined using LogCombiner version 2.5.1 [88], discarding 10% of the states as burn-in. We used Tracer version 1.7.1 [93] to inspect Markov chain traces and determine whether posterior distributions had been adequately explored. The estimated species tree and gene trees were sampled from combined *BEAST output files using TreeAnnotator version 2.5.1 [88] to generate maximum clade credibility trees.
*BEAST requires sequences to be assigned to taxa prior to analysis, and so gene tree priors assign all individuals of the same taxa to a monophyletic group. To compare the topologies of the gene trees estimated with *BEAST to those estimated using RAxML, the RAxML analyses were re-run with the search space constrained to include only trees where the known morphospecies are monophyletic. This is a crude approximation of the process of assigning a prior on tree topology. The unconstrained and constrained RAxML and *BEAST gene trees were plotted in parallel for comparison.
All sequence data were submitted to GenBank under accession numbers MK399433 to MK399688.
All visualisation and data preparation not explicitly mentioned was performed in R 3.5.0 [94] using RStudio version 1.1.453 [95]. We used the ggtree R package [96] for all tree figures.

3. Results

3.1. Sampling, Identification, and Morphology

A total of 136 unknown males were resolved into seven Anisolabididae morphospecies based on combinations of the shapes of the male forceps and parameres (Figure 1a–n). Anisolabididae were found only in SA and WA. The morphospecies could be sorted to two genera, Anisolabis Fieber and Gonolabis Burr, based on the shape of the parameres, which were either much longer than wide or truncate respectively (Figure 1). Individually, forceps shape was similar for some species (cf. G. forcipata, G. sp. 2, and G. sp. 3; Figure 1e,f,k–n) but the combinations of characters reliably distinguished morphospecies. Most morphospecies could not be identified to species using Steinmann [6], except G. forcipata and G. nr. gilesi. Some morphospecies are easily recognisable by forceps alone. Anisolabis sp. 1 is the only morphospecies with a distinct lateral tooth on the forceps (Figure 1a), and G. nr. gilesi the only one with a dorsoventral tooth (Figure 1g). Anisolabis sp. 2 and G. sp. 1 have broadly similar forceps shapes (Figure 1c,i), with the former distinguished by the parallel region towards the base of the forceps. Summary statistics for morphometric variables (derived variables and original measurements) are provided in the Supplementary Material (Table S2).
Principal component analysis (PCA) reduced variation across the four morphometric variables to three principal components (PCs) that cumulatively explained 94.5% of the total variance (41.7%, 27.6% and 25.2% respectively) (Table 1) among individuals. The first PC is dominated by the forceps asymmetry and the paramere ratio although the other two variables show relatively high loadings, and the second PC by the basal width of the forceps and the paramere ratio (Table 1). A biplot of the first two PCs revealed that the two putative Anisolabis spp. are easily separable from the putative Gonolabis spp. by morphometrics, although G. nr. gilesi shows some overlap with Anisolabis sp. 1 (but is otherwise distinguishable). Anisolabis sp. 2 is clearly distinguished from all other morphospecies. The Gonolabis spp. show much overlap. Gonolabis sp. 3, of which only 3 males were present in the sample, showed greater variation between individuals than other Gonolabis morphospecies, and is not easily distinguishable by these morphometrics, showing overlap with G. sp. 2 and G. forcipata (Figure 2).
Discriminant function analysis reliably distinguished the two putative genera and the two Anisolabis species with 100% accuracy, but accuracy was only 71.28% (95% CI: 61.02–80.14%) for the Gonolabis spp., which increased to 75.82% (65.72–84.19%) when G. sp. 3 was excluded. Gonolabis nr. gilesi was classified with the least accuracy, in 57.14% of cases. The analysis classified G. forcipata with 73.913% accuracy and G. sp. 1 with 90.625% accuracy, invariant to the inclusion of G. sp. 3, while the classification of G. sp. 2 improved from 59.091 to 68.182% when G. sp. 3 was excluded. Gonolabis sp. 3 was not correctly classified in any case when it was included. The most informative variables of the discriminant functions varied by the classification being performed. To distinguish genus, the forceps asymmetry and paramere ratio were the most informative; for distinguishing the Anisolabis, the forceps ratio was the most informative; and for the Gonolabis classification, the most informative variable was the paramere ratio (Table S3). However, the data did not satisfy multivariate normality (Royston’s test of multivariate normality; H = 147.286, p < 0.001), even when split by genus (Anisolabis, H = 14.005, p = 0.001; Gonolabis, H = 62.871, p < 0.001).
Barcode sequences indicated that five of the seven male morphospecies had female representatives in the sample, and these were used to define female morphology for A. sp. 1, A. sp. 2, G. forcipata, G. nr. gilesi, and G. sp. 1. Female A. sp. 1 are easily recognisable because of their broad morphological similarity to the males; they are similarly patterned and coloured, and their forceps also bear the same median lateral tooth (cf. Figure 1a), although, as is the case for all females, their forceps were otherwise straight and not rounded like their male counterparts. Of the two WA morphospecies, female G. sp. 1 may be distinguished from those of A. sp. 2 by the darker sternites, and the colour pattern of the femur. Anisolabis sp. 2 femurs are proximally darker (towards the trochanter) and distally lighter (towards the tibia), and G. sp. 1 femurs are either the inverse or uniformly coloured. The ultimate sternites of the two are both setose, although the setae of G. sp. 1 are much longer and more prominent. Of the SA morphospecies, G. nr. gilesi may be distinguished from G. forcipata by a small dorsoventral tooth in the same position as that of the males (c.f. Figure 1g). The remaining females were counted, making the final count of adult Anisolabididae 206. A key to distinguish both males and females of the morphospecies examined in this study is provided in Appendix A. Most morphospecies were found at relatively restricted times of the year. Anisolabis sp. 2, G. forcipata, G. sp. 1, and G. sp. 2, and G. sp. 3 were all only found in winter. Anisolabis sp. 1 and G. nr. gilesi were found throughout the year. Some morphospecies were more common in particular years. Ninety percent of G. forcipata specimens were taken from 2016 collections. All but one of the G. sp. 2 specimens were found in 2016, as were all of the G. sp. 3 specimens. Additionally, some morphospecies were found only at a restricted set of sites. Anisolabis sp. 2, G. forcipata, G. nr. gilesi, and G. sp. 1 were found primarily at the more regularly sampled sites (#2, #3, #19, #20) (Figure S1 and Table S1). In these cases, the morphospecies were only found at the time of year when the full set of sites was sampled, so their abundance would not have been inflated by year-round sampling. The exception is A. sp. 1, which appeared in the sampling throughout the year.
Morphospecies occurrences were mapped (Figure 3). The Anisolabididae fauna of WA and SA showed little overlap. Anisolabis sp. 2 and G. sp. 1 were only found in WA, and G. forcipata, G. nr. gilesi, G. sp. 2 and G. sp. 3 only in SA. Anisolabis sp. 1 was the only species common to both (Figure 3). In SA, G. forcipata and G. nr. gilesi were only found east of Adelaide; G. forcipata was found north of Lake Alexandria and G. nr. gilesi to the south, and together at only one site (Figure 3). The remaining SA species were only found to the west of Adelaide (Figure 3). Gonolabis sp. 2 and G. sp. 3, which show morphological similarity (Figure 1), were found together at two localities (Figure 3). In WA, G. sp. 1 and A. sp. 1 were the sole morphospecies at two sites respectively, and G. sp. 1 and A. sp. 2 were the most abundant at the remaining two sites (Figure 3).

