H. pylori Infection and Virulence Factors cagA and vacA (s and m Regions) in Gastric Adenocarcinoma from Pará State, Brazil
Abstract
:1. Introduction
2. Results
3. Discussion
4. Materials and Methods
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Clinical and Epidemiological Variable | Positive H. pylori | Undetectable H. pylori | Value of p | |
---|---|---|---|---|
Age | ≥60 | 65.6% (59/90) | 48.2% (92/191) | 0.0093 |
<60 | 34.4% (31/90) | 51.8% (99/191) | ||
Gender | Man | 60% (54/90) | 72.8% (139/191) | 0.0437 |
Woman | 40% (36/90) | 27.2% (52/191) | ||
Location | Proximal | 37.8% (34/90) | 42.4% (81/191) | 0.4614 |
Distal | 62.2% (56/90) | 57.6% (110/191) | ||
Histological type | Intestinal | 53.3% (48/90) | 57.1% (109/191) | 0.5563 |
Diffuse | 46.7% (42/90) | 42.9% (82/191) | ||
Presence of metastases | presence | 59.6% (53/89) | 41.5% (78/188) | 0.0073 |
Absent | 40.4% (36/89) | 58.5% (110/188) |
Target | Primer PCR | Size (pb) | Reference |
---|---|---|---|
ureA | 5′-GCCAATGGTAAATTAGTT-3′ | 394 | [64] |
5′-CTCCTTAATTGTTTTTAC-3′ | |||
16SrRNA | 5′-CCCATTTGACTCAATGCGATG-3′ | 132 | [65] |
5′-TGGGATTAGCGAGTATGTCGG-3′ | |||
cagA | 5′-GTGCCTGCTAGTTTGTCAGCG-3′ | 402 | [66] |
5′-TTGGAAACCACCTTTTGTATTAGC-3′ | |||
vacA m1/m2 | 5′-CACAGCCACTTTCAATAACGA-3′ | 401/476 | [67] |
5′-CGTCAAAATAATTCCAAGGG-3′ | |||
vacA s1/s2 | 5′-ATGGAAATACAACAAACACAC-3′ | 176/203 | [67] |
5′-CCTGARACCGTTCCTACAGC-3′ |
Components/Concentrations | Volumes | |
---|---|---|
16SrRNA | ureA, cagA, vacA | |
Ultra-pure water | 14.55 μL | 16.55 μL |
Reaction buffer 10X (Invitrogen) | 2.5 μL | 2.5 μL |
Magnesium chloride-MgCl2 50 mM (Invitrogen) | 0.5 μL | 0.5 μL |
Deoxynucleotides-dNTP 10 mM (Invitrogen) | 1.0 µL | 1.0 µL |
Oligonucleotides-10 pmol/μL (Invitrogen) | 1.0 μL/1.0 μL | 1.0 μL/1.0 μL |
Platinum-Taq DNA Polymerase 5 U/µL (Invitrogen) | 0.2 μL | 0.2 μL |
DNA extracted from gastric biopsy | 4 μL | 2 μL |
Final reaction volume | 25 μL | 25 μL |
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Brasil-Costa, I.; Souza, C.d.O.; Monteiro, L.C.R.; Santos, M.E.S.; Oliveira, E.H.C.D.; Burbano, R.M.R. H. pylori Infection and Virulence Factors cagA and vacA (s and m Regions) in Gastric Adenocarcinoma from Pará State, Brazil. Pathogens 2022, 11, 414. https://doi.org/10.3390/pathogens11040414
Brasil-Costa I, Souza CdO, Monteiro LCR, Santos MES, Oliveira EHCD, Burbano RMR. H. pylori Infection and Virulence Factors cagA and vacA (s and m Regions) in Gastric Adenocarcinoma from Pará State, Brazil. Pathogens. 2022; 11(4):414. https://doi.org/10.3390/pathogens11040414
Chicago/Turabian StyleBrasil-Costa, Igor, Cintya de Oliveira Souza, Leni Célia Reis Monteiro, Maria Elisabete Silva Santos, Edivaldo Herculano Correa De Oliveira, and Rommel Mario Rodriguez Burbano. 2022. "H. pylori Infection and Virulence Factors cagA and vacA (s and m Regions) in Gastric Adenocarcinoma from Pará State, Brazil" Pathogens 11, no. 4: 414. https://doi.org/10.3390/pathogens11040414
APA StyleBrasil-Costa, I., Souza, C. d. O., Monteiro, L. C. R., Santos, M. E. S., Oliveira, E. H. C. D., & Burbano, R. M. R. (2022). H. pylori Infection and Virulence Factors cagA and vacA (s and m Regions) in Gastric Adenocarcinoma from Pará State, Brazil. Pathogens, 11(4), 414. https://doi.org/10.3390/pathogens11040414