Rumination Detection in Sheep: A Systematic Review of Sensor-Based Approaches
Abstract
:Simple Summary
Abstract
1. Introduction
- Identify the sensors that were either tested, used, or described in peer-reviewed articles involving rumination detection in sheep;
- Specify the commercial availability of these sensors and their suitability for sheep;
- Provide an overview of the performance of the identified sensors regarding rumination detection in terms of accuracy, sensitivity, precision, and specificity;
- Outline the challenges, future directions, and ideas for further development identified in these studies;
- Draw conclusions regarding the extent to which rumination sensors can be used to reliably assess sheep health and welfare.
2. Materials and Methods
3. Results
3.1. Sensors and Devices
3.1.1. Type of Sensors
3.1.2. Classification Methods
3.1.3. Classification Performances of Rumination Behavior
3.1.4. Commercial Availability of Sensors and Sensor-Applications
- ActiGraph (wGT3X-BT; ActiGraph, LLC, Pensacola, FL, USA);
- GENEActiv (Activinsights Ltd., Kimbolton, Cambridgeshire, UK);
- eSense Flex (Allflex, Dallas, TX, USA);
- Axivity sensors (Axivity Ltd., Newcastle, UK).
Suitability of Commercially Available Sensors Used on Sheep
- ActiGraph Sensor:
- GENEActiv sensor:
- eSense Flex Sensor:
- Axivity Sensor:
Scientific Applications of Commercially Available Sensors That Detect Rumination
3.1.5. Challenges Involved in Detecting Rumination Using Sensors
Identifying the Ideal Sensor Position for Reliable Rumination Detection
Battery Lifespan
Economic Costs
3.2. Future Directions for the Use and Further Development of Sensors That Detect Rumunation
3.2.1. Improving Sensors and Classification Performances
3.2.2. Investigating Rumination as a Welfare Parameter Using Sensors
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
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Reference | Name/Type of Sensor Device | System in Which the Device Was Tested | N, Breed, Sex, Age, Weight, Body Condition Score | Epoch Settings/Window Sizes | Behaviors Classified | Attachment Positions Tested | Method(s) for Classification | Rumination Detection | |||
---|---|---|---|---|---|---|---|---|---|---|---|
Highest Accuracy Reported | Highest Sensitivity Reported | Highest Specificity Reported | Highest Precision Reported | ||||||||
Decandia et al. (2018) [10] | BEHARUM device (includes a three-axial accelerometer sensor and a force sensor) | Bonassai experimental farm of the agricultural research agency of Sardinia | 48 mature lactating Sarda dairy sheep | Epoch settings tested: 5 s, 10 s, 30 s, 60 s, 120 s, 180 s, 300 s | Grazing, ruminating, other activities | Under the lower jaw | CDA and DA | At 30 s (90.0%) | At 120 s (82.2%) | At 30 s (94.7%) | At 30 s (88.1%) |
Decandia et al. (2021) [6] | BEHARUM device, which includes a tri-axial accelerometer sensor, inserted in a micro-electromechanical compact system (MEMS) | Experimental farm of the agricultural research agency of Sardinia (grazing system) | 3 Sarda ewes, 3.5 ± 0.8 years old, 43.5 ± 1.5 kg, BCS 2.5 ± 0.2 | Epochs tested: 5 s, 10 s, 30 s, 60 s, 120 s, 180 s, 300 s. | Grazing, ruminating and other activities | Mouth, nape, collar | Multivariate DA | In collar position at 300 s (94.2%) | In collar position at 300 s (75.0%) | In nape position at 180 s (98.9%) | In nape position at 180 s (81.8%) |
di Virgilio (2018) [22] | Daily Diary and GPS devices (CatLog-B, Perthold Engineering) to combine data from an animal-attached multi-sensor tag (tri-axial acceleration, tri-axial magnetometry, temperature sensor and Global Positioning System) with landscape layers from a Geographical Information System | Fortín Chacabuco ranch | 3 Merino | Grazing, searching, fast walking, vigilance, and resting | One device was attached to the back of the sheep’s head DD, and on the other one to the neck, attached to the GPS collar | Decision trees for each behavior in the training data set using the “Behavior Building’’ tool from Daily Diary Multi-Trace software (http://www.wildbytetechnologies.com/) | Rumination could not be distinguished from resting, but classification accuracy for resting was 75% in DD position | ||||