3.2. Barcoding

Forficula auricularia was the most common species found in the BOLD public repository, the sister species (A and B) totalling 688 records. The next most abundant species (C. guentheri and L. riparia) totalled six each. Forficula auricularia A had more than four times as many records as B (Table S4). Intraspecific comparisons all showed <0.01 mean p-distance with similarly low variance and all interspecific comparisons showed >0.1 mean p-distance (Table S4). The lowest pairwise group mean p-distances were 0.102 between the two F. auricularia species, and 0.147 between L. riparia and N. lividipes, which are in the same family.
The number of sequences obtained from field samples varied, although the full 658 bp barcode fragment was acquired for all included individuals (Table 2). Intraspecific genetic distance was <0.01 for most morphospecies, and was 0.017, 0.040, and 0.013 for G. forcipata, G. sp. 2, and G. sp. 3, respectively (Table 2). Interspecific genetic distances were all >0.1, with the lowest values found among the Anisolabididae (Table 2). The barcode sequences obtained corroborated the morphospecies defined after Steinmann (1989b); all within and between-species comparisons were consistent with a barcode gap. Genetic distances at the cob locus were similar; intraspecific genetic distances were all <0.020 except for G. sp. 1 which showed 0.054 (Table 3), although this was well outside the range of interspecific distances which were all greater than 0.180, except for the pairwise comparison of G. nr. gilesi and G. sp. 1, which had a p-distance of 0.106 between them (Table 3). A BLASTn search of all L. truncata barcode sequences showed pairwise similarities of 77.26–83.09% to L. riparia cox1 sequences (accession numbers: AB435163, AY555549, JN241998).

3.3. Phylogeny

The number of sequences obtained varied by morphospecies and gene; at least two morphospecies were covered for each gene except for tuba1. Only one tuba1 sequence was obtained from G. nr. gilesi and G. sp. 2. The final concatenated dataset, pruned of potential rogue taxa, comprised 39 individuals across the seven morphospecies and four outgroup taxa in the Labiduridae and Pygidicranidae families (Table 4). The concatenated ML gene tree resolved all Anisolabididae morphospecies to clades with 100% bootstrap support, and so the tree is presented with morphospecies-internal branches reduced for clarity, opposite the *BEAST species tree (Figure 4). The one exception is G. sp. 3 which, although reliably split from G. sp. 2, has low bootstrap support for the node splitting the two individuals. Branch lengths are not shown to emphasise topology. Outgroups have been pruned in the final figures. The ML and Bayesian estimates are mostly identical; A. sp. 1 is sister to all other taxa, followed by G. nr. gilesi (Figure 4). In both trees, G. forcipata, G. sp. 2, and G. sp. 3 form a clade with high support (Figure 4) (referred to henceforth as the SA clade). The *BEAST tree resolves G. sp. 1 and A. sp. 2 to a highly supported clade, sister to the SA clade (Figure 4). The ML tree places G. sp. 1 and sister to the SA clade and A. sp. 2, and A. sp. 2 as sister to the SA clade, but with low bootstrap support (Figure 4). While not annotated on the tree, the branches preceding the nodes with the lowest bootstrap support are also some of the shortest in the tree, both at 0.028.
Regardless, the generic assignments following Steinmann [6] are paraphyletic and polyphyletic for Gonolabis and Anisolabis respectively according to the molecular phylogeny. The log-likelihoods of the best-known ML trees unconstrained and constrained by the monophylies of Gonolabis and Anisolabis were −8205.895 and −8216.307, respectively. The Shimodairo-Hasegawa test did not indicate that the constrained tree was significantly worse (p > 0.05), although plotting it did reveal that the constraint caused many of the branches to reduce to almost zero. This would raise the constrained tree’s log-likelihood considerably [71], so the result of this test may be unreliable. Gonolabis forcipata, G. sp. 2 and G. sp. 3 form a highly supported clade (Figure 4) and they also show considerable morphometric overlap (Figure 2). All other individual morphospecies form their own clades. Each of the clades proposed by *BEAST is distinguished by distinct forceps morphology (c.f. Figure 1 and Figure 4). Moreover, there appear to be two state-specific clades, the SA clade and that formed by G. sp. 1 and A. sp. 2 (c.f. Figure 3 and Figure 4) (referred to henceforth as the WA clade).
Gene trees were less straightforward, although those estimated by *BEAST showed generally higher node support than the ML trees, both unconstrained and constrained by the monophyly of the morphospecies. Across all gene trees, A. sp. 1 was sister to all other taxa (Figures S2–S4). The SA and WA clades are also mostly present, although the former across more of the gene trees but it should be noted that the nuclear ML gene trees do not consistently indicate divergence of G. sp. 2 and G. sp. 3 (Figures S2–S4). *BEAST estimated highly supported topologies identical to the species tree for the tuba1 and the combined mitochondrial datasets (c.f. Figure 4, Figure S2c and S4c. The *BEAST 28S tree was similar to the concatenated ML tree, with the places of G. sp. 1 and A. sp. 2 swapped (c.f. Figure 4 and Figure S3c).

4. Discussion

This study assessed the current state of taxonomic knowledge available to enumerate the diversity of dermapteran fauna in the southern Australian grain growing regions and is the first to apply molecular methods to study Australian native Dermaptera. Anisolabididae were classified based on combinations of male primary and secondary sexual characters. These reliably sorted males into morphospecies, all of which showed consistently lower genetic distance within than among putative taxa at the cox1 barcode locus as well as a fragment of cob, reflecting a clear barcode gap. The use of barcodes therefore shows promise for the study of Australian Dermaptera. Importantly, this allowed females of the morphospecies to be identified, which permitted a more complete assessment of morphology and allowed all samples to be resolved. Female genitalia, the spermatheca and the ovipositor, have been recognised as potentially important taxonomic characters [97,98], and so future studies should incorporate these characters into their morphological assessment, as they will likely provide more clarity to the problem of female identification. Another important caveat is the lack of female specimens for G. sp. 2 and G. sp. 3. Given the morphological similarity within the SA (G. forcipata, G. sp. 2, G. sp. 3) clade, females of G. forcipata could be mistaken for females of these two unknown species, over-inflating estimates of the distribution and abundance of G. forcipata. This is possible, but unlikely, as G. forcipata was not found at any of the sites where male G. sp. 2 and G. sp. 3 were collected. Moreover, juvenile morphology remains opaque, although cost-effective adult-larval matching solutions for large numbers of samples are available [99], which could take advantage of the sequence data reported herein. Given that these morphospecies were found at the sites with less-frequent sampling, it is likely that the scarcity of these morphospecies in the sample is an effect of sampling bias.

4.1. The Utility of Barcoding for Earwigs

Barcoding in the strict sense (matching barcode sequences of unknown specimens to those of known specimens) is of little use at present for Dermaptera in Australia and worldwide. Two species (F. auricularia B and N. lividipes) in the sample explored in this study were represented on the BOLD public repository and these were both readily identifiable by morphology in any case. In the absence of a previously sampled conspecific, an unknown specimen may be assigned correctly to genus, tribe, or family if the higher taxon is sufficiently sampled [100] but public BOLD records include only 16 individuals from the Anisolabididae family, the majority being either A. maritima or unidentified specimens from the Anisolabis and Euborellia Burr genera. GenBank is equally depauperate, although it does contain 24 cox1 sequences for Anisolabis littorea (Whiting) from Goldberg and Trewick [101]. A BOLD identification search of a 658 bp L. truncata barcode sequence returned no hits, despite six known congeneric records (L. riparia). This echoes the findings of Kwong et al. [102] and Kvist [103]; barcode reference databases show taxonomic skew at several scales, uneven coverage, and many unidentified specimens for which no additional data (e.g., photos, voucher information) are provided. A GenBank BLASTn search returned L. riparia and Labidura japonica (Haan) as close matches, although members of other orders showed equal or higher sequence similarity as well. The sequence reported herein appear to be the first L. truncata barcode sequences made publicly available. Pairwise distances to GenBank accessions support the distinction of L. truncata as a separate species to L. riparia [34].
Most of the species-identified Dermaptera records available via BOLD list either in-house identification methods (i.e., BOLD’s Barcode Index Number system or tree-based methods) and the majority that report morphological identification use only digitised photos submitted to BOLD, not type material. The taxonomic literature consulted for species diagnoses in BOLD records is also not given. For the current set of earwig records, this is not necessarily problematic; the majority of records represent the well-sampled F. auricularia species complex. However, for uncharacterised species such as those considered here, it is important to report how a specimen was identified, provide citations of the authoritative texts and keys and, where possible, original descriptions [104]. This is especially relevant for taxa with significant taxonomic impediment such as the Dermaptera where the currently accepted Latin binomial and familial placement may require considerable command of a literature that is difficult to access, sparse, and occasionally self-contradictory (see [9]).
Morphological assessments were equally challenging. Most specimens could not be identified to a known species using Steinmann [6], suggesting that they are undescribed, or the available information is of insufficient detail. Gonolabis forcipata was the only species that could be confidently identified, but type information only lists south-western WA whereas the specimens in the present study are from SA. All type specimens for described species are in Europe (see [9]), so it is difficult to determine whether SA represents a new location for this species.

4.2. Distribution of Anisolabididae

The complete distribution of the Anisolabididae remains unclear at present, although some inferences can be made. Aside from A. sp. 1, no morphospecies were shared between WA and SA, and SA shows a distinct fauna east and west of Adelaide. These patterns need to be confirmed with more sampling, particularly given that this study’s scope was limited (by design) to grain growing regions. Extended sampling is needed to better capture the landscape diversity of southern WA and SA, especially along the coast of the Great Australian Bight. Given that agricultural transformations have negative impacts on species richness in general [105,106] and that the intensity of cultivation has a negative effect on arthropod species richness specifically [107,108,109], extending sampling to a broader range of habitats outside agricultural landscapes is likely to further increase the known diversity of Australian Anisolabididae. The Bayesian species tree estimate divides five of the seven Anisolabididae morphospecies into two state-restricted clades, a WA clade and an SA clade. Australian insect fauna often shows such short-range endemism, particularly in taxa with poor dispersal ability [110]. Anisolabididae are likely to be poor dispersers (as are most of the order Dermaptera) because of their small size, litter-dwelling habit, and wingless habitus, although there are the notable cosmopolitan exceptions A. maritima and Euborellia annulipes (Lucas). It is curious that E. annulipes was absent from the sample. It was most recently reported as being a greenhouse pest [23]; highly seasonal, broadacre crop environments may not provide suitable habitat for this species or perhaps it will appear with additional sampling.
The seasonal distribution of the morphospecies is relevant to their potential for pest control. Most morphospecies were found as adults only in the winter, when grain crops in southern Australia are grown [111]; in other seasons, assemblages of earwigs that act as natural enemies may recede into surrounding vegetation. Enumeration of the roles of the morphospecies within the agroecosystem and their fine-scale distribution in the landscape may contribute to integrated control of pests of Australian grains [112].