Hu et al. (2020) [9] | Tri-axial microelectromechanical systems (MEMS) accelerometers attached to neck collars (ActiGraph wGT3X-BT, Pensacola, FL, USA) | Square mixed sward pasture paddock (70 m × 70 m) | 17 Merino ewes | Window sizes tested: 1 s, 2 s, 5 s, 10 s and 15 s | Grazing, ruminating, walking, standing | Devices were attached around the neck of the animals with an elasticated strap | three ML approaches, RF, SVM and LDA | F1-Score best with window size at 2 s and RF method | |||
Mansbridge et al. (2018) [8] | Custom-made wearable device based on the Intel® Quark™ SE microcontroller C1000 including an accelerometer and a gyroscope sensor | When recordings were taking place, sheep were kept in a rectangular, 0.3-acre field with a 179.3 m perimeter | 6 sheep in total, (3 Texel cross, 1 Suffolk cross and 2 Mule), 18 months–4 years old, BCS 2.5 to 4 | 7-s sample window | Grazing, non-eating behavior, ruminating | Ear and collar | ML algorithms: RF, SVM, kNN, and Adaboost | F-Score using 39 features of specific eating behavioral activities based on RF was slightly higher for collar data (89%) than for ear data (88%) | Recall using 39 features of specific eating behavioral activities based on RF was slightly higher for collar data (87%) than for ear data (86%) | Collar data and ear data both 97% using 39 features of specific eating behavioral activities based on RF | In collar position (92%) using 39 features of specific eating behavioral activities based on RF |
Price et al. (2022) [19] | GENEActiv (Activinsights Ltd., Kimbolton, Cambridgeshire, UK) accelerometer-based sensors (wrist-worn devices designed to measure activity in humans) | Commercial sheep farm located in Devon, UK that houses approximately 120 Poll Dorset ewes | 196 Poll Dorset sheep (76 ewes and 120 lambs) | Ewes: ruminating, walking; lambs: walking/running, suckling, Both: standing, lying, inactive | Collar-mounted accelerometers (ewes) detected rumination | RF | F-Score for collar position on ewes (only value reported): 76.1% | Sensitivity/Recall for collar position on ewes (only value reported): 77.2% | For collar position on ewes (only value reported): 89.2% | For collar position on ewes 75.0% | |
Sohi et al. (2022) [3] | (ActiGraph wGT3X-BT; ActiGraph LLC, Pensacola, FL, USA) tri-axial accelerometer sensors | Commercial farm | 32 first-cross Merino ewes (Merino × Border Leicester and East Friesian) | Licking, grazing, rumination, walking, and idling | Halters (placed on the left side of the face) | Concordance (Percentage agreement) between observed and predicted rumination behavior: 95 ± 10 | |||||
Turner et al. (2022) [7] | ActiGraph sensors (ActiGraph, Pensacola, FL, USA) and ear mounted Axivity sensors (Axivity Ltd., Newcastle, UK) | Muresk Institute Farm | 30 Merino ewes, 8 months old | 10 s epoch | Sitting, standing, walking, grazing, and ruminating | Jaw and the ear mounted | RF, Long Short-Term Memory, and Bidirectional LSTM | Weighted average F1-score best at RF Baseline (0.84) | Weighted average Recall best at RF Baseline (0.86) | Weighted average precision best with Synthetic Minority Oversampling Techniques (0.83) |
Reference | Name/Type of Sensor Device | N, Sex Age, Weight, Lactation Stage of Sheep | System in Which the Device Was Used | Country | Aim Regarding Rumination Detection | Main Findings Regarding the Detection of Rumination | Attachment Positions Tested |
---|---|---|---|---|---|---|---|