4.3. Conflict between Morphological and Molecular Inferences

Neither maximum-likelihood nor Bayesian multilocus phylogenetic approaches supported the two putative genera based on paramere morphology. However, there appear to be state specific clades distinguished by forceps morphology. All clades have unique male forceps morphology, highlighting the trait’s utility in distinguishing morphospecies, but in some cases paramere morphology is necessary to distinguish species. At broader scales, across clades, sole reliance on paramere morphology might lead to misleading species assignment. Some of the G. sp. 1 and G. sp. 2 specimens showed similar paramere morphology despite being phylogenetically distant. Moreover, the lengths of the parameres of A. sp. 1 and A. sp. 2 are closer to each other than to other morphospecies, but the two species are not closely related according to the molecular phylogeny. This echoes the argument made by Kamimura et al. [113] working with another family, the Pygidicranidae; even among closely related congeners, genital characters may mislead.
The generic assignments here are not all necessarily valid. Srivastava [60] revised the systematics of the Anisolabididae genera and generic assignments based on this system would yield the following changes; A sp. 1 would become Gonolabis sp.; Anisolabis sp. 2 would become Apolabis sp.; G. forcipata remains unknown, keying to either Mongolabis or Anisolabella, but lacking the snout-like paramere structure of Mongolabis nor the continuous outer paramere margin of Anisolabella; G nr. gilesi would become Anisolabella sp. 1; G. sp. 1 would become Mongolabis sp.; G. sp. 2 would remain unknown for similar reasons to G. forcipata; and G. sp. 3 would become Anisolabella sp. 2. In such a case, the Anisolabella become polyphyletic, and the conjecture that similar paramere structure does not reflect phylogeny remains, regardless of the nomenclature used. This is unsurprising given Srivastava’s heavy reliance on paramere morphology for distinguishing the genera of the Anisolabidinae subfamily [60]. Given these issues, the specimens presented here should be incorporated, along with their putative identifications, into a fuller cladistic and phylogenetic analysis.
The phylogenetic signal of insect genitalia has been subject to some debate. Polyandry has been found in confamilial species Euborellia plebeja (Dohrn) [114,115,116,117] and Euborellia brunneri (Dohrn) [118], so it is likely that genital morphology is subject to sexual selection. However, the precise function of the parameres is unknown [41] so it is difficult to make definitive statements about the effect of sexual selection on their morphology. Structures of the male forceps often play specific roles in male-male competition [38] so they should also be under strong sexual selection for morphological evolution. Eberhard [119] and Arnqvist and Rowe [120] both cited Losos [121] in arguing that rates of morphological evolution (which may be accelerated by sexual selection) in insect male genitalia relative to the rate of speciation should be high enough to swamp phylogenetic inertia and that there should therefore be little correlation between morphological similarity in male genitalia and phylogenetic distance. The present study is equivocal on the matter, as the SA clade species show similar paramere morphology, while the WA clade do not. Song and Bucheli [122] explicitly tested the phylogenetic signal of male insect genitalia and found that the genitalia are composite structures, and some sub-components may be conserved whereas others may be free to diversify. In the present study, the parameres were used for generic identification, but other characters such as the length and asymmetry of the virgae and the length of the penis lobes may also prove useful in describing the phylogeny of the morphospecies as they have already in describing the family-level phylogeny of the order [41]. A full cladistic analysis of the composite structure of Dermaptera genitalia may shed new light on the heretofore rather unstable taxonomy.

5. Conclusions

This study presents, to our knowledge, the most detailed study of Australian Anisolabididae to date. We combined extant taxonomic knowledge, the fidelity of which is unknown, with linear morphometrics, simple molecular analyses of DNA barcodes, and more detailed phylogenetic analyses. Our findings demonstrate that the current state of knowledge of Australian Anisolabididae is sufficient to distinguish male morphospecies from each other, but accurate species and generic assignment is problematic. We provide a foundation for future dermapteran biodiversity research and taxonomic revision of a morphologically challenging family. A future study that provides comprehensive geographic and habitat coverage of the sampled regions, particularly the south-eastern coast of WA, the regions surrounding the Spencer Gulf in SA, and the coast of the Great Australian Bight, would likely uncover considerable dermapteran diversity. The current research also raises the possibility of region-specific species of beneficial earwigs providing fortuitous pest control in grain systems and highlights the importance of detailed studies to fully enumerate local insect biodiversity.

Supplementary Materials

The following are available online at https://www.mdpi.com/2075-4450/10/3/72/s1: Figure S1: Map of field sites from which adult Dermaptera were collected. Numbers refer to sites listed in Table S1. Axes represent longitude and latitude. Figure S2: Gene trees inferred from alignment of mitochondrial sequence data (1016 bp) for Anisolabididae morphospecies (658 bp from cytochrome c oxidase subunit 1 and 358 bp from cytochrome b). Node labels represent bootstrap support from 1000 bootstraps (a,b) and posterior probability (c). (a) Best tree inferred under a maximum likelihood framework in RAxML using a general time reversible model of sequence evolution with a gamma-distributed rate parameter for site evolution estimated empirically; log-likelihood = −5689.987. (b) Tree inferred exactly as for (a) with a constraint tree representing the known morphospecies imposed on the search space; log-likelihood = −5689.989. (c) Maximum clade credibility tree inferred using *BEAST, with models of site evolution estimated simultaneously to tree estimation using bModelTest and a birth-death process for the tree prior; 95% HPDI of tree log-likelihood = [−5276.756, −5254.856], mean log-likelihood = −5265.388. Figure S3: Gene trees inferred from alignment of a fragment of 28S ribosomal DNA (442 bp) from Anisolabididae morphospecies. Node labels represent bootstrap support from 1000 bootstraps (a and b) and posterior probability (c). (a) Best tree inferred under a maximum likelihood framework in RAxML using a general time reversible model of sequence evolution with a gamma-distributed rate parameter for site evolution estimated empirically; log-likelihood = −1087.959. (b) Tree inferred exactly as for (a) with a constraint tree representing the known morphospecies imposed on the search space; log-likelihood = −1087.959. (c) Maximum clade credibility tree inferred using *BEAST, with models of site evolution estimated simultaneously to tree estimation using bModelTest and a birth-death process for the tree prior; 95% HPDI of tree log-likelihood = [−1123.086, −1102.800], mean log-likelihood = −1114.919. Figure S4: Gene trees inferred from alignment of a fragment of tubulin-alpha 1 (466 bp) from Anisolabididae morphospecies. Node labels represent bootstrap support from 1000 bootstraps (a and b) and posterior probability (c). (a) Best tree inferred under a maximum likelihood framework in RAxML using a general time reversible model of sequence evolution with a gamma-distributed rate parameter for site evolution estimated empirically; log-likelihood = −1183.262. (b) Tree inferred exactly as for (a) with a constraint tree representing the known morphospecies imposed on the search space; log-likelihood = −1184.068. (c) Maximum clade credibility tree inferred using *BEAST, with models of site evolution estimated simultaneously to tree estimation using bModelTest and a birth-death process for the tree prior; 95% HPDI of tree log-likelihood = [−1086.380, −1054.702], mean log-likelihood = −1066.792. Table S1: Location of field sites from which adult Dermaptera were collected. Numbers refer to labels on Figure S1. Table S2: Summary statistics for morphometric variables for the Anisolabididae morphospecies. “Forceps asymmetry” is an index calculated as the sum of the absolute differences between the heights and widths of a specimen’s two forceps, “Paramere ratio” is the ratio of a specimen’s right paramere’s length to its width, and “Forceps ratio” is the ratio of the maximum forceps length to the maximum forceps width. These three measurements were dimensionless; all others were in mm. Individual cells show the mean, the standard deviation in brackets, and the minimum and maximum values below them. N refers to the number of individuals of each morphospecies measured. Note that only the three dimensionless variables plus the basal width of the forceps were used for the morphometric and classification analysis. Table S3: Details of linear discriminant function analysis. “Classification” refers to the grouping variable used (i.e., “Genus” refers to the discrimination of the two genera, “Anisolabis” to that between Anisolabis spp., etc.). Function refers to the individual discriminant functions generated, of which there can be a maximum of k − 1, where k is the number of levels of the grouping variable (morphospecies or genera in this case). Functions are numbered in order of the proportion of variance explained by each, which is shown in brackets. “Forceps asymmetry” is an index calculated as the sum of the absolute differences between the heights and widths of a specimen’s two forceps, “Paramere ratio” is the ratio of a specimen’s right paramere’s length to its width, and “Forceps ratio” is the ratio of the maximum forceps length to the maximum forceps width. These three measurements were dimensionless; the basal width of the forceps was in mm. Table S4: Uncorrected p-distances within and between earwig species on the Barcode of Life Data Systems public repository’s cytochrome oxidase c subunit 1 barcodes (507–680 bp). Only records with species names attached and with sequences > 500 bp were retrieved. Interspecific means and variances are shown on the left and right of the diagonal. Intraspecific mean shown on diagonal with variance in brackets. Variances were calculated using 1000 bootstraps. N refers to total individuals retrieved. Forficula auricularia A and B refers to cryptic sibling species [58].

Author Contributions

Conceptualization, O.P.S., M.B., P.A.U. and A.A.H.; methodology, O.P.S., M.B., P.A.U., J.H., D.S., M.N., T.H., M.v.H. and A.A.H.; formal analysis, O.P.S.; investigation, O.P.S., M.B., P.A.U., J.H., D.S., M.N., T.H., M.v.H. and A.A.H.; resources, P.A.U., J.H., D.S., M.N., T.H., M.v.H. and A.A.H.; data curation, O.P.S.; writing—original draft preparation, O.P.S.; writing—review and editing, O.P.S., M.B., P.A.U., J.H., D.S., M.N. and A.A.H.; visualization, O.P.S.; supervision, M.B., P.A.U. and A.A.H.; project administration, P.A.U., J.H., D.S., M.N., T.H., M.v.H. and A.A.H.; funding acquisition, P.A.U., J.H., D.S., M.N., T.H., M.V.H. and A.A.H.

Funding

This research was funded by the Grains Research and Development Corporation, grant number CSE00059. The APC was funded by the Pest and Environmental Adaptation Research Group.

Acknowledgments

Gratitude is extended to the property owners who granted permission to collect invertebrate specimens. We acknowledge Gerry Cassis for his assistance with identifying morphospecies and navigating the literature. Vanessa White and Melissa Carew are thanked for their assistance in developing molecular protocols. Three anonymous reviewers also provided comments and suggestions which considerably improved the quality of the manuscript.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

Appendix A. Key to the Anisolabididae Morphospecies of the Southern Australian Grain Belt

1 
Forceps rounded, teeth may be present, lifting of penultimate ventral sternite reveals parameres lying within the body cavity, although they may be anteriorly recessed………………………………………………………………………………………………………………………………………..…....…..3
2 
Forceps straight, short, no true teeth but the medial surface may be slightly ridged, no parameres present……………………………………………………………………………………………………………………………………………………………….....15
MALES
3 
Patterned/banded on dorsal surface, mixture of red, yellow, brown; medial forceps tooth on inner margins of both forceps near base…………………………………………………………………………………………………………………………….………………....…Anisolabis sp. 1
4 
No patterning, uniform colour or otherwise continuous gradient from light brown to dark brown/black, forceps teeth may be present, if so are dorsoventrally oriented and protruding from the dorsal surface near the base………………………………………..……………………………………5
5 
From South Australia; body length including forceps generally lesser than 15 mm; forceps roughly as wide as long………………………………………………………………………………………………………………………..…………………………………......……7
6 
From Western Australia; body length including forceps generally greater than 15 mm; forceps longer than wide…………………………………………………………………………………………………………………...…………….……………….……………....13
7 
Forceps roughly as wide as long and curving upward, large dorsoventrally oriented teeth on dorsal surface near the base of the forceps, parameres roughly twice as long as wide…………………………………...……………....…………………………………………….Gonolabis nr. gilesi
8 
Forceps roughly as wide as long and not curving upward, no teeth, parameres roughly 1.5 times as long as wide………………………………………………………………………………………………...…………………………………………………………….…..9
9 
Apical angle of paramere sharp and clearly acute……………………………………………………………………………………….Gonolabis forcipata
10 
Apical angle of paramere rounded or with a slight bump which protrudes from the external margin.……………………………………………………………………………………………………..………………………………………………………11
11 
Angle of external paramere margin more or less straight but with concavity along the anterior edge of the angle……………………………………………………………………………………………………………………………………....……….Gonolabis sp. 2
12 
Angle of external paramere margin rounded, external apical margin with obtuse-angled bump which is proceeds straight down on the internal apical margin………….…………………………………………………………………………………………………………………………..Gonolabis sp. 3
13 
Lateral internal edges of forceps with an almost right-angled corner near the anterior end with a roughly parallel region, thoracic sternites as dark as dorsal surface in places; femur uniformly brown or with a proximal light patch, parameres much longer than wide with no curvature on outer edges and acuminate tip……………………………………………………………………………………………………………...Anisolabis sp. 2
14 
No parallel region near the base of the forceps, lateral internal edge smoothly curved (with small ridges), viewed from the side a triangular ridge is apparent near the posterior end of the forceps but this is not a pronounced tooth, parameres as long as wide and slightly pinched toward the tip forming a kind of snout……………………………………………………………………………..………..………………..Gonolabis sp. 1
FEMALES
15 
Patterned/banded on dorsal surface, especially the head; mixture of red, yellow, brown, red; lateral forceps tooth on inner margin near base…………………………………………………………………………………………………………………………………....…………...Anisolabis sp. 1
16 
No patterning; uniform colour or otherwise gradient from light to dark; small bumps on internal margins of forceps but no true teeth……………………………………………………………………………………………………………………………………………………..…………17
17 
From South Australia; body length including forceps generally lesser than 15 mm………………………………………………………………….....19
18 
From Western Australia; body length including forceps generally greater than 15 mm………………………………………………………….….....21
19 
Small dorsal bump near attachment of forceps, not a true tooth but distinct……………………………………………………….Gonolabis nr. gilesi
20 
No dorsal bump near attachment of forceps, not to be confused with the lateral ridge where the forceps slide under the ultimate tergite at the attachment site……………………………………………………………………………………………………………………………..Gonolabis forcipata
21 
Forceps clearly curved upwards near tip; setae on final sternite very long; small projections on posterior edge of final dorsal tergite that align with forceps attachments creating straight edge between forceps attachment; thoracic sternites as dark as dorsal surface in places; femur uniformly brown or with a proximal light patch………………………………………………………………………..……….…………...Gonolabis sp. 1
22 
Forceps more or less straight towards tip; final sternite glabrous or covered in moderate length setae; pronounced projections on posterior edge of final dorsal tergite that align with forceps creating concave edge between forceps attachment; thoracic sternites lighter than dorsal surface; femur as dark as dorsal surface near trochanter and lighter towards tibia………………………………………………….....Anisolabis sp. 2