Almasi et al. (2022a) [27] | ActiGraph (wGT3X-BT; ActiGraph, LLC, Pensacola, FL, USA) sensors | 147 (male = 67, female = 80) Merino lambs at 10–11 months of age | Commercial farm | Australia | To determine the distributions and quantify the variation among animals with respect to the times spent grazing, ruminating, idling, walking, and licking. | The proportion of each hour spent ruminating varied between 5 and 30 min/h in female sheep whereas male sheep spent as much as 20 min/h in the morning after sunrise. The mean amount ± see of time male sheep spent rumination was 464 ± 3.0 min/day, whereas female sheep spent 399 ± 2.0 min/day. | attached to the left side of the sheep’s muzzle |
Ogun et al. (2022) [11] | The commercial ear-tag sensor (eSense Flex, Allflex, Dallas, TX, USA) had been previously tested for use in sheep (Caja et al., 2020 [30]) and were active PLF devices containing a 3-axial accelerometer designed for measuring rumination and motion activity in cattle (calves and adult). | 12 Biellese lambs (four females and eight males) and 10 Sambucana lambs (three females and seven males) | Transport and pre-slaughter management | Italy | Precision livestock farming (PLF) technologies were implemented, including accelerometer and rumination activity ear-tag sensors, as potential welfare indicators during transportation and pre-slaughter | Lambs with lower rumination and/or lower total activity were found to have lower drip loss indicating reduced meat quality. | |
Almasi et al. (2022b) [4] | ActiGraph (wGT3X-BT; ActiGraph, LLC, Pensacola, FL, USA) accelerometer sensor | 147 Merino sheep with the average liveweight of 45.8 ± 14 kg (mean ± S.D.) from 3rd to 29th of May 2020. The ram (n = 67) and hogget (n = 80) | Commercial farm | Australia | To estimate: (1) the repeatability of grazing and rumination activities between days and during the whole experiment; and (2) the heritability of grazing and rumination activities | Sensor technology and support vector machine method can be applied to determine grazing and rumination activities of sheep with potential application for breeding strategies | To the left side of the muzzle |
Dos Reis et al. (2020) [21] | Espressif ESP-32-WROOM-32 microprocessor with Wi-Fi and Bluetooth communication, a generic MPU92/50 motion sensor which contains a three-axis accelerometer, three-axis magnetometer, and a three-axis gyroscope, and a 5-V rechargeable lithium-ion battery. | 6 housed adult crossbred Suffolk × Dorset wethers, with an average weight of 70 ± 5 kg (mean ± SD) | Smithfield Farm, Virginia Polytechnic Institute and State University, Blacksburg, VA | USA | To showcase an open-source, microprocessor-based sensor created for the purpose of monitoring and distinguishing various behaviors exhibited by adult wethers | The sensor is able to discern animal behaviors using sensed data (p < 0.001). While significant further efforts are required for refining algorithms, testing power sources, and optimizing network functionality, this open-source platform emerges as a promising approach for conducting research on wearable sensors in a broadly applicable manner. | Deployed on a neck collar |
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Schneidewind, S.J.; Al Merestani, M.R.; Schmidt, S.; Schmidt, T.; Thöne-Reineke, C.; Wiegard, M. Rumination Detection in Sheep: A Systematic Review of Sensor-Based Approaches. Animals 2023, 13, 3756. https://doi.org/10.3390/ani13243756
Schneidewind SJ, Al Merestani MR, Schmidt S, Schmidt T, Thöne-Reineke C, Wiegard M. Rumination Detection in Sheep: A Systematic Review of Sensor-Based Approaches. Animals. 2023; 13(24):3756. https://doi.org/10.3390/ani13243756
Chicago/Turabian StyleSchneidewind, Stephanie Janet, Mohamed Rabih Al Merestani, Sven Schmidt, Tanja Schmidt, Christa Thöne-Reineke, and Mechthild Wiegard. 2023. "Rumination Detection in Sheep: A Systematic Review of Sensor-Based Approaches" Animals 13, no. 24: 3756. https://doi.org/10.3390/ani13243756
APA StyleSchneidewind, S. J., Al Merestani, M. R., Schmidt, S., Schmidt, T., Thöne-Reineke, C., & Wiegard, M. (2023). Rumination Detection in Sheep: A Systematic Review of Sensor-Based Approaches. Animals, 13(24), 3756. https://doi.org/10.3390/ani13243756