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Figure 1. (an): Photos of male Anisolabididae forceps and parameres. (a,b): Anisolabis sp. 1. (c,d): Anisolabis sp. 2. (e,f): Gonolabis forcipata Burr. (g,h): Gonolabis nr. gilesi Steinmann. (i,j): Gonolabis sp. 1. (k,l): Gonolabis sp. 2. (m,n): Gonolabis sp. 3. (os): Diagrams of morphometric measurements taken. (o): Forceps length. (p): forceps width. (q): basal width of forceps. (r): paramere length. (s): paramere width. All scale bars indicate 1 mm. Red arrows indicate location of dorsoventrally oriented teeth on forceps of male G. nr. gilesi.
Figure 1. (an): Photos of male Anisolabididae forceps and parameres. (a,b): Anisolabis sp. 1. (c,d): Anisolabis sp. 2. (e,f): Gonolabis forcipata Burr. (g,h): Gonolabis nr. gilesi Steinmann. (i,j): Gonolabis sp. 1. (k,l): Gonolabis sp. 2. (m,n): Gonolabis sp. 3. (os): Diagrams of morphometric measurements taken. (o): Forceps length. (p): forceps width. (q): basal width of forceps. (r): paramere length. (s): paramere width. All scale bars indicate 1 mm. Red arrows indicate location of dorsoventrally oriented teeth on forceps of male G. nr. gilesi.
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Figure 2. Biplot of principal component analysis measuring variation among male Anisolabididae specimens for seven morphometric variables related to primary and secondary male sex characteristics. Ellipses represent 68% normally distributed confidence intervals for the principal components plotted to aid visualisation of clusters. Vectors with arrows represent loadings of the variables on the principal components. Their direction relative to the x- and y-axes and each other represents their correlations with each principal component and each other. Orthogonal vectors are not correlated and vectors in opposing directions are negatively correlated. The length of the vectors in relation to the correlation circle is a relative indicator of the quality of each variable’s representation in the biplot.
Figure 2. Biplot of principal component analysis measuring variation among male Anisolabididae specimens for seven morphometric variables related to primary and secondary male sex characteristics. Ellipses represent 68% normally distributed confidence intervals for the principal components plotted to aid visualisation of clusters. Vectors with arrows represent loadings of the variables on the principal components. Their direction relative to the x- and y-axes and each other represents their correlations with each principal component and each other. Orthogonal vectors are not correlated and vectors in opposing directions are negatively correlated. The length of the vectors in relation to the correlation circle is a relative indicator of the quality of each variable’s representation in the biplot.
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Figure 3. Map of Australia showing locations of collection of Anisolabididae specimens, with pie charts indicating the proportion of each morphospecies found at each site. Some pies have been nudged slightly from their original position to prevent overlapping. Left-inset: Western Australia (WA) sites. Right-inset: South Australia (SA) sites. (a) Great Australian Bight. (b) Spencer Gulf. (c) Adelaide. (d) Lake Alexandria.
Figure 3. Map of Australia showing locations of collection of Anisolabididae specimens, with pie charts indicating the proportion of each morphospecies found at each site. Some pies have been nudged slightly from their original position to prevent overlapping. Left-inset: Western Australia (WA) sites. Right-inset: South Australia (SA) sites. (a) Great Australian Bight. (b) Spencer Gulf. (c) Adelaide. (d) Lake Alexandria.
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Figure 4. Results of Bayesian and maximum-likelihood phylogenetic analysis estimating the species tree of the Anisolabididae morphospecies. Labels under species names represent the number of individuals of that morphospecies from which sequences of a combined mitochondrial fragment of cytochrome c oxidase subunit 1 (658 bp) and cytochrome b (358 bp) (1016 bp), a fragment of 28s ribosomal DNA (28S) (442 bp), and the tubulin alpha-1 gene (tuba1) (468 bp) were obtained. Trees were rooted using members of the Labiduridae family, but these were pruned for visualisation. Left: Maximum clade credibility species tree of Anisolabididae morphospecies estimated using *BEAST, a Bayesian reconstruction of the multi-species coalescent of the individual genes. Node labels indicate posterior probability. 95% HPDI of tree likelihood = [−7949.638, −7421.390], mean tree likelihood = −7446.813. Right: Maximum likelihood tree for a concatenated dataset of fragments of the mitochondrial (cox1 + cob), 28S, and tuba1 sequence data inferred using RAxML with a general time-reversible model of sequence evolution with a gamma-distributed rate parameter. Model parameters were estimated separately for each fragment using a partition. Node labels show bootstrap support from 1000 bootstraps using RAxML’s rapid bootstrapping algorithm. Tree likelihood = −8205.895. NB: While *BEAST estimates a species tree with as many leaves as taxa considering each gene tree separately, RAxML reconstructs a tree using the whole concatenated dataset, and infers the topological placement of all individuals. As all morphospecies except G. sp. 3 formed clades with 100% bootstrap support, these have been collapsed for comparison with the *BEAST species tree such that the ML tree only shows morphospecies and not individuals.
Figure 4. Results of Bayesian and maximum-likelihood phylogenetic analysis estimating the species tree of the Anisolabididae morphospecies. Labels under species names represent the number of individuals of that morphospecies from which sequences of a combined mitochondrial fragment of cytochrome c oxidase subunit 1 (658 bp) and cytochrome b (358 bp) (1016 bp), a fragment of 28s ribosomal DNA (28S) (442 bp), and the tubulin alpha-1 gene (tuba1) (468 bp) were obtained. Trees were rooted using members of the Labiduridae family, but these were pruned for visualisation. Left: Maximum clade credibility species tree of Anisolabididae morphospecies estimated using *BEAST, a Bayesian reconstruction of the multi-species coalescent of the individual genes. Node labels indicate posterior probability. 95% HPDI of tree likelihood = [−7949.638, −7421.390], mean tree likelihood = −7446.813. Right: Maximum likelihood tree for a concatenated dataset of fragments of the mitochondrial (cox1 + cob), 28S, and tuba1 sequence data inferred using RAxML with a general time-reversible model of sequence evolution with a gamma-distributed rate parameter. Model parameters were estimated separately for each fragment using a partition. Node labels show bootstrap support from 1000 bootstraps using RAxML’s rapid bootstrapping algorithm. Tree likelihood = −8205.895. NB: While *BEAST estimates a species tree with as many leaves as taxa considering each gene tree separately, RAxML reconstructs a tree using the whole concatenated dataset, and infers the topological placement of all individuals. As all morphospecies except G. sp. 3 formed clades with 100% bootstrap support, these have been collapsed for comparison with the *BEAST species tree such that the ML tree only shows morphospecies and not individuals.
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Table 1. Summary of principal component analysis measuring variation among male Anisolabididae specimens for seven morphometric variables related to primary and secondary male sex characteristics. Only principal components accounting for more than 10% of the total variation are shown. Component loadings with an absolute value greater than 0.3 are bolded. “Forceps asymmetry” is an index calculated as the sum of the absolute differences between the heights and widths of a specimen’s two forceps, “Paramere length-width ratio” is the ratio of a specimen’s right paramere’s length to its width, “Forceps asymmetry index” refers to an index calculated using the differences between the lengths and width of the two forceps, and “Forceps length-width ratio” is the ratio of the maximum forceps length to the maximum forceps width”. These three measurements were dimensionless while the basal width of the forceps was in mm.
Table 1. Summary of principal component analysis measuring variation among male Anisolabididae specimens for seven morphometric variables related to primary and secondary male sex characteristics. Only principal components accounting for more than 10% of the total variation are shown. Component loadings with an absolute value greater than 0.3 are bolded. “Forceps asymmetry” is an index calculated as the sum of the absolute differences between the heights and widths of a specimen’s two forceps, “Paramere length-width ratio” is the ratio of a specimen’s right paramere’s length to its width, “Forceps asymmetry index” refers to an index calculated using the differences between the lengths and width of the two forceps, and “Forceps length-width ratio” is the ratio of the maximum forceps length to the maximum forceps width”. These three measurements were dimensionless while the basal width of the forceps was in mm.
PC1PC2PC3
Component Loadings
Basal width of forceps0.370−0.5870.593
Forceps asymmetry index0.7330.0170.026
Paramere length-width ratio0.4170.7570.163
Forceps length-width ratio−0.3890.2850.788
Eigenvalues
Standard deviation1.2921.0511.003
Variance explained0.4170.2760.252
Cumulative variance explained0.4170.6930.945
Table 2. Uncorrected p-distances within and between Dermaptera morphospecies cytochrome c oxidase subunit 1 barcodes (658 bp). Interspecific means and variances are shown on the left and right of the diagonal. Intraspecific mean shown on diagonal with variance in brackets. Variances were calculated using 1000 bootstraps. N refers to number of individuals of morphospecies sequenced. Comparisons between morphospecies in the Anisolabididae family are delineated by a hashed line. Forficula auricularia refers to clade B from Wirth et al. [58], as clade A is not found in Australia [59].
Table 2. Uncorrected p-distances within and between Dermaptera morphospecies cytochrome c oxidase subunit 1 barcodes (658 bp). Interspecific means and variances are shown on the left and right of the diagonal. Intraspecific mean shown on diagonal with variance in brackets. Variances were calculated using 1000 bootstraps. N refers to number of individuals of morphospecies sequenced. Comparisons between morphospecies in the Anisolabididae family are delineated by a hashed line. Forficula auricularia refers to clade B from Wirth et al. [58], as clade A is not found in Australia [59].
NForficula auriculariaLabidura truncataNala lividipesAnisolabis sp. 1Anisolabis sp. 2Gonolabis forcipataGonolabis nr. gilesiGonolabis sp. 1Gonolabis sp. 2Gonolabis sp. 3
Forficula auricularia390.009 (0.003)0.0150.0160.0150.0160.0160.0150.0150.0150.015
Labidura truncata330.2220.007 (0.002)0.0140.0140.0150.0150.0150.0140.0140.015
Nala lividipes260.2270.1810.005 (0.001)0.0140.0150.0150.0150.0140.0150.016
Anisolabis sp. 1170.2200.1780.1940.008 (0.002)0.0120.0130.0130.0120.0130.013
Anisolabis sp. 250.2280.2000.2000.1050.001 (0.001)0.0130.0130.0120.0130.015
Gonolabis forcipata80.2260.2090.1990.1450.1540.017 (0.003)0.0140.0130.0140.015
Gonolabis nr. gilesi30.2220.1980.2020.1360.1390.1790.002 (0.001)0.0110.0130.014
Gonolabis sp. 1120.2160.1890.1960.1170.1210.1510.1040.040 (0.007)0.0110.014
Gonolabis sp. 240.2170.1960.2140.1510.1540.1780.1510.1150.013 (0.002)0.013
Gonolabis sp. 320.2380.1990.2210.1390.1620.1820.1950.1690.1660.000 (0.000)
Table 3. Uncorrected p-distances within and between Anisolabididae morphospecies cytochrome b sequences (358 bp). Interspecific means and variances are shown on the left and right of the diagonal. Intraspecific mean shown on diagonal with variance in brackets. Variances were calculated using 1000 bootstraps. N refers to number of individuals of morphospecies sequenced.
Table 3. Uncorrected p-distances within and between Anisolabididae morphospecies cytochrome b sequences (358 bp). Interspecific means and variances are shown on the left and right of the diagonal. Intraspecific mean shown on diagonal with variance in brackets. Variances were calculated using 1000 bootstraps. N refers to number of individuals of morphospecies sequenced.
NAnisolabis sp. 1Anisolabis sp. 2Gonolabis forcipataGonolabis nr. gilesiGonolabis sp. 1Gonolabis sp. 2Gonolabis sp. 3
Anisolabis sp. 1110.016 (0.004)0.0190.0220.0210.0200.0230.022
Anisolabis sp. 250.1860.001 (0.001)0.0220.0200.0200.0220.023
Gonolabis forcipata80.2490.2670.020 (0.005)0.0220.0220.0230.024
Gonolabis nr. gilesi30.2300.2140.2540.001 (0.001)0.0140.0210.022
Gonolabis sp. 1160.2210.1940.2680.1060.054 (0.012)0.0200.021
Gonolabis sp. 250.2820.2580.3050.2210.2170.019 (0.004)0.023
Gonolabis sp. 320.2340.2620.3150.2650.2520.2940.004 (0.003)
Table 4. Accession numbers of sequences generated by this study and those retrieved from GenBank for phylogenetic analysis. Dashes indicate missing data. ‘cox1’ refers to a fragment of cytochrome c oxidase subunit 1 (658 bp). ‘cob’ refers to a fragment of cytochrome b (358 bp). ‘28S’ refers to a fragment 28S ribosomal DNA (442 bp). ‘tuba1’ refers to a fragment of the tubulin alpha-1 gene (466 bp). ‘Individual’ refers to a single adult Anisolabididae specimen’s in-house code number and is provided for reference to Figures S2–S4.
Table 4. Accession numbers of sequences generated by this study and those retrieved from GenBank for phylogenetic analysis. Dashes indicate missing data. ‘cox1’ refers to a fragment of cytochrome c oxidase subunit 1 (658 bp). ‘cob’ refers to a fragment of cytochrome b (358 bp). ‘28S’ refers to a fragment 28S ribosomal DNA (442 bp). ‘tuba1’ refers to a fragment of the tubulin alpha-1 gene (466 bp). ‘Individual’ refers to a single adult Anisolabididae specimen’s in-house code number and is provided for reference to Figures S2–S4.
IndividualMorphospeciesFamilycox1cob28Stuba1
167Anisolabis sp. 1AnisolabididaeMK399508MK399441MK399637-
173AnisolabididaeMK399511MK399442MK399638-
253AnisolabididaeMK399540MK399447MK399643-
254AnisolabididaeMK399541MK399448MK399644MK399671
269AnisolabididaeMK399545MK399449-MK399672
298AnisolabididaeMK399554--MK399675
301AnisolabididaeMK399558MK399453--
306AnisolabididaeMK399562MK399454--
344AnisolabididaeMK399584MK399464MK399652-
347AnisolabididaeMK399587MK399465MK399653-
348AnisolabididaeMK399588MK399466MK399654-
153Anisolabis sp. 2AnisolabididaeMK399502MK399435-MK399665
155AnisolabididaeMK399504MK399437-MK399667
160AnisolabididaeMK399505MK399438MK399635-
161AnisolabididaeMK399506MK399439MK399636MK399668
288Gonolabis forcipataAnisolabididaeMK399548MK399452-MK399674
324AnisolabididaeMK399574MK399458-MK399678
326AnisolabididaeMK399575MK399459MK399649MK399679
327AnisolabididaeMK399576MK399460MK399650-
331AnisolabididaeMK399578MK399462--
333AnisolabididaeMK399579MK399463-MK399681
308Gonolabis nr. gilesiAnisolabididaeMK399564MK399456MK399647MK399677
309AnisolabididaeMK399565MK399457MK399648-
484AnisolabididaeMK399610MK399471MK399658-
146Gonolabis sp. 1AnisolabididaeMK399500MK399433MK399632-
152AnisolabididaeMK399501MK399434MK399633-
384AnisolabididaeMK399598MK399467MK399655MK399682
385AnisolabididaeMK399599MK399468MK399656MK399683
386AnisolabididaeMK399600MK399469MK399657-
533AnisolabididaeMK399613MK399473MK399659MK399684
535AnisolabididaeMK399614MK399475MK399660-
536AnisolabididaeMK399615MK399476MK399661MK399685
539AnisolabididaeMK399618MK399479MK399664MK399688
232Gonolabis sp. 2AnisolabididaeMK399531MK399443MK399639-
236AnisolabididaeMK399532MK399444MK399640MK399669
239AnisolabididaeMK399533MK399445MK399641-
274AnisolabididaeMK399546MK399450--
251Gonolabis sp. 3AnisolabididaeMK399539MK399446MK399642MK399670
276AnisolabididaeMK399547MK399451MK399645MK399673
C_fletchChallia fletcheriPygidicranidaeNC_018538--
L_riparLabidura ripariaLabiduridaeKX069089-AB119553KX069030
N_tenuiNala tenuicornisLabiduridaeKX069090--KX069055
N_lividNala lividipesLabiduridaeKX069069--KX069048

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Stuart, O.P.; Binns, M.; Umina, P.A.; Holloway, J.; Severtson, D.; Nash, M.; Heddle, T.; van Helden, M.; Hoffmann, A.A. Morphological and Molecular Analysis of Australian Earwigs (Dermaptera) Points to Unique Species and Regional Endemism in the Anisolabididae Family. Insects 2019, 10, 72. https://doi.org/10.3390/insects10030072

AMA Style

Stuart OP, Binns M, Umina PA, Holloway J, Severtson D, Nash M, Heddle T, van Helden M, Hoffmann AA. Morphological and Molecular Analysis of Australian Earwigs (Dermaptera) Points to Unique Species and Regional Endemism in the Anisolabididae Family. Insects. 2019; 10(3):72. https://doi.org/10.3390/insects10030072

Chicago/Turabian Style

Stuart, Oliver P., Matthew Binns, Paul A. Umina, Joanne Holloway, Dustin Severtson, Michael Nash, Thomas Heddle, Maarten van Helden, and Ary A. Hoffmann. 2019. "Morphological and Molecular Analysis of Australian Earwigs (Dermaptera) Points to Unique Species and Regional Endemism in the Anisolabididae Family" Insects 10, no. 3: 72. https://doi.org/10.3390/insects10030072

